Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:46:26 (2989659): wrapper (7.7.26015): starting
18:46:26 (2989659): wrapper: running run_atlas (--nthreads 4)
[2026-01-14 18:46:26] Arguments: --nthreads 4
[2026-01-14 18:46:26] Threads: 4
[2026-01-14 18:46:26] Checking for CVMFS
[2026-01-14 18:46:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 18:46:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 18:46:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 18:46:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 18:46:27] 2.9.2.0 2429254 1288 90688 155139 2 57 21663150 36864001 0 130560 0 1466239 99.992 51021 14486 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 18:46:27] CVMFS is ok
[2026-01-14 18:46:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 18:46:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 18:46:27] Further information can be found at the LHC@home message board.
[2026-01-14 18:46:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 18:46:27] Checking for apptainer binary...
[2026-01-14 18:46:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 18:46:27] Running /usr/bin/apptainer --version
[2026-01-14 18:46:27] apptainer version 1.4.1-1.1
[2026-01-14 18:46:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 18:46:27] thA309
[2026-01-14 18:46:27] apptainer works
[2026-01-14 18:46:27] Set ATHENA_PROC_NUMBER=4
[2026-01-14 18:46:27] Set ATHENA_CORE_NUMBER=4
[2026-01-14 18:46:27] Starting ATLAS job with PandaID=6969484431
[2026-01-14 18:46:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 19:36:50]  *** The last 200 lines of the pilot log: ***
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | job 6969484431 has completed (purged errors)
[2026-01-14 19:36:50] 2026-01-14 18:36:19,061 | INFO     | overall cleanup function is called
[2026-01-14 19:36:50] 2026-01-14 18:36:20,068 | INFO     | --- collectZombieJob: --- 10, [3000035]
[2026-01-14 19:36:50] 2026-01-14 18:36:20,068 | INFO     | zombie collector waiting for pid 3000035
[2026-01-14 19:36:50] 2026-01-14 18:36:20,068 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 19:36:50] 2026-01-14 18:36:20,068 | INFO     | collected zombie processes
[2026-01-14 19:36:50] 2026-01-14 18:36:20,068 | INFO     | will attempt to kill all subprocesses of pid=3000035
[2026-01-14 19:36:50] 2026-01-14 18:36:20,120 | INFO     | process IDs to be killed: [3000035] (in reverse order)
[2026-01-14 19:36:50] 2026-01-14 18:36:20,157 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 19:36:50] 2026-01-14 18:36:20,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 19:36:50] 2026-01-14 18:36:20,159 | INFO     | did not find any defunct processes belonging to 3000035
[2026-01-14 19:36:50] 2026-01-14 18:36:20,161 | INFO     | did not find any defunct processes belonging to 3000035
[2026-01-14 19:36:50] 2026-01-14 18:36:20,161 | INFO     | ready for new job
[2026-01-14 19:36:50] 2026-01-14 18:36:20,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 19:36:50] 2026-01-14 18:36:20,162 | INFO     | ***************************************
[2026-01-14 19:36:50] 2026-01-14 18:36:20,162 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 19:36:50] 2026-01-14 18:36:20,162 | INFO     | ***************************************
[2026-01-14 19:36:50] 2026-01-14 18:36:20,162 | INFO     | 
[2026-01-14 19:36:50] 2026-01-14 18:36:20,162 | INFO     | architecture information:
[2026-01-14 19:36:50] 2026-01-14 18:36:20,163 | INFO     | executing command: cat /etc/os-release
[2026-01-14 19:36:50] 2026-01-14 18:36:20,178 | INFO     | cat /etc/os-release:
[2026-01-14 19:36:50] NAME="CentOS Linux"
[2026-01-14 19:36:50] VERSION="7 (Core)"
[2026-01-14 19:36:50] ID="centos"
[2026-01-14 19:36:50] ID_LIKE="rhel fedora"
[2026-01-14 19:36:50] VERSION_ID="7"
[2026-01-14 19:36:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 19:36:50] ANSI_COLOR="0;31"
[2026-01-14 19:36:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 19:36:50] HOME_URL="https://www.centos.org/"
[2026-01-14 19:36:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 19:36:50] 
[2026-01-14 19:36:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 19:36:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 19:36:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 19:36:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 19:36:50] 
[2026-01-14 19:36:50] 2026-01-14 18:36:20,178 | INFO     | ***************************************
[2026-01-14 19:36:50] 2026-01-14 18:36:20,681 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 19:36:50] 2026-01-14 18:36:20,699 | INFO     | sufficient remaining disk space (237892534272 B)
[2026-01-14 19:36:50] 2026-01-14 18:36:20,699 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 19:36:50] 2026-01-14 18:36:20,700 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 19:36:50] 2026-01-14 18:36:20,700 | INFO     | update_server=False
[2026-01-14 19:36:50] 2026-01-14 18:36:20,700 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 19:36:50] 2026-01-14 18:36:20,700 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 19:36:50] 2026-01-14 18:36:20,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 19:36:50] 2026-01-14 18:36:20,800 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 19:36:50] 2026-01-14 18:36:20,800 | INFO     | aborting loop
[2026-01-14 19:36:50] 2026-01-14 18:36:21,253 | INFO     | all data control threads have been joined
[2026-01-14 19:36:50] 2026-01-14 18:36:21,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 19:36:50] 2026-01-14 18:36:21,534 | INFO     | all job control threads have been joined
[2026-01-14 19:36:50] 2026-01-14 18:36:21,705 | INFO     | [job] queue monitor thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:21,706 | INFO     | [job] retrieve thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:21,806 | INFO     | [job] job monitor thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:21,865 | INFO     | [data] copytool_in thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:22,059 | INFO     | all payload control threads have been joined
[2026-01-14 19:36:50] 2026-01-14 18:36:22,085 | INFO     | [payload] validate_post thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:22,259 | INFO     | [data] control thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:22,540 | INFO     | [job] control thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:22,577 | INFO     | [job] validate thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:22,730 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:22,764 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:22,978 | INFO     | [payload] failed_post thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:23,053 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:23,064 | INFO     | [payload] control thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:23,472 | INFO     | [data] copytool_out thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:24,704 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:31,552 | INFO     | job.realtimelogging is not enabled
[2026-01-14 19:36:50] 2026-01-14 18:36:32,558 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 19:36:50] 2026-01-14 18:36:38,480 | INFO     | [monitor] cgroup control has ended
[2026-01-14 19:36:50] 2026-01-14 18:36:39,687 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140251412842304)>', '<ExcThread(monitor, started 140250923910912)>']
[2026-01-14 19:36:50] 2026-01-14 18:36:44,713 | INFO     | all workflow threads have been joined
[2026-01-14 19:36:50] 2026-01-14 18:36:44,713 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 19:36:50] 2026-01-14 18:36:44,713 | INFO     | traces error code: 0
[2026-01-14 19:36:50] 2026-01-14 18:36:44,713 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 19:36:50] 2026-01-14 18:36:50,604 | INFO     | PID=2993460 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 19:36:50] 2026-01-14 18:36:50,604 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 19:36:50] 2026-01-14 18:36:50,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 19:36:50] 2026-01-14 18:36:50,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 19:36:50] 2026-01-14 18:36:50,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 19:36:50] 2026-01-14 18:36:50,604 | INFO     | [monitor] control thread has ended
[2026-01-14 19:36:50] 2026-01-14 18:36:50,684 [wrapper] ==== pilot stdout END ====
[2026-01-14 19:36:50] 2026-01-14 18:36:50,688 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 19:36:50] 2026-01-14 18:36:50,692 [wrapper] pilotpid: 2993460
[2026-01-14 19:36:50] 2026-01-14 18:36:50,696 [wrapper] Pilot exit status: 0
[2026-01-14 19:36:50] 2026-01-14 18:36:50,709 [wrapper] pandaids: 6969484431
[2026-01-14 19:36:50] 2026-01-14 18:36:50,732 [wrapper] cleanup supervisor_pilot 3009741 2993461
[2026-01-14 19:36:50] 2026-01-14 18:36:50,736 [wrapper] Test setup, not cleaning
[2026-01-14 19:36:50] 2026-01-14 18:36:50,740 [wrapper] apfmon messages muted
[2026-01-14 19:36:50] 2026-01-14 18:36:50,744 [wrapper] ==== wrapper stdout END ====
[2026-01-14 19:36:50] 2026-01-14 18:36:50,748 [wrapper] ==== wrapper stderr END ====
[2026-01-14 19:36:50]  *** Error codes and diagnostics ***
[2026-01-14 19:36:50]     "exeErrorCode": 0,
[2026-01-14 19:36:50]     "exeErrorDiag": "",
[2026-01-14 19:36:50]     "pilotErrorCode": 0,
[2026-01-14 19:36:50]     "pilotErrorDiag": "",
[2026-01-14 19:36:50]  *** Listing of results directory ***
[2026-01-14 19:36:50] total 738060
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc    579449 Jan 14 15:17 pilot3.tar.gz
[2026-01-14 19:36:50] -rwx------ 1 boinc boinc     36322 Jan 14 15:21 runpilot2-wrapper.sh
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc      5112 Jan 14 15:25 queuedata.json
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc       100 Jan 14 18:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 19:36:50] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 18:46 run_atlas
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc       105 Jan 14 18:46 job.xml
[2026-01-14 19:36:50] -rw-r--r-- 2 boinc boinc 594550089 Jan 14 18:46 EVNT.32794306._001030.pool.root.1
[2026-01-14 19:36:50] -rw-r--r-- 2 boinc boinc    592404 Jan 14 18:46 input.tar.gz
[2026-01-14 19:36:50] -rw-r--r-- 2 boinc boinc     15847 Jan 14 18:46 start_atlas.sh
[2026-01-14 19:36:50] drwxrwx--x 2 boinc boinc      4096 Jan 14 18:46 shared
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc         0 Jan 14 18:46 boinc_setup_complete
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc      6377 Jan 14 18:46 init_data.xml
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc         0 Jan 14 18:46 boinc_lockfile
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc      2508 Jan 14 18:46 pandaJob.out
[2026-01-14 19:36:50] -rw------- 1 boinc boinc    997956 Jan 14 18:46 agis_schedconf.cvmfs.json
[2026-01-14 19:36:50] -rw------- 1 boinc boinc   1516246 Jan 14 18:46 agis_ddmendpoints.agis.ALL.json
[2026-01-14 19:36:50] drwx------ 5 boinc boinc      4096 Jan 14 18:46 pilot3
[2026-01-14 19:36:50] -rw------- 1 boinc boinc        95 Jan 14 19:35 pilot_heartbeat.json
[2026-01-14 19:36:50] -rw------- 1 boinc boinc 155936067 Jan 14 19:35 HITS.48215263._025718.pool.root.1
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc       530 Jan 14 19:35 boinc_task_state.xml
[2026-01-14 19:36:50] -rw------- 1 boinc boinc      1016 Jan 14 19:36 memory_monitor_summary.json
[2026-01-14 19:36:50] -rw------- 1 boinc boinc    233600 Jan 14 19:36 log.48215263._025718.job.log.tgz.1
[2026-01-14 19:36:50] -rw------- 1 boinc boinc      7760 Jan 14 19:36 heartbeat.json
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc      8192 Jan 14 19:36 boinc_mmap_file
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc        27 Jan 14 19:36 wrapper_checkpoint.txt
[2026-01-14 19:36:50] -rw------- 1 boinc boinc       747 Jan 14 19:36 pilotlog.txt
[2026-01-14 19:36:50] -rw------- 1 boinc boinc    457918 Jan 14 19:36 log.48215263._025718.job.log.1
[2026-01-14 19:36:50] -rw------- 1 boinc boinc       357 Jan 14 19:36 output.list
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc       620 Jan 14 19:36 runtime_log
[2026-01-14 19:36:50] -rw------- 1 boinc boinc    706560 Jan 14 19:36 result.tar.gz
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc      8897 Jan 14 19:36 runtime_log.err
[2026-01-14 19:36:50] -rw------- 1 boinc boinc       657 Jan 14 19:36 kX5LDmZvG08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaOlKDmlwmGyn.diag
[2026-01-14 19:36:50] -rw-r--r-- 1 boinc boinc     11714 Jan 14 19:36 stderr.txt
[2026-01-14 19:36:50] HITS file was successfully produced:
[2026-01-14 19:36:50] -rw------- 1 boinc boinc 155936067 Jan 14 19:35 shared/HITS.pool.root.1
[2026-01-14 19:36:50]  *** Contents of shared directory: ***
[2026-01-14 19:36:50] total 734196
[2026-01-14 19:36:50] -rw-r--r-- 2 boinc boinc 594550089 Jan 14 18:46 ATLAS.root_0
[2026-01-14 19:36:50] -rw-r--r-- 2 boinc boinc    592404 Jan 14 18:46 input.tar.gz
[2026-01-14 19:36:50] -rw-r--r-- 2 boinc boinc     15847 Jan 14 18:46 start_atlas.sh
[2026-01-14 19:36:50] -rw------- 1 boinc boinc 155936067 Jan 14 19:35 HITS.pool.root.1
[2026-01-14 19:36:50] -rw------- 1 boinc boinc    706560 Jan 14 19:36 result.tar.gz
19:36:52 (2989659): run_atlas exited; CPU time 10978.970771
19:36:52 (2989659): called boinc_finish(0)

</stderr_txt>
]]>

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