Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:50:55 (3309512): wrapper (7.7.26015): starting
18:50:55 (3309512): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 18:50:55] Arguments: --nthreads 4
[2026-01-26 18:50:55] Threads: 4
[2026-01-26 18:50:55] Checking for CVMFS
[2026-01-26 18:50:55] No cvmfs_config command found, will try listing directly
[2026-01-26 18:50:55] CVMFS is ok
[2026-01-26 18:50:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 18:50:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 18:50:55] Further information can be found at the LHC@home message board.
[2026-01-26 18:50:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 18:50:55] Checking for apptainer binary...
[2026-01-26 18:50:55] which: no apptainer in ((null))
[2026-01-26 18:50:55] apptainer is not installed, using version from CVMFS
[2026-01-26 18:50:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 18:50:55] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-01-26 18:50:55] apptainer works
[2026-01-26 18:50:55] Set ATHENA_PROC_NUMBER=4
[2026-01-26 18:50:55] Set ATHENA_CORE_NUMBER=4
[2026-01-26 18:50:55] Starting ATLAS job with PandaID=6969546550
[2026-01-26 18:50:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 20:33:59]  *** The last 200 lines of the pilot log: ***
[2026-01-26 20:33:59]  surl=/scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6969546550/log.48215263._029998.job.log.tgz.1
[2026-01-26 20:33:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dd/2d/log.48215263._029998.job.log.tgz.1
[2026-01-26 20:33:59]  workdir=None
[2026-01-26 20:33:59] ]
[2026-01-26 20:33:59] 2026-01-26 19:30:33,133 | INFO     | transferring file log.48215263._029998.job.log.tgz.1 from /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6969546550/log.48215263._029998.job.log.tgz.1 to /scratch/b
[2026-01-26 20:33:59] 2026-01-26 19:30:33,133 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6969546550/log.48215263._029998.job.log.tgz.1 /scratch/boinc/var/slot80/slots/0/lo
[2026-01-26 20:33:59] 2026-01-26 19:30:33,157 | INFO     | adding to output.list: log.48215263._029998.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dd/2d/log.48215263._029998.job.log.tg
[2026-01-26 20:33:59] 2026-01-26 19:30:33,158 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 20:33:59] 2026-01-26 19:30:33,158 | INFO     | summary of transferred files:
[2026-01-26 20:33:59] 2026-01-26 19:30:33,158 | INFO     |  -- lfn=log.48215263._029998.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 20:33:59] 2026-01-26 19:30:33,158 | INFO     | stage-out finished correctly
[2026-01-26 20:33:59] 2026-01-26 19:30:34,062 | INFO     | time since job start (5964s) is within the limit (349056.0s)
[2026-01-26 20:33:59] 2026-01-26 19:30:35,730 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 20:33:59] 2026-01-26 19:30:36,067 | INFO     | time since job start (5966s) is within the limit (349056.0s)
[2026-01-26 20:33:59] 2026-01-26 19:30:37,792 | INFO     | job 6969546550 has state=finished
[2026-01-26 20:33:59] 2026-01-26 19:30:37,792 | INFO     | preparing for final server update for job 6969546550 in state='finished'
[2026-01-26 20:33:59] 2026-01-26 19:30:37,793 | INFO     | this job has now completed (state=finished)
[2026-01-26 20:33:59] 2026-01-26 19:30:37,793 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 20:33:59] 2026-01-26 19:30:37,793 | INFO     | log transfer has been attempted: DONE
[2026-01-26 20:33:59] 2026-01-26 19:30:37,793 | INFO     | job 6969546550 has finished - writing final server update
[2026-01-26 20:33:59] 2026-01-26 19:30:37,793 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3082893/.job.ad'
[2026-01-26 20:33:59] 2026-01-26 19:30:37,793 | INFO     | total number of processed events: 400 (read)
[2026-01-26 20:33:59] 2026-01-26 19:30:37,794 | INFO     | executing command: lscpu
[2026-01-26 20:33:59] 2026-01-26 19:30:37,887 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-26 20:33:59] 2026-01-26 19:30:38,072 | INFO     | time since job start (5968s) is within the limit (349056.0s)
[2026-01-26 20:33:59] 2026-01-26 19:30:38,921 | WARNING  | process 3321949 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 20:33:59] 2026-01-26 19:30:38,921 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6969546550/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 20:33:59] 2026-01-26 19:30:39,699 | INFO     | number of running child processes to parent process 3321949: 1
[2026-01-26 20:33:59] 2026-01-26 19:30:39,700 | INFO     | maximum number of monitored processes: 6
[2026-01-26 20:33:59] 2026-01-26 19:30:40,078 | INFO     | time since job start (5970s) is within the limit (349056.0s)
[2026-01-26 20:33:59] 2026-01-26 19:30:42,009 | INFO     | PID=3314007 has CPU usage=22.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-26 20:33:59] 2026-01-26 19:30:42,010 | INFO     | .. there are 9 such processes running
[2026-01-26 20:33:59] 2026-01-26 19:30:42,205 | INFO     | monitor loop #412: job 0:6969546550 is in state 'finished'
[2026-01-26 20:33:59] 2026-01-26 19:30:42,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 20:33:59] 2026-01-26 19:30:43,010 | INFO     | time since job start (5973s) is within the limit (349056.0s)
[2026-01-26 20:33:59] 2026-01-26 19:30:44,708 | INFO     | monitor loop #413: job 0:6969546550 is in state 'finished'
[2026-01-26 20:33:59] 2026-01-26 19:30:44,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 20:33:59] 2026-01-26 19:30:45,014 | INFO     | time since job start (5975s) is within the limit (349056.0s)
[2026-01-26 20:33:59] 2026-01-26 19:30:45,565 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-26 20:33:59] 2026-01-26 19:30:45,585 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2698.0827578125004
[2026-01-26 20:33:59] 2026-01-26 19:30:45,610 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6969546550/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 20:33:59] 2026-01-26 19:30:45,611 | INFO     | extracted standard info from prmon json
[2026-01-26 20:33:59] 2026-01-26 19:30:45,611 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 20:33:59] 2026-01-26 19:30:45,611 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 20:33:59] 2026-01-26 19:30:45,611 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 20:33:59] 2026-01-26 19:30:45,611 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 20:33:59] 2026-01-26 19:30:45,613 | INFO     | fitting pss+swap vs Time
[2026-01-26 20:33:59] 2026-01-26 19:30:45,614 | INFO     | sum of square deviations: 233641590.0
[2026-01-26 20:33:59] 2026-01-26 19:30:45,614 | INFO     | sum of deviations: -6179746825.0
[2026-01-26 20:33:59] 2026-01-26 19:30:45,614 | INFO     | mean x: 1769452953.0
[2026-01-26 20:33:59] 2026-01-26 19:30:45,614 | INFO     | mean y: 2392936.2967032967
[2026-01-26 20:33:59] 2026-01-26 19:30:45,614 | INFO     | intersect: 46803868941.86841
[2026-01-26 20:33:59] 2026-01-26 19:30:45,615 | INFO     | chi2: 0.036696980148257105
[2026-01-26 20:33:59] 2026-01-26 19:30:45,615 | INFO     | current memory leak: -26.45 B/s (using 91 data points, chi2=0.04)
[2026-01-26 20:33:59] 2026-01-26 19:30:45,615 | INFO     | could have reported an average CPU frequency of 2697 MHz (7 samples)
[2026-01-26 20:33:59] 2026-01-26 19:30:45,615 | INFO     | ..............................
[2026-01-26 20:33:59] 2026-01-26 19:30:45,615 | INFO     | . Timing measurements:
[2026-01-26 20:33:59] 2026-01-26 19:30:45,615 | INFO     | . get job = 0 s
[2026-01-26 20:33:59] 2026-01-26 19:30:45,615 | INFO     | . initial setup = 1 s
[2026-01-26 20:33:59] 2026-01-26 19:30:45,616 | INFO     | . payload setup = 8 s
[2026-01-26 20:33:59] 2026-01-26 19:30:45,616 | INFO     | . stage-in = 0 s
[2026-01-26 20:33:59] 2026-01-26 19:30:45,616 | INFO     | . payload execution = 5933 s
[2026-01-26 20:33:59] 2026-01-26 19:30:45,616 | INFO     | . stage-out = 0 s
[2026-01-26 20:33:59] 2026-01-26 19:30:45,616 | INFO     | . log creation = 0 s
[2026-01-26 20:33:59] 2026-01-26 19:30:45,616 | INFO     | ..............................
[2026-01-26 20:33:59] 2026-01-26 19:30:45,712 | INFO     | 
[2026-01-26 20:33:59] 2026-01-26 19:30:45,712 | INFO     | job summary report
[2026-01-26 20:33:59] 2026-01-26 19:30:45,712 | INFO     | --------------------------------------------------
[2026-01-26 20:33:59] 2026-01-26 19:30:45,712 | INFO     | PanDA job id: 6969546550
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | task id: 48215263
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | errors: (none)
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | pilot state: finished 
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | transexitcode: 0
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | exeerrorcode: 0
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | exeerrordiag: 
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | exitcode: 0
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | exitmsg: OK
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | cpuconsumptiontime: 22542 s
[2026-01-26 20:33:59] 2026-01-26 19:30:45,713 | INFO     | nevents: 400
[2026-01-26 20:33:59] 2026-01-26 19:30:45,714 | INFO     | neventsw: 0
[2026-01-26 20:33:59] 2026-01-26 19:30:45,714 | INFO     | pid: 3321949
[2026-01-26 20:33:59] 2026-01-26 19:30:45,714 | INFO     | pgrp: 3321949
[2026-01-26 20:33:59] 2026-01-26 19:30:45,714 | INFO     | corecount: 4
[2026-01-26 20:33:59] 2026-01-26 19:30:45,714 | INFO     | event service: False
[2026-01-26 20:33:59] 2026-01-26 19:30:45,714 | INFO     | sizes: {0: 2283957, 7: 2284219, 11: 2284247, 5946: 2320332, 5949: 2320332, 5959: 2320526}
[2026-01-26 20:33:59] 2026-01-26 19:30:45,714 | INFO     | --------------------------------------------------
[2026-01-26 20:33:59] 2026-01-26 19:30:45,714 | INFO     | 
[2026-01-26 20:33:59] 2026-01-26 19:30:45,714 | INFO     | executing command: ls -lF /scratch/boinc/var/slot80/slots/0
[2026-01-26 20:33:59] 2026-01-26 19:30:45,741 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,742 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | job 6969546550 has completed (purged errors)
[2026-01-26 20:33:59] 2026-01-26 19:30:45,743 | INFO     | overall cleanup function is called
[2026-01-26 20:33:59] 2026-01-26 19:30:46,751 | INFO     | --- collectZombieJob: --- 10, [3321949]
[2026-01-26 20:33:59] 2026-01-26 19:30:46,751 | INFO     | zombie collector waiting for pid 3321949
[2026-01-26 20:33:59] 2026-01-26 19:30:46,751 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 20:33:59] 2026-01-26 19:30:46,751 | INFO     | collected zombie processes
[2026-01-26 20:33:59] 2026-01-26 19:30:46,751 | INFO     | will attempt to kill all subprocesses of pid=3321949
[2026-01-26 20:33:59] 2026-01-26 19:30:47,512 | INFO     | process IDs to be killed: [3321949] (in reverse order)
[2026-01-26 20:33:59] 2026-01-26 19:30:47,747 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 20:33:59] 2026-01-26 19:30:47,747 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 20:33:59] 2026-01-26 19:30:47,780 | INFO     | did not find any defunct processes belonging to 3321949
[2026-01-26 20:33:59] 2026-01-26 19:30:47,812 | INFO     | did not find any defunct processes belonging to 3321949
[2026-01-26 20:33:59] 2026-01-26 19:30:47,812 | INFO     | ready for new job
[2026-01-26 20:33:59] 2026-01-26 19:30:47,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 20:33:59] 2026-01-26 19:30:47,815 | INFO     | ***************************************
[2026-01-26 20:33:59] 2026-01-26 19:30:47,815 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-26 20:33:59] 2026-01-26 19:30:47,815 | INFO     | ***************************************
[2026-01-26 20:33:59] 2026-01-26 19:30:47,815 | INFO     | 
[2026-01-26 20:33:59] 2026-01-26 19:30:47,823 | INFO     | architecture information:
[2026-01-26 20:33:59] 2026-01-26 19:30:47,823 | INFO     | executing command: cat /etc/os-release
[2026-01-26 20:33:59] 2026-01-26 19:30:47,848 | INFO     | cat /etc/os-release:
[2026-01-26 20:33:59] NAME="CentOS Linux"
[2026-01-26 20:33:59] VERSION="7 (Core)"
[2026-01-26 20:33:59] ID="centos"
[2026-01-26 20:33:59] ID_LIKE="rhel fedora"
[2026-01-26 20:33:59] VERSION_ID="7"
[2026-01-26 20:33:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 20:33:59] ANSI_COLOR="0;31"
[2026-01-26 20:33:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 20:33:59] HOME_URL="https://www.centos.org/"
[2026-01-26 20:33:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 20:33:59] 
[2026-01-26 20:33:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 20:33:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 20:33:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 20:33:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 20:33:59] 
[2026-01-26 20:33:59] 2026-01-26 19:30:47,849 | INFO     | ***************************************
[2026-01-26 20:33:59] 2026-01-26 19:30:48,352 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/0
[2026-01-26 20:33:59] 2026-01-26 19:30:48,382 | INFO     | sufficient remaining disk space (3311925198848 B)
[2026-01-26 20:33:59] 2026-01-26 19:30:48,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 20:33:59] 2026-01-26 19:30:48,383 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 20:33:59] 2026-01-26 19:30:48,383 | INFO     | update_server=False
[2026-01-26 20:33:59] 2026-01-26 19:30:48,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 20:33:59] 2026-01-26 19:30:48,383 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:33:59] 2026-01-26 19:30:48,384 | INFO     | aborting loop
[2026-01-26 20:33:59] 2026-01-26 19:30:48,561 | INFO     | all payload control threads have been joined
[2026-01-26 20:33:59] 2026-01-26 19:30:48,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 20:33:59] 2026-01-26 19:30:49,338 | INFO     | all data control threads have been joined
[2026-01-26 20:33:59] 2026-01-26 19:30:49,388 | INFO     | [job] job monitor thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:49,389 | INFO     | [job] retrieve thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:49,467 | INFO     | all job control threads have been joined
[2026-01-26 20:33:59] 2026-01-26 19:30:49,473 | INFO     | [payload] validate_post thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:49,566 | INFO     | [payload] control thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:49,735 | INFO     | [job] validate thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:49,879 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:49,965 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:50,162 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:50,318 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:50,343 | INFO     | [data] control thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:50,391 | INFO     | [payload] failed_post thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:50,472 | INFO     | [job] control thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:50,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:33:59] 2026-01-26 19:30:50,784 | INFO     | [data] copytool_out thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:50,835 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 20:33:59] 2026-01-26 19:30:50,836 | INFO     | [data] copytool_in thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:51,727 | INFO     | [job] queue monitor thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:30:54,841 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 20:33:59] 2026-01-26 19:31:19,024 | INFO     | PID=3314007 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 20:33:59] 2026-01-26 19:31:19,024 | INFO     | .. there are 9 such processes running
[2026-01-26 20:33:59] 2026-01-26 19:31:19,024 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 20:33:59] 2026-01-26 19:31:19,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 20:33:59] 2026-01-26 19:31:19,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 20:33:59] 2026-01-26 19:31:19,071 | INFO     | [monitor] cgroup control has ended
[2026-01-26 20:33:59] 2026-01-26 19:31:21,147 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22553066100544)>', '<ExcThread(monitor, started 22552831301376)>']
[2026-01-26 20:33:59] 2026-01-26 19:31:22,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 20:33:59] 2026-01-26 19:31:22,040 | INFO     | [monitor] control thread has ended
[2026-01-26 20:33:59] 2026-01-26 19:31:26,172 | INFO     | all workflow threads have been joined
[2026-01-26 20:33:59] 2026-01-26 19:31:26,172 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 20:33:59] 2026-01-26 19:31:26,172 | INFO     | traces error code: 0
[2026-01-26 20:33:59] 2026-01-26 19:31:26,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 20:33:59] 2026-01-26 19:31:26,317 [wrapper] ==== pilot stdout END ====
[2026-01-26 20:33:59] 2026-01-26 19:31:26,321 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 20:33:59] 2026-01-26 19:31:26,325 [wrapper] pilotpid: 3314007
[2026-01-26 20:33:59] 2026-01-26 19:31:26,330 [wrapper] Pilot exit status: 0
[2026-01-26 20:33:59] 2026-01-26 19:31:26,347 [wrapper] pandaids: 6969546550
[2026-01-26 20:33:59] 2026-01-26 19:31:26,519 [wrapper] cleanup supervisor_pilot 3473420 3314008
[2026-01-26 20:33:59] 2026-01-26 19:31:26,523 [wrapper] Test setup, not cleaning
[2026-01-26 20:33:59] 2026-01-26 19:31:26,527 [wrapper] apfmon messages muted
[2026-01-26 20:33:59] 2026-01-26 19:31:26,531 [wrapper] ==== wrapper stdout END ====
[2026-01-26 20:33:59] 2026-01-26 19:31:26,535 [wrapper] ==== wrapper stderr END ====
[2026-01-26 20:33:59]  *** Error codes and diagnostics ***
[2026-01-26 20:33:59]     "exeErrorCode": 0,
[2026-01-26 20:33:59]     "exeErrorDiag": "",
[2026-01-26 20:33:59]     "pilotErrorCode": 0,
[2026-01-26 20:33:59]     "pilotErrorDiag": "",
[2026-01-26 20:33:59]  *** Listing of results directory ***
[2026-01-26 20:33:59] total 1517068
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc    579449 Jan 14 18:34 pilot3.tar.gz
[2026-01-26 20:33:59] -rwx------ 1 boinc boinc     36322 Jan 14 18:34 runpilot2-wrapper.sh
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc      5112 Jan 14 18:34 queuedata.json
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc       100 Jan 17 18:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 20:33:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 17 18:43 run_atlas
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc       105 Jan 17 18:43 job.xml
[2026-01-26 20:33:59] -rw------- 2 boinc boinc 339017728 Jan 17 18:48 copy_3Rhr8X
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  26673152 Jan 17 19:26 copy_iiXDPS
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  30932992 Jan 18 16:47 copy_wlDt2w
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  10813440 Jan 19 14:21 copy_KnhykT
[2026-01-26 20:33:59] -rw------- 2 boinc boinc   1572864 Jan 20 13:25 copy_gC1XCX
[2026-01-26 20:33:59] -rw------- 2 boinc boinc   2162688 Jan 20 13:35 copy_vow5fv
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  96731136 Jan 20 14:59 copy_S5KDcI
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  68812800 Jan 22 22:59 copy_ljQAYV
[2026-01-26 20:33:59] -rw------- 2 boinc boinc 156565504 Jan 24 04:19 copy_nxCKu5
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  24772608 Jan 24 07:02 copy_puX1l7
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  46792704 Jan 25 13:08 copy_kS94eY
[2026-01-26 20:33:59] -rw-r--r-- 2 boinc boinc 589389283 Jan 26 18:50 EVNT.32794306._001201.pool.root.1
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc      6687 Jan 26 18:50 init_data.xml
[2026-01-26 20:33:59] -rw-r--r-- 2 boinc boinc     15847 Jan 26 18:50 start_atlas.sh
[2026-01-26 20:33:59] drwxrwx--x 2 boinc boinc      4096 Jan 26 18:50 shared
[2026-01-26 20:33:59] -rw-r--r-- 2 boinc boinc    592395 Jan 26 18:50 input.tar.gz
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc         0 Jan 26 18:50 boinc_lockfile
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc      2506 Jan 26 18:50 pandaJob.out
[2026-01-26 20:33:59] -rw------- 1 boinc boinc   1006384 Jan 26 18:51 agis_schedconf.cvmfs.json
[2026-01-26 20:33:59] -rw------- 1 boinc boinc   1516246 Jan 26 18:51 agis_ddmendpoints.agis.ALL.json
[2026-01-26 20:33:59] drwx------ 5 boinc boinc      4096 Jan 26 18:51 pilot3
[2026-01-26 20:33:59] -rw------- 1 boinc boinc 153029912 Jan 26 20:30 HITS.48215263._029998.pool.root.1
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc       529 Jan 26 20:30 boinc_task_state.xml
[2026-01-26 20:33:59] -rw------- 1 boinc boinc      1032 Jan 26 20:30 memory_monitor_summary.json
[2026-01-26 20:33:59] -rw------- 1 boinc boinc    269071 Jan 26 20:30 log.48215263._029998.job.log.tgz.1
[2026-01-26 20:33:59] -rw------- 1 boinc boinc      7785 Jan 26 20:30 heartbeat.json
[2026-01-26 20:33:59] -rw------- 1 boinc boinc        95 Jan 26 20:30 pilot_heartbeat.json
[2026-01-26 20:33:59] -rw------- 1 boinc boinc      4834 Jan 26 20:31 pilotlog.txt
[2026-01-26 20:33:59] -rw------- 1 boinc boinc    856279 Jan 26 20:31 log.48215263._029998.job.log.1
[2026-01-26 20:33:59] -rw------- 1 boinc boinc       357 Jan 26 20:31 output.list
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc       620 Jan 26 20:31 runtime_log
[2026-01-26 20:33:59] -rw------- 1 boinc boinc   1146880 Jan 26 20:31 result.tar.gz
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc      9205 Jan 26 20:31 runtime_log.err
[2026-01-26 20:33:59] -rw------- 1 boinc boinc       662 Jan 26 20:31 KOSKDmbwJ08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVulKDmBKsYNo.diag
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc        26 Jan 26 20:33 wrapper_checkpoint.txt
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc      8192 Jan 26 20:33 boinc_mmap_file
[2026-01-26 20:33:59] -rw-r--r-- 1 boinc boinc     22271 Jan 26 20:33 stderr.txt
[2026-01-26 20:33:59] HITS file was successfully produced:
[2026-01-26 20:33:59] -rw------- 1 boinc boinc 153029912 Jan 26 20:30 shared/HITS.pool.root.1
[2026-01-26 20:33:59]  *** Contents of shared directory: ***
[2026-01-26 20:33:59] total 1512756
[2026-01-26 20:33:59] -rw------- 2 boinc boinc 339017728 Jan 17 18:48 copy_3Rhr8X
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  26673152 Jan 17 19:26 copy_iiXDPS
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  30932992 Jan 18 16:47 copy_wlDt2w
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  10813440 Jan 19 14:21 copy_KnhykT
[2026-01-26 20:33:59] -rw------- 2 boinc boinc   1572864 Jan 20 13:25 copy_gC1XCX
[2026-01-26 20:33:59] -rw------- 2 boinc boinc   2162688 Jan 20 13:35 copy_vow5fv
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  96731136 Jan 20 14:59 copy_S5KDcI
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  68812800 Jan 22 22:59 copy_ljQAYV
[2026-01-26 20:33:59] -rw------- 2 boinc boinc 156565504 Jan 24 04:19 copy_nxCKu5
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  24772608 Jan 24 07:02 copy_puX1l7
[2026-01-26 20:33:59] -rw------- 2 boinc boinc  46792704 Jan 25 13:08 copy_kS94eY
[2026-01-26 20:33:59] -rw-r--r-- 2 boinc boinc 589389283 Jan 26 18:50 ATLAS.root_0
[2026-01-26 20:33:59] -rw-r--r-- 2 boinc boinc     15847 Jan 26 18:50 start_atlas.sh
[2026-01-26 20:33:59] -rw-r--r-- 2 boinc boinc    592395 Jan 26 18:50 input.tar.gz
[2026-01-26 20:33:59] -rw------- 1 boinc boinc 153029912 Jan 26 20:30 HITS.pool.root.1
[2026-01-26 20:33:59] -rw------- 1 boinc boinc   1146880 Jan 26 20:31 result.tar.gz
20:34:00 (3309512): run_atlas exited; CPU time 22897.248082
20:34:00 (3309512): called boinc_finish(0)

</stderr_txt>
]]>

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