Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:28:33 (15207): wrapper (7.7.26015): starting
14:28:33 (15207): wrapper: running run_atlas (--nthreads 8)
[2026-01-14 14:28:33] Arguments: --nthreads 8
[2026-01-14 14:28:33] Threads: 8
[2026-01-14 14:28:33] Checking for CVMFS
[2026-01-14 14:28:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 14:28:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 14:28:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 14:28:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 14:28:33] 2.11.2.0 2756 144281 89652 155142 3 58 16773655 20275200 1 130560 0 39905709 99.868 8105680 35404 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-14 14:28:33] CVMFS is ok
[2026-01-14 14:28:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 14:28:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 14:28:33] Further information can be found at the LHC@home message board.
[2026-01-14 14:28:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 14:28:33] Checking for apptainer binary...
[2026-01-14 14:28:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 14:28:33] Running /usr/bin/apptainer --version
[2026-01-14 14:28:33] apptainer version 1.3.2-1.el7
[2026-01-14 14:28:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 14:28:35] c-115-14.aglt2.org
[2026-01-14 14:28:35] apptainer works
[2026-01-14 14:28:35] Set ATHENA_PROC_NUMBER=8
[2026-01-14 14:28:35] Set ATHENA_CORE_NUMBER=8
[2026-01-14 14:28:35] Starting ATLAS job with PandaID=6969484783
[2026-01-14 14:28:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 15:42:29]  *** The last 200 lines of the pilot log: ***
[2026-01-14 15:42:29]  replicas=None
[2026-01-14 15:42:29]  scope=mc23_13p6TeV
[2026-01-14 15:42:29]  status=None
[2026-01-14 15:42:29]  status_code=0
[2026-01-14 15:42:29]  storage_token=
[2026-01-14 15:42:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969484783/log.48215263._025969.job.log.tgz.1
[2026-01-14 15:42:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/34/log.48215263._025969.job.log.tgz.1
[2026-01-14 15:42:29]  workdir=None
[2026-01-14 15:42:29] ]
[2026-01-14 15:42:29] 2026-01-14 20:41:49,012 | INFO     | transferring file log.48215263._025969.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969484783/log.48215263._025969.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-14 15:42:29] 2026-01-14 20:41:49,013 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969484783/log.48215263._025969.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._025969.job
[2026-01-14 15:42:29] 2026-01-14 20:41:49,034 | INFO     | adding to output.list: log.48215263._025969.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/34/log.48215263._025969.job.log.tg
[2026-01-14 15:42:29] 2026-01-14 20:41:49,035 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 15:42:29] 2026-01-14 20:41:49,036 | INFO     | summary of transferred files:
[2026-01-14 15:42:29] 2026-01-14 20:41:49,036 | INFO     |  -- lfn=log.48215263._025969.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 15:42:29] 2026-01-14 20:41:49,036 | INFO     | stage-out finished correctly
[2026-01-14 15:42:29] 2026-01-14 20:41:49,440 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 15:42:29] 2026-01-14 20:41:50,017 | INFO     | time since job start (4378s) is within the limit (349056.0s)
[2026-01-14 15:42:29] 2026-01-14 20:41:51,216 | INFO     | monitor loop #325: job 0:6969484783 is in state 'finished'
[2026-01-14 15:42:29] 2026-01-14 20:41:51,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:42:29] 2026-01-14 20:41:51,289 | INFO     | job 6969484783 has state=finished
[2026-01-14 15:42:29] 2026-01-14 20:41:51,289 | INFO     | preparing for final server update for job 6969484783 in state='finished'
[2026-01-14 15:42:29] 2026-01-14 20:41:51,359 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-14 15:42:29] 2026-01-14 20:41:51,360 | INFO     | this job has now completed (state=finished)
[2026-01-14 15:42:29] 2026-01-14 20:41:51,360 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 15:42:29] 2026-01-14 20:41:51,360 | INFO     | log transfer has been attempted: DONE
[2026-01-14 15:42:29] 2026-01-14 20:41:51,360 | INFO     | job 6969484783 has finished - writing final server update
[2026-01-14 15:42:29] 2026-01-14 20:41:51,360 | INFO     | total number of processed events: 400 (read)
[2026-01-14 15:42:29] 2026-01-14 20:41:51,361 | INFO     | executing command: lscpu
[2026-01-14 15:42:29] 2026-01-14 20:41:51,386 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 15:42:29] 2026-01-14 20:41:52,021 | INFO     | time since job start (4380s) is within the limit (349056.0s)
[2026-01-14 15:42:29] 2026-01-14 20:41:52,022 | INFO     | 4382s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-14 15:42:29] 2026-01-14 20:41:53,719 | INFO     | monitor loop #326: job 0:6969484783 is in state 'finished'
[2026-01-14 15:42:29] 2026-01-14 20:41:53,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:42:29] 2026-01-14 20:41:54,027 | INFO     | time since job start (4382s) is within the limit (349056.0s)
[2026-01-14 15:42:29] 2026-01-14 20:41:56,032 | INFO     | time since job start (4384s) is within the limit (349056.0s)
[2026-01-14 15:42:29] 2026-01-14 20:41:56,222 | INFO     | monitor loop #327: job 0:6969484783 is in state 'finished'
[2026-01-14 15:42:29] 2026-01-14 20:41:56,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:42:29] 2026-01-14 20:41:56,617 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-14 15:42:29] 2026-01-14 20:41:56,621 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1812.25
[2026-01-14 15:42:29] 2026-01-14 20:41:56,623 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969484783/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 15:42:29] 2026-01-14 20:41:56,624 | INFO     | extracted standard info from prmon json
[2026-01-14 15:42:29] 2026-01-14 20:41:56,624 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 15:42:29] 2026-01-14 20:41:56,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 15:42:29] 2026-01-14 20:41:56,625 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 15:42:29] 2026-01-14 20:41:56,625 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 15:42:29] 2026-01-14 20:41:56,627 | INFO     | fitting pss+swap vs Time
[2026-01-14 15:42:29] 2026-01-14 20:41:56,628 | INFO     | sum of square deviations: 85136480.0
[2026-01-14 15:42:29] 2026-01-14 20:41:56,628 | INFO     | sum of deviations: -7980478476.0
[2026-01-14 15:42:29] 2026-01-14 20:41:56,628 | INFO     | mean x: 1768421220.0
[2026-01-14 15:42:29] 2026-01-14 20:41:56,629 | INFO     | mean y: 2738141.0
[2026-01-14 15:42:29] 2026-01-14 20:41:56,629 | INFO     | intersect: 165770074102.1727
[2026-01-14 15:42:29] 2026-01-14 20:41:56,629 | INFO     | chi2: 0.0660113184395935
[2026-01-14 15:42:29] 2026-01-14 20:41:56,629 | INFO     | current memory leak: -93.74 B/s (using 65 data points, chi2=0.07)
[2026-01-14 15:42:29] 2026-01-14 20:41:56,630 | INFO     | could have reported an average CPU frequency of 2028 MHz (6 samples)
[2026-01-14 15:42:29] 2026-01-14 20:41:56,630 | INFO     | ..............................
[2026-01-14 15:42:29] 2026-01-14 20:41:56,630 | INFO     | . Timing measurements:
[2026-01-14 15:42:29] 2026-01-14 20:41:56,630 | INFO     | . get job = 0 s
[2026-01-14 15:42:29] 2026-01-14 20:41:56,631 | INFO     | . initial setup = 2 s
[2026-01-14 15:42:29] 2026-01-14 20:41:56,631 | INFO     | . payload setup = 8 s
[2026-01-14 15:42:29] 2026-01-14 20:41:56,631 | INFO     | . stage-in = 0 s
[2026-01-14 15:42:29] 2026-01-14 20:41:56,631 | INFO     | . payload execution = 4346 s
[2026-01-14 15:42:29] 2026-01-14 20:41:56,631 | INFO     | . stage-out = 0 s
[2026-01-14 15:42:29] 2026-01-14 20:41:56,631 | INFO     | . log creation = 0 s
[2026-01-14 15:42:29] 2026-01-14 20:41:56,631 | INFO     | ..............................
[2026-01-14 15:42:29] 2026-01-14 20:41:57,186 | INFO     | 
[2026-01-14 15:42:29] 2026-01-14 20:41:57,186 | INFO     | job summary report
[2026-01-14 15:42:29] 2026-01-14 20:41:57,186 | INFO     | --------------------------------------------------
[2026-01-14 15:42:29] 2026-01-14 20:41:57,187 | INFO     | PanDA job id: 6969484783
[2026-01-14 15:42:29] 2026-01-14 20:41:57,187 | INFO     | task id: 48215263
[2026-01-14 15:42:29] 2026-01-14 20:41:57,187 | INFO     | errors: (none)
[2026-01-14 15:42:29] 2026-01-14 20:41:57,187 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 15:42:29] 2026-01-14 20:41:57,187 | INFO     | pilot state: finished 
[2026-01-14 15:42:29] 2026-01-14 20:41:57,188 | INFO     | transexitcode: 0
[2026-01-14 15:42:29] 2026-01-14 20:41:57,188 | INFO     | exeerrorcode: 0
[2026-01-14 15:42:29] 2026-01-14 20:41:57,188 | INFO     | exeerrordiag: 
[2026-01-14 15:42:29] 2026-01-14 20:41:57,188 | INFO     | exitcode: 0
[2026-01-14 15:42:29] 2026-01-14 20:41:57,188 | INFO     | exitmsg: OK
[2026-01-14 15:42:29] 2026-01-14 20:41:57,188 | INFO     | cpuconsumptiontime: 32430 s
[2026-01-14 15:42:29] 2026-01-14 20:41:57,189 | INFO     | nevents: 400
[2026-01-14 15:42:29] 2026-01-14 20:41:57,189 | INFO     | neventsw: 0
[2026-01-14 15:42:29] 2026-01-14 20:41:57,189 | INFO     | pid: 25384
[2026-01-14 15:42:29] 2026-01-14 20:41:57,189 | INFO     | pgrp: 25384
[2026-01-14 15:42:29] 2026-01-14 20:41:57,189 | INFO     | corecount: 8
[2026-01-14 15:42:29] 2026-01-14 20:41:57,189 | INFO     | event service: False
[2026-01-14 15:42:29] 2026-01-14 20:41:57,190 | INFO     | sizes: {0: 2283951, 6: 2284213, 11: 2284241, 4358: 2310288, 4359: 2319286, 4360: 2319342, 4367: 2319664}
[2026-01-14 15:42:29] 2026-01-14 20:41:57,190 | INFO     | --------------------------------------------------
[2026-01-14 15:42:29] 2026-01-14 20:41:57,190 | INFO     | 
[2026-01-14 15:42:29] 2026-01-14 20:41:57,190 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-14 15:42:29] 2026-01-14 20:41:57,215 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,216 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,216 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,216 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,217 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,217 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,218 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,218 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,218 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,218 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 15:42:29] 2026-01-14 20:41:57,218 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,218 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 15:42:29] 2026-01-14 20:41:57,219 | INFO     | job 6969484783 has completed (purged errors)
[2026-01-14 15:42:29] 2026-01-14 20:41:57,219 | INFO     | overall cleanup function is called
[2026-01-14 15:42:29] 2026-01-14 20:41:58,227 | INFO     | --- collectZombieJob: --- 10, [25384]
[2026-01-14 15:42:29] 2026-01-14 20:41:58,227 | INFO     | zombie collector waiting for pid 25384
[2026-01-14 15:42:29] 2026-01-14 20:41:58,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 15:42:29] 2026-01-14 20:41:58,228 | INFO     | collected zombie processes
[2026-01-14 15:42:29] 2026-01-14 20:41:58,228 | INFO     | will attempt to kill all subprocesses of pid=25384
[2026-01-14 15:42:29] 2026-01-14 20:41:58,309 | INFO     | process IDs to be killed: [25384] (in reverse order)
[2026-01-14 15:42:29] 2026-01-14 20:41:58,364 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 15:42:29] 2026-01-14 20:41:58,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 15:42:29] 2026-01-14 20:41:58,369 | INFO     | did not find any defunct processes belonging to 25384
[2026-01-14 15:42:29] 2026-01-14 20:41:58,373 | INFO     | did not find any defunct processes belonging to 25384
[2026-01-14 15:42:29] 2026-01-14 20:41:58,373 | INFO     | ready for new job
[2026-01-14 15:42:29] 2026-01-14 20:41:58,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 15:42:29] 2026-01-14 20:41:58,374 | INFO     | ***************************************
[2026-01-14 15:42:29] 2026-01-14 20:41:58,375 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 15:42:29] 2026-01-14 20:41:58,375 | INFO     | ***************************************
[2026-01-14 15:42:29] 2026-01-14 20:41:58,375 | INFO     | 
[2026-01-14 15:42:29] 2026-01-14 20:41:58,375 | INFO     | architecture information:
[2026-01-14 15:42:29] 2026-01-14 20:41:58,376 | INFO     | executing command: cat /etc/os-release
[2026-01-14 15:42:29] 2026-01-14 20:41:58,393 | INFO     | cat /etc/os-release:
[2026-01-14 15:42:29] NAME="CentOS Linux"
[2026-01-14 15:42:29] VERSION="7 (Core)"
[2026-01-14 15:42:29] ID="centos"
[2026-01-14 15:42:29] ID_LIKE="rhel fedora"
[2026-01-14 15:42:29] VERSION_ID="7"
[2026-01-14 15:42:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 15:42:29] ANSI_COLOR="0;31"
[2026-01-14 15:42:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 15:42:29] HOME_URL="https://www.centos.org/"
[2026-01-14 15:42:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 15:42:29] 
[2026-01-14 15:42:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 15:42:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 15:42:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 15:42:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 15:42:29] 
[2026-01-14 15:42:29] 2026-01-14 20:41:58,393 | INFO     | ***************************************
[2026-01-14 15:42:29] 2026-01-14 20:41:58,895 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-14 15:42:29] 2026-01-14 20:41:58,912 | INFO     | sufficient remaining disk space (17868783616 B)
[2026-01-14 15:42:29] 2026-01-14 20:41:58,913 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 15:42:29] 2026-01-14 20:41:58,913 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 15:42:29] 2026-01-14 20:41:58,913 | INFO     | update_server=False
[2026-01-14 15:42:29] 2026-01-14 20:41:58,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 15:42:29] 2026-01-14 20:41:59,107 | INFO     | [monitor] cgroup control has ended
[2026-01-14 15:42:29] 2026-01-14 20:41:59,633 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 15:42:29] 2026-01-14 20:41:59,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:42:29] 2026-01-14 20:41:59,727 | INFO     | aborting loop
[2026-01-14 15:42:29] 2026-01-14 20:41:59,811 | INFO     | all payload control threads have been joined
[2026-01-14 15:42:29] 2026-01-14 20:41:59,919 | INFO     | [job] retrieve thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:41:59,977 | INFO     | all data control threads have been joined
[2026-01-14 15:42:29] 2026-01-14 20:42:00,026 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 15:42:29] 2026-01-14 20:42:00,223 | INFO     | all job control threads have been joined
[2026-01-14 15:42:29] 2026-01-14 20:42:00,370 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:00,397 | INFO     | [payload] validate_post thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:00,579 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:00,657 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:00,733 | INFO     | [job] job monitor thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:00,816 | INFO     | [payload] control thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:00,983 | INFO     | [data] control thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:01,068 | INFO     | [data] copytool_in thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:01,075 | INFO     | [job] validate thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:01,228 | INFO     | [job] control thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:01,345 | INFO     | [payload] failed_post thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:01,639 | INFO     | [data] copytool_out thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:01,723 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:42:29] 2026-01-14 20:42:02,728 | INFO     | [job] queue monitor thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:04,032 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:09,814 | INFO     | job.realtimelogging is not enabled
[2026-01-14 15:42:29] 2026-01-14 20:42:10,820 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 15:42:29] 2026-01-14 20:42:11,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660867643200)>', '<ExcThread(monitor, started 140660296374016)>']
[2026-01-14 15:42:29] 2026-01-14 20:42:16,767 | INFO     | all workflow threads have been joined
[2026-01-14 15:42:29] 2026-01-14 20:42:16,767 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 15:42:29] 2026-01-14 20:42:16,767 | INFO     | traces error code: 0
[2026-01-14 15:42:29] 2026-01-14 20:42:16,768 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 15:42:29] 2026-01-14 20:42:29,249 | INFO     | PID=18956 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-14 15:42:29] 2026-01-14 20:42:29,249 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 15:42:29] 2026-01-14 20:42:29,250 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 15:42:29] 2026-01-14 20:42:29,250 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 15:42:29] 2026-01-14 20:42:29,250 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 15:42:29] 2026-01-14 20:42:29,250 | INFO     | [monitor] control thread has ended
[2026-01-14 15:42:29] 2026-01-14 20:42:29,345 [wrapper] ==== pilot stdout END ====
[2026-01-14 15:42:29] 2026-01-14 20:42:29,350 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 15:42:29] 2026-01-14 20:42:29,354 [wrapper] pilotpid: 18956
[2026-01-14 15:42:29] 2026-01-14 20:42:29,358 [wrapper] Pilot exit status: 0
[2026-01-14 15:42:29] 2026-01-14 20:42:29,376 [wrapper] pandaids: 6969484783
[2026-01-14 15:42:29] 2026-01-14 20:42:29,421 [wrapper] cleanup supervisor_pilot 23348 18957
[2026-01-14 15:42:29] 2026-01-14 20:42:29,427 [wrapper] Test setup, not cleaning
[2026-01-14 15:42:29] 2026-01-14 20:42:29,431 [wrapper] apfmon messages muted
[2026-01-14 15:42:29] 2026-01-14 20:42:29,436 [wrapper] ==== wrapper stdout END ====
[2026-01-14 15:42:29] 2026-01-14 20:42:29,441 [wrapper] ==== wrapper stderr END ====
[2026-01-14 15:42:29]  *** Error codes and diagnostics ***
[2026-01-14 15:42:29]     "exeErrorCode": 0,
[2026-01-14 15:42:29]     "exeErrorDiag": "",
[2026-01-14 15:42:29]     "pilotErrorCode": 0,
[2026-01-14 15:42:29]     "pilotErrorDiag": "",
[2026-01-14 15:42:29]  *** Listing of results directory ***
[2026-01-14 15:42:29] total 731064
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas    579449 Jan 14 09:17 pilot3.tar.gz
[2026-01-14 15:42:29] -rwx------ 1 boincer umatlas     36322 Jan 14 09:21 runpilot2-wrapper.sh
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas      5112 Jan 14 09:25 queuedata.json
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas       100 Jan 14 14:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 15:42:29] -rwxr-xr-x 1 boincer umatlas      7986 Jan 14 14:28 run_atlas
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas       105 Jan 14 14:28 job.xml
[2026-01-14 15:42:29] -rw-r--r-- 2 boincer umatlas 590209782 Jan 14 14:28 EVNT.32794306._001040.pool.root.1
[2026-01-14 15:42:29] -rw-r--r-- 2 boincer umatlas     15847 Jan 14 14:28 start_atlas.sh
[2026-01-14 15:42:29] drwxrwx--x 2 boincer umatlas      4096 Jan 14 14:28 shared
[2026-01-14 15:42:29] -rw-r--r-- 2 boincer umatlas    592406 Jan 14 14:28 input.tar.gz
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas         0 Jan 14 14:28 boinc_lockfile
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas      2508 Jan 14 14:28 pandaJob.out
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas        57 Jan 14 14:28 setup.sh.local
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas    998072 Jan 14 14:28 agis_schedconf.cvmfs.json
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas   1516246 Jan 14 14:28 agis_ddmendpoints.agis.ALL.json
[2026-01-14 15:42:29] drwx------ 5 boincer umatlas      4096 Jan 14 14:28 pilot3
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas      5909 Jan 14 15:36 init_data.xml
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas 152565736 Jan 14 15:41 HITS.48215263._025969.pool.root.1
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas       531 Jan 14 15:41 boinc_task_state.xml
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas      1044 Jan 14 15:41 memory_monitor_summary.json
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas    317671 Jan 14 15:41 log.48215263._025969.job.log.tgz.1
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas        95 Jan 14 15:41 pilot_heartbeat.json
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas      7847 Jan 14 15:41 heartbeat.json
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas      8192 Jan 14 15:42 boinc_mmap_file
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas        27 Jan 14 15:42 wrapper_checkpoint.txt
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas       745 Jan 14 15:42 pilotlog.txt
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas    637639 Jan 14 15:42 log.48215263._025969.job.log.1
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas       357 Jan 14 15:42 output.list
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas       620 Jan 14 15:42 runtime_log
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas    972800 Jan 14 15:42 result.tar.gz
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas      9342 Jan 14 15:42 runtime_log.err
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas       658 Jan 14 15:42 2NANDmavG08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoYrKDmBOSidn.diag
[2026-01-14 15:42:29] -rw-r--r-- 1 boincer umatlas     21860 Jan 14 15:42 stderr.txt
[2026-01-14 15:42:29] HITS file was successfully produced:
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas 152565736 Jan 14 15:41 shared/HITS.pool.root.1
[2026-01-14 15:42:29]  *** Contents of shared directory: ***
[2026-01-14 15:42:29] total 726928
[2026-01-14 15:42:29] -rw-r--r-- 2 boincer umatlas 590209782 Jan 14 14:28 ATLAS.root_0
[2026-01-14 15:42:29] -rw-r--r-- 2 boincer umatlas     15847 Jan 14 14:28 start_atlas.sh
[2026-01-14 15:42:29] -rw-r--r-- 2 boincer umatlas    592406 Jan 14 14:28 input.tar.gz
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas 152565736 Jan 14 15:41 HITS.pool.root.1
[2026-01-14 15:42:29] -rw------- 1 boincer umatlas    972800 Jan 14 15:42 result.tar.gz
15:42:31 (15207): run_atlas exited; CPU time 32401.032339
15:42:31 (15207): called boinc_finish(0)

</stderr_txt>
]]>

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