Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:02:00 (1579475): wrapper (7.7.26015): starting
22:02:00 (1579475): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 22:02:00] Arguments: --nthreads 3
[2026-01-14 22:02:00] Threads: 3
[2026-01-14 22:02:00] Checking for CVMFS
[2026-01-14 22:02:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 22:02:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 22:02:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 22:02:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 22:02:00] 2.9.2.0 1053361 1284 80096 155144 1 57 22799443 36864001 0 130560 0 1385500 99.992 49708 25206 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 22:02:00] CVMFS is ok
[2026-01-14 22:02:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 22:02:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 22:02:00] Further information can be found at the LHC@home message board.
[2026-01-14 22:02:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 22:02:00] Checking for apptainer binary...
[2026-01-14 22:02:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 22:02:00] Running /usr/bin/apptainer --version
[2026-01-14 22:02:00] apptainer version 1.4.1-1.1
[2026-01-14 22:02:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 22:02:00] magicA246a
[2026-01-14 22:02:00] apptainer works
[2026-01-14 22:02:00] Set ATHENA_PROC_NUMBER=3
[2026-01-14 22:02:00] Set ATHENA_CORE_NUMBER=3
[2026-01-14 22:02:00] Starting ATLAS job with PandaID=6969524961
[2026-01-14 22:02:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 22:57:15]  *** The last 200 lines of the pilot log: ***
[2026-01-14 22:57:15] 2026-01-14 21:56:48,874 | INFO     | process IDs to be killed: [1589649] (in reverse order)
[2026-01-14 22:57:15] 2026-01-14 21:56:48,904 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 22:57:15] 2026-01-14 21:56:48,904 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 22:57:15] 2026-01-14 21:56:48,906 | INFO     | did not find any defunct processes belonging to 1589649
[2026-01-14 22:57:15] 2026-01-14 21:56:48,908 | INFO     | did not find any defunct processes belonging to 1589649
[2026-01-14 22:57:15] 2026-01-14 21:56:48,908 | INFO     | ready for new job
[2026-01-14 22:57:15] 2026-01-14 21:56:48,908 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 22:57:15] 2026-01-14 21:56:48,908 | INFO     | ***************************************
[2026-01-14 22:57:15] 2026-01-14 21:56:48,908 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 22:57:15] 2026-01-14 21:56:48,908 | INFO     | ***************************************
[2026-01-14 22:57:15] 2026-01-14 21:56:48,908 | INFO     | 
[2026-01-14 22:57:15] 2026-01-14 21:56:48,909 | INFO     | architecture information:
[2026-01-14 22:57:15] 2026-01-14 21:56:48,909 | INFO     | executing command: cat /etc/os-release
[2026-01-14 22:57:15] 2026-01-14 21:56:48,918 | INFO     | cat /etc/os-release:
[2026-01-14 22:57:15] NAME="CentOS Linux"
[2026-01-14 22:57:15] VERSION="7 (Core)"
[2026-01-14 22:57:15] ID="centos"
[2026-01-14 22:57:15] ID_LIKE="rhel fedora"
[2026-01-14 22:57:15] VERSION_ID="7"
[2026-01-14 22:57:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 22:57:15] ANSI_COLOR="0;31"
[2026-01-14 22:57:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 22:57:15] HOME_URL="https://www.centos.org/"
[2026-01-14 22:57:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 22:57:15] 
[2026-01-14 22:57:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 22:57:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 22:57:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 22:57:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 22:57:15] 
[2026-01-14 22:57:15] 2026-01-14 21:56:48,918 | INFO     | ***************************************
[2026-01-14 22:57:15] 2026-01-14 21:56:49,421 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 22:57:15] 2026-01-14 21:56:49,433 | INFO     | sufficient remaining disk space (281584599040 B)
[2026-01-14 22:57:15] 2026-01-14 21:56:49,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 22:57:15] 2026-01-14 21:56:49,434 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 22:57:15] 2026-01-14 21:56:49,434 | INFO     | update_server=False
[2026-01-14 22:57:15] 2026-01-14 21:56:49,434 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 22:57:15] 2026-01-14 21:56:49,434 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 22:57:15] 2026-01-14 21:56:49,434 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-14 22:57:15] 2026-01-14 21:56:49,434 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 22:57:15] 2026-01-14 21:56:49,434 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 22:57:15] 2026-01-14 21:56:49,434 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 22:57:15] 2026-01-14 21:56:49,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 22:57:15] 2026-01-14 21:56:49,885 | INFO     | all data control threads have been joined
[2026-01-14 22:57:15] 2026-01-14 21:56:50,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 22:57:15] 2026-01-14 21:56:50,296 | INFO     | aborting loop
[2026-01-14 22:57:15] 2026-01-14 21:56:50,438 | INFO     | [job] queue monitor thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:50,439 | INFO     | [job] retrieve thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:50,835 | INFO     | all payload control threads have been joined
[2026-01-14 22:57:15] 2026-01-14 21:56:50,891 | INFO     | [data] control thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:50,997 | INFO     | all job control threads have been joined
[2026-01-14 22:57:15] 2026-01-14 21:56:51,302 | INFO     | [job] job monitor thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:51,320 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:51,352 | INFO     | [data] copytool_in thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:51,357 | INFO     | [payload] failed_post thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:51,630 | INFO     | [data] copytool_out thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:51,812 | INFO     | [job] validate thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:51,840 | INFO     | [payload] control thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:51,871 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:51,927 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:51,955 | INFO     | [payload] validate_post thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:52,002 | INFO     | [job] control thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:56:52,343 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 22:57:15] 2026-01-14 21:56:56,350 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:57:00,274 | INFO     | job.realtimelogging is not enabled
[2026-01-14 22:57:15] 2026-01-14 21:57:01,279 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 22:57:15] 2026-01-14 21:57:09,388 | INFO     | [monitor] cgroup control has ended
[2026-01-14 22:57:15] 2026-01-14 21:57:10,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379677636416)>', '<ExcThread(monitor, started 140379051517696)>']
[2026-01-14 22:57:15] 2026-01-14 21:57:10,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 22:57:15] 2026-01-14 21:57:10,539 | INFO     | [monitor] control thread has ended
[2026-01-14 22:57:15] 2026-01-14 21:57:15,478 | INFO     | all workflow threads have been joined
[2026-01-14 22:57:15] 2026-01-14 21:57:15,478 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 22:57:15] 2026-01-14 21:57:15,478 | INFO     | traces error code: 0
[2026-01-14 22:57:15] 2026-01-14 21:57:15,478 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 22:57:15] 2026-01-14 21:57:15,533 [wrapper] ==== pilot stdout END ====
[2026-01-14 22:57:15] 2026-01-14 21:57:15,535 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 22:57:15] 2026-01-14 21:57:15,538 [wrapper] pilotpid: 1583196
[2026-01-14 22:57:15] 2026-01-14 21:57:15,540 [wrapper] Pilot exit status: 0
[2026-01-14 22:57:15] 2026-01-14 21:57:15,547 [wrapper] pandaids: 6969524961
[2026-01-14 22:57:15] 2026-01-14 21:57:15,566 [wrapper] cleanup supervisor_pilot 1599488 1583197
[2026-01-14 22:57:15] 2026-01-14 21:57:15,569 [wrapper] Test setup, not cleaning
[2026-01-14 22:57:15] 2026-01-14 21:57:15,571 [wrapper] apfmon messages muted
[2026-01-14 22:57:15] 2026-01-14 21:57:15,574 [wrapper] ==== wrapper stdout END ====
[2026-01-14 22:57:15] 2026-01-14 21:57:15,576 [wrapper] ==== wrapper stderr END ====
[2026-01-14 22:57:15]  *** Error codes and diagnostics ***
[2026-01-14 22:57:15]     "exeErrorCode": 0,
[2026-01-14 22:57:15]     "exeErrorDiag": "",
[2026-01-14 22:57:15]     "pilotErrorCode": 0,
[2026-01-14 22:57:15]     "pilotErrorDiag": "",
[2026-01-14 22:57:15]  *** Listing of results directory ***
[2026-01-14 22:57:15] total 730844
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc    579449 Jan 14 17:41 pilot3.tar.gz
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc      5112 Jan 14 17:44 queuedata.json
[2026-01-14 22:57:15] -rwx------ 1 boinc boinc     36322 Jan 14 17:45 runpilot2-wrapper.sh
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc       100 Jan 14 22:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 22:57:15] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 22:02 run_atlas
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc       105 Jan 14 22:02 job.xml
[2026-01-14 22:57:15] -rw-r--r-- 2 boinc boinc 590194027 Jan 14 22:02 EVNT.32794306._001153.pool.root.1
[2026-01-14 22:57:15] drwxrwx--x 2 boinc boinc      4096 Jan 14 22:02 shared
[2026-01-14 22:57:15] -rw-r--r-- 2 boinc boinc    592406 Jan 14 22:02 input.tar.gz
[2026-01-14 22:57:15] -rw-r--r-- 2 boinc boinc     15847 Jan 14 22:02 start_atlas.sh
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc         0 Jan 14 22:02 boinc_setup_complete
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc      6447 Jan 14 22:02 init_data.xml
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc         0 Jan 14 22:02 boinc_lockfile
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc      2508 Jan 14 22:02 pandaJob.out
[2026-01-14 22:57:15] -rw------- 1 boinc boinc    999596 Jan 14 22:02 agis_schedconf.cvmfs.json
[2026-01-14 22:57:15] -rw------- 1 boinc boinc   1516246 Jan 14 22:02 agis_ddmendpoints.agis.ALL.json
[2026-01-14 22:57:15] drwx------ 5 boinc boinc      4096 Jan 14 22:02 pilot3
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc       529 Jan 14 22:56 boinc_task_state.xml
[2026-01-14 22:57:15] -rw------- 1 boinc boinc        95 Jan 14 22:56 pilot_heartbeat.json
[2026-01-14 22:57:15] -rw------- 1 boinc boinc 152836674 Jan 14 22:56 HITS.48215263._028797.pool.root.1
[2026-01-14 22:57:15] -rw------- 1 boinc boinc      1017 Jan 14 22:56 memory_monitor_summary.json
[2026-01-14 22:57:15] -rw------- 1 boinc boinc    220726 Jan 14 22:56 log.48215263._028797.job.log.tgz.1
[2026-01-14 22:57:15] -rw------- 1 boinc boinc      7756 Jan 14 22:56 heartbeat.json
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc      8192 Jan 14 22:56 boinc_mmap_file
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc        26 Jan 14 22:56 wrapper_checkpoint.txt
[2026-01-14 22:57:15] -rw------- 1 boinc boinc      4628 Jan 14 22:57 pilotlog.txt
[2026-01-14 22:57:15] -rw------- 1 boinc boinc    499801 Jan 14 22:57 log.48215263._028797.job.log.1
[2026-01-14 22:57:15] -rw------- 1 boinc boinc       357 Jan 14 22:57 output.list
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc       620 Jan 14 22:57 runtime_log
[2026-01-14 22:57:15] -rw------- 1 boinc boinc    737280 Jan 14 22:57 result.tar.gz
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc      8917 Jan 14 22:57 runtime_log.err
[2026-01-14 22:57:15] -rw------- 1 boinc boinc       660 Jan 14 22:57 DYaMDmyAJ08n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2olKDmi0ZTEo.diag
[2026-01-14 22:57:15] -rw-r--r-- 1 boinc boinc     10104 Jan 14 22:57 stderr.txt
[2026-01-14 22:57:15] HITS file was successfully produced:
[2026-01-14 22:57:15] -rw------- 1 boinc boinc 152836674 Jan 14 22:56 shared/HITS.pool.root.1
[2026-01-14 22:57:15]  *** Contents of shared directory: ***
[2026-01-14 22:57:15] total 726944
[2026-01-14 22:57:15] -rw-r--r-- 2 boinc boinc 590194027 Jan 14 22:02 ATLAS.root_0
[2026-01-14 22:57:15] -rw-r--r-- 2 boinc boinc    592406 Jan 14 22:02 input.tar.gz
[2026-01-14 22:57:15] -rw-r--r-- 2 boinc boinc     15847 Jan 14 22:02 start_atlas.sh
[2026-01-14 22:57:15] -rw------- 1 boinc boinc 152836674 Jan 14 22:56 HITS.pool.root.1
[2026-01-14 22:57:15] -rw------- 1 boinc boinc    737280 Jan 14 22:57 result.tar.gz
22:57:16 (1579475): run_atlas exited; CPU time 9261.305242
22:57:16 (1579475): called boinc_finish(0)

</stderr_txt>
]]>

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