Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:24:34 (3035178): wrapper (7.7.26015): starting
20:24:34 (3035178): wrapper: running run_atlas (--nthreads 4)
[2026-01-14 20:24:34] Arguments: --nthreads 4
[2026-01-14 20:24:34] Threads: 4
[2026-01-14 20:24:34] Checking for CVMFS
[2026-01-14 20:24:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 20:24:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 20:24:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 20:24:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 20:24:35] 2.9.2.0 2429254 1386 92100 155142 0 57 21676365 36864000 0 130560 0 1586552 99.993 55145 15174 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 20:24:35] CVMFS is ok
[2026-01-14 20:24:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 20:24:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 20:24:35] Further information can be found at the LHC@home message board.
[2026-01-14 20:24:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 20:24:35] Checking for apptainer binary...
[2026-01-14 20:24:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 20:24:35] Running /usr/bin/apptainer --version
[2026-01-14 20:24:35] apptainer version 1.4.1-1.1
[2026-01-14 20:24:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 20:24:35] thA309
[2026-01-14 20:24:35] apptainer works
[2026-01-14 20:24:35] Set ATHENA_PROC_NUMBER=4
[2026-01-14 20:24:35] Set ATHENA_CORE_NUMBER=4
[2026-01-14 20:24:35] Starting ATLAS job with PandaID=6969523354
[2026-01-14 20:24:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 21:15:53]  *** The last 200 lines of the pilot log: ***
[2026-01-14 21:15:53] 2026-01-14 20:15:18,732 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 21:15:53] 2026-01-14 20:15:18,732 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 21:15:53] 2026-01-14 20:15:18,732 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 21:15:53] 2026-01-14 20:15:18,732 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 21:15:53] 2026-01-14 20:15:18,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 21:15:53] 2026-01-14 20:15:18,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 21:15:53] 2026-01-14 20:15:18,732 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 21:15:53] 2026-01-14 20:15:18,733 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 21:15:53] 2026-01-14 20:15:18,733 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 21:15:53] 2026-01-14 20:15:18,733 | INFO     | job 6969523354 has completed (purged errors)
[2026-01-14 21:15:53] 2026-01-14 20:15:18,733 | INFO     | overall cleanup function is called
[2026-01-14 21:15:53] 2026-01-14 20:15:19,739 | INFO     | --- collectZombieJob: --- 10, [3045564]
[2026-01-14 21:15:53] 2026-01-14 20:15:19,740 | INFO     | zombie collector waiting for pid 3045564
[2026-01-14 21:15:53] 2026-01-14 20:15:19,740 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 21:15:53] 2026-01-14 20:15:19,740 | INFO     | collected zombie processes
[2026-01-14 21:15:53] 2026-01-14 20:15:19,740 | INFO     | will attempt to kill all subprocesses of pid=3045564
[2026-01-14 21:15:53] 2026-01-14 20:15:19,792 | INFO     | process IDs to be killed: [3045564] (in reverse order)
[2026-01-14 21:15:53] 2026-01-14 20:15:19,828 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 21:15:53] 2026-01-14 20:15:19,828 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 21:15:53] 2026-01-14 20:15:19,830 | INFO     | did not find any defunct processes belonging to 3045564
[2026-01-14 21:15:53] 2026-01-14 20:15:19,832 | INFO     | did not find any defunct processes belonging to 3045564
[2026-01-14 21:15:53] 2026-01-14 20:15:19,832 | INFO     | ready for new job
[2026-01-14 21:15:53] 2026-01-14 20:15:19,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 21:15:53] 2026-01-14 20:15:19,833 | INFO     | ***************************************
[2026-01-14 21:15:53] 2026-01-14 20:15:19,833 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 21:15:53] 2026-01-14 20:15:19,833 | INFO     | ***************************************
[2026-01-14 21:15:53] 2026-01-14 20:15:19,833 | INFO     | 
[2026-01-14 21:15:53] 2026-01-14 20:15:19,833 | INFO     | architecture information:
[2026-01-14 21:15:53] 2026-01-14 20:15:19,834 | INFO     | executing command: cat /etc/os-release
[2026-01-14 21:15:53] 2026-01-14 20:15:19,849 | INFO     | cat /etc/os-release:
[2026-01-14 21:15:53] NAME="CentOS Linux"
[2026-01-14 21:15:53] VERSION="7 (Core)"
[2026-01-14 21:15:53] ID="centos"
[2026-01-14 21:15:53] ID_LIKE="rhel fedora"
[2026-01-14 21:15:53] VERSION_ID="7"
[2026-01-14 21:15:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 21:15:53] ANSI_COLOR="0;31"
[2026-01-14 21:15:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 21:15:53] HOME_URL="https://www.centos.org/"
[2026-01-14 21:15:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 21:15:53] 
[2026-01-14 21:15:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 21:15:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 21:15:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 21:15:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 21:15:53] 
[2026-01-14 21:15:53] 2026-01-14 20:15:19,849 | INFO     | ***************************************
[2026-01-14 21:15:53] 2026-01-14 20:15:20,352 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 21:15:53] 2026-01-14 20:15:20,371 | INFO     | sufficient remaining disk space (238466105344 B)
[2026-01-14 21:15:53] 2026-01-14 20:15:20,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 21:15:53] 2026-01-14 20:15:20,372 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 21:15:53] 2026-01-14 20:15:20,372 | INFO     | update_server=False
[2026-01-14 21:15:53] 2026-01-14 20:15:20,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 21:15:53] 2026-01-14 20:15:20,372 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 21:15:53] 2026-01-14 20:15:20,680 | INFO     | all data control threads have been joined
[2026-01-14 21:15:53] 2026-01-14 20:15:20,723 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 21:15:53] 2026-01-14 20:15:20,724 | INFO     | aborting loop
[2026-01-14 21:15:53] 2026-01-14 20:15:20,903 | INFO     | all payload control threads have been joined
[2026-01-14 21:15:53] 2026-01-14 20:15:21,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 21:15:53] 2026-01-14 20:15:21,377 | INFO     | [job] retrieve thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:21,377 | INFO     | [job] queue monitor thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:21,425 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:21,493 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:21,687 | INFO     | [data] control thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:21,729 | INFO     | [job] job monitor thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:21,847 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 21:15:53] 2026-01-14 20:15:21,887 | INFO     | [payload] failed_post thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:21,909 | INFO     | [payload] control thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:21,958 | INFO     | all job control threads have been joined
[2026-01-14 21:15:53] 2026-01-14 20:15:22,007 | INFO     | [data] copytool_in thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:22,372 | INFO     | [payload] validate_post thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:22,687 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:22,774 | INFO     | [job] validate thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:22,964 | INFO     | [job] control thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:23,059 | INFO     | [data] copytool_out thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:25,854 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:31,022 | INFO     | job.realtimelogging is not enabled
[2026-01-14 21:15:53] 2026-01-14 20:15:32,028 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 21:15:53] 2026-01-14 20:15:46,827 | INFO     | [monitor] cgroup control has ended
[2026-01-14 21:15:53] 2026-01-14 20:15:48,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140190255900480)>', '<ExcThread(monitor, started 140189376689920)>']
[2026-01-14 21:15:53] 2026-01-14 20:15:50,590 | INFO     | PID=3038970 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 21:15:53] 2026-01-14 20:15:50,590 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 21:15:53] 2026-01-14 20:15:50,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 21:15:53] 2026-01-14 20:15:50,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 21:15:53] 2026-01-14 20:15:50,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 21:15:53] 2026-01-14 20:15:50,590 | INFO     | [monitor] control thread has ended
[2026-01-14 21:15:53] 2026-01-14 20:15:53,600 | INFO     | all workflow threads have been joined
[2026-01-14 21:15:53] 2026-01-14 20:15:53,601 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 21:15:53] 2026-01-14 20:15:53,601 | INFO     | traces error code: 0
[2026-01-14 21:15:53] 2026-01-14 20:15:53,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 21:15:53] 2026-01-14 20:15:53,683 [wrapper] ==== pilot stdout END ====
[2026-01-14 21:15:53] 2026-01-14 20:15:53,687 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 21:15:53] 2026-01-14 20:15:53,691 [wrapper] pilotpid: 3038970
[2026-01-14 21:15:53] 2026-01-14 20:15:53,695 [wrapper] Pilot exit status: 0
[2026-01-14 21:15:53] 2026-01-14 20:15:53,707 [wrapper] pandaids: 6969523354
[2026-01-14 21:15:53] 2026-01-14 20:15:53,732 [wrapper] cleanup supervisor_pilot 3055295 3038971
[2026-01-14 21:15:53] 2026-01-14 20:15:53,735 [wrapper] Test setup, not cleaning
[2026-01-14 21:15:53] 2026-01-14 20:15:53,740 [wrapper] apfmon messages muted
[2026-01-14 21:15:53] 2026-01-14 20:15:53,743 [wrapper] ==== wrapper stdout END ====
[2026-01-14 21:15:53] 2026-01-14 20:15:53,747 [wrapper] ==== wrapper stderr END ====
[2026-01-14 21:15:53]  *** Error codes and diagnostics ***
[2026-01-14 21:15:53]     "exeErrorCode": 0,
[2026-01-14 21:15:53]     "exeErrorDiag": "",
[2026-01-14 21:15:53]     "pilotErrorCode": 0,
[2026-01-14 21:15:53]     "pilotErrorDiag": "",
[2026-01-14 21:15:53]  *** Listing of results directory ***
[2026-01-14 21:15:53] total 743908
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc      5112 Jan 14 17:41 queuedata.json
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc    579449 Jan 14 17:41 pilot3.tar.gz
[2026-01-14 21:15:53] -rwx------ 1 boinc boinc     36322 Jan 14 17:42 runpilot2-wrapper.sh
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc       100 Jan 14 20:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 21:15:53] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 20:24 run_atlas
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc       105 Jan 14 20:24 job.xml
[2026-01-14 21:15:53] -rw-r--r-- 2 boinc boinc 597207478 Jan 14 20:24 EVNT.32794306._001111.pool.root.1
[2026-01-14 21:15:53] -rw-r--r-- 2 boinc boinc    592401 Jan 14 20:24 input.tar.gz
[2026-01-14 21:15:53] -rw-r--r-- 2 boinc boinc     15847 Jan 14 20:24 start_atlas.sh
[2026-01-14 21:15:53] drwxrwx--x 2 boinc boinc      4096 Jan 14 20:24 shared
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc         0 Jan 14 20:24 boinc_setup_complete
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc      6377 Jan 14 20:24 init_data.xml
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc         0 Jan 14 20:24 boinc_lockfile
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc      2508 Jan 14 20:24 pandaJob.out
[2026-01-14 21:15:53] -rw------- 1 boinc boinc    998072 Jan 14 20:24 agis_schedconf.cvmfs.json
[2026-01-14 21:15:53] -rw------- 1 boinc boinc   1516246 Jan 14 20:24 agis_ddmendpoints.agis.ALL.json
[2026-01-14 21:15:53] drwx------ 5 boinc boinc      4096 Jan 14 20:24 pilot3
[2026-01-14 21:15:53] -rw------- 1 boinc boinc 159227351 Jan 14 21:14 HITS.48215263._027755.pool.root.1
[2026-01-14 21:15:53] -rw------- 1 boinc boinc        95 Jan 14 21:15 pilot_heartbeat.json
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc       530 Jan 14 21:15 boinc_task_state.xml
[2026-01-14 21:15:53] -rw------- 1 boinc boinc      1015 Jan 14 21:15 memory_monitor_summary.json
[2026-01-14 21:15:53] -rw------- 1 boinc boinc    244099 Jan 14 21:15 log.48215263._027755.job.log.tgz.1
[2026-01-14 21:15:53] -rw------- 1 boinc boinc      7749 Jan 14 21:15 heartbeat.json
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc        27 Jan 14 21:15 wrapper_checkpoint.txt
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc      8192 Jan 14 21:15 boinc_mmap_file
[2026-01-14 21:15:53] -rw------- 1 boinc boinc      4824 Jan 14 21:15 pilotlog.txt
[2026-01-14 21:15:53] -rw------- 1 boinc boinc    466055 Jan 14 21:15 log.48215263._027755.job.log.1
[2026-01-14 21:15:53] -rw------- 1 boinc boinc       357 Jan 14 21:15 output.list
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc       620 Jan 14 21:15 runtime_log
[2026-01-14 21:15:53] -rw------- 1 boinc boinc    727040 Jan 14 21:15 result.tar.gz
[2026-01-14 21:15:53] -rw------- 1 boinc boinc       657 Jan 14 21:15 wVCLDm27I08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRnrKDmFpjrQm.diag
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc      8897 Jan 14 21:15 runtime_log.err
[2026-01-14 21:15:53] -rw-r--r-- 1 boinc boinc     11819 Jan 14 21:15 stderr.txt
[2026-01-14 21:15:53] HITS file was successfully produced:
[2026-01-14 21:15:53] -rw------- 1 boinc boinc 159227351 Jan 14 21:14 shared/HITS.pool.root.1
[2026-01-14 21:15:53]  *** Contents of shared directory: ***
[2026-01-14 21:15:53] total 740024
[2026-01-14 21:15:53] -rw-r--r-- 2 boinc boinc 597207478 Jan 14 20:24 ATLAS.root_0
[2026-01-14 21:15:53] -rw-r--r-- 2 boinc boinc    592401 Jan 14 20:24 input.tar.gz
[2026-01-14 21:15:53] -rw-r--r-- 2 boinc boinc     15847 Jan 14 20:24 start_atlas.sh
[2026-01-14 21:15:53] -rw------- 1 boinc boinc 159227351 Jan 14 21:14 HITS.pool.root.1
[2026-01-14 21:15:53] -rw------- 1 boinc boinc    727040 Jan 14 21:15 result.tar.gz
21:15:55 (3035178): run_atlas exited; CPU time 11123.365314
21:15:55 (3035178): called boinc_finish(0)

</stderr_txt>
]]>

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