Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
17:09:52 (435210): wrapper (7.7.26015): starting
17:09:52 (435210): wrapper: running run_atlas (--nthreads 8)
[2026-01-14 17:09:52] Arguments: --nthreads 8
[2026-01-14 17:09:52] Threads: 8
[2026-01-14 17:09:52] Checking for CVMFS
[2026-01-14 17:10:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 17:10:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 17:10:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 17:10:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 17:10:51] 2.13.3.0 435425 0 25324 155138 3 1 3173596 4096001 0 130560 0 0 100.000 1 0 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-14 17:10:51] CVMFS is ok
[2026-01-14 17:10:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 17:10:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 17:10:51] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-14 17:10:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-14 17:10:51] Further information can be found at the LHC@home message board.
[2026-01-14 17:10:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 17:10:51] Checking for apptainer binary...
[2026-01-14 17:10:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 17:10:51] Running /usr/bin/apptainer --version
[2026-01-14 17:10:51] apptainer version 1.4.5
[2026-01-14 17:10:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 17:10:51] lab01ubuntu
[2026-01-14 17:10:51] apptainer works
[2026-01-14 17:10:51] Set ATHENA_PROC_NUMBER=8
[2026-01-14 17:10:51] Set ATHENA_CORE_NUMBER=8
[2026-01-14 17:10:51] Starting ATLAS job with PandaID=6969471209
[2026-01-14 17:10:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 18:19:44]  *** The last 200 lines of the pilot log: ***
[2026-01-14 18:19:44] 2026-01-14 18:18:52,363 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 18:19:44] 2026-01-14 18:18:52,770 | INFO     | time since job start (4046s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:18:54,795 | INFO     | time since job start (4048s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:18:54,950 | INFO     | job 6969471209 has state=finished
[2026-01-14 18:19:44] 2026-01-14 18:18:54,950 | INFO     | preparing for final server update for job 6969471209 in state='finished'
[2026-01-14 18:19:44] 2026-01-14 18:18:54,953 | INFO     | this job has now completed (state=finished)
[2026-01-14 18:19:44] 2026-01-14 18:18:54,953 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 18:19:44] 2026-01-14 18:18:54,954 | INFO     | log transfer has been attempted: DONE
[2026-01-14 18:19:44] 2026-01-14 18:18:54,954 | INFO     | job 6969471209 has finished - writing final server update
[2026-01-14 18:19:44] 2026-01-14 18:18:54,955 | INFO     | total number of processed events: 400 (read)
[2026-01-14 18:19:44] 2026-01-14 18:18:54,958 | INFO     | executing command: lscpu
[2026-01-14 18:19:44] 2026-01-14 18:18:55,009 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 18:19:44] 2026-01-14 18:18:55,145 | WARNING  | process 445932 can no longer be monitored (due to stat problems) - aborting
[2026-01-14 18:19:44] 2026-01-14 18:18:55,147 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6969471209/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 18:19:44] 2026-01-14 18:18:55,223 | INFO     | number of running child processes to parent process 445932: 1
[2026-01-14 18:19:44] 2026-01-14 18:18:55,224 | INFO     | maximum number of monitored processes: 6
[2026-01-14 18:19:44] 2026-01-14 18:18:56,802 | INFO     | time since job start (4050s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:18:57,725 | INFO     | monitor loop #311: job 0:6969471209 is in state 'finished'
[2026-01-14 18:19:44] 2026-01-14 18:18:57,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 18:19:44] 2026-01-14 18:18:58,809 | INFO     | time since job start (4052s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:19:00,228 | INFO     | monitor loop #312: job 0:6969471209 is in state 'finished'
[2026-01-14 18:19:44] 2026-01-14 18:19:00,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 18:19:44] 2026-01-14 18:19:00,838 | INFO     | time since job start (4054s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:19:02,732 | INFO     | monitor loop #313: job 0:6969471209 is in state 'finished'
[2026-01-14 18:19:44] 2026-01-14 18:19:02,733 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 18:19:44] 2026-01-14 18:19:02,844 | INFO     | time since job start (4056s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:19:04,051 | INFO     | PID=439510 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 18:19:44] 2026-01-14 18:19:05,052 | INFO     | time since job start (4059s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:19:05,236 | INFO     | monitor loop #314: job 0:6969471209 is in state 'finished'
[2026-01-14 18:19:44] 2026-01-14 18:19:05,237 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 18:19:44] 2026-01-14 18:19:07,058 | INFO     | time since job start (4061s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:19:07,740 | INFO     | monitor loop #315: job 0:6969471209 is in state 'finished'
[2026-01-14 18:19:44] 2026-01-14 18:19:07,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 18:19:44] 2026-01-14 18:19:09,060 | INFO     | time since job start (4063s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:19:10,245 | INFO     | monitor loop #316: job 0:6969471209 is in state 'finished'
[2026-01-14 18:19:44] 2026-01-14 18:19:10,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 18:19:44] 2026-01-14 18:19:11,066 | INFO     | time since job start (4065s) is within the limit (349056.0s)
[2026-01-14 18:19:44] 2026-01-14 18:19:12,149 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-14 18:19:44] 2026-01-14 18:19:12,151 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 2893.0279999999993
[2026-01-14 18:19:44] 2026-01-14 18:19:12,154 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6969471209/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 18:19:44] 2026-01-14 18:19:12,156 | INFO     | extracted standard info from prmon json
[2026-01-14 18:19:44] 2026-01-14 18:19:12,156 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 18:19:44] 2026-01-14 18:19:12,157 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 18:19:44] 2026-01-14 18:19:12,158 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 18:19:44] 2026-01-14 18:19:12,158 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 18:19:44] 2026-01-14 18:19:12,161 | INFO     | fitting pss+swap vs Time
[2026-01-14 18:19:44] 2026-01-14 18:19:12,162 | INFO     | sum of square deviations: 63666310.0
[2026-01-14 18:19:44] 2026-01-14 18:19:12,163 | INFO     | sum of deviations: 5202872756.000001
[2026-01-14 18:19:44] 2026-01-14 18:19:12,163 | INFO     | mean x: 1768412807.0
[2026-01-14 18:19:44] 2026-01-14 18:19:12,164 | INFO     | mean y: 2668058.966101695
[2026-01-14 18:19:44] 2026-01-14 18:19:12,164 | INFO     | intersect: -144513745958.14575
[2026-01-14 18:19:44] 2026-01-14 18:19:12,164 | INFO     | chi2: 0.4401774412509513
[2026-01-14 18:19:44] 2026-01-14 18:19:12,165 | INFO     | current memory leak: 81.72 B/s (using 59 data points, chi2=0.44)
[2026-01-14 18:19:44] 2026-01-14 18:19:12,166 | INFO     | could have reported an average CPU frequency of 2893 MHz (6 samples)
[2026-01-14 18:19:44] 2026-01-14 18:19:12,166 | INFO     | ..............................
[2026-01-14 18:19:44] 2026-01-14 18:19:12,166 | INFO     | . Timing measurements:
[2026-01-14 18:19:44] 2026-01-14 18:19:12,167 | INFO     | . get job = 0 s
[2026-01-14 18:19:44] 2026-01-14 18:19:12,167 | INFO     | . initial setup = 4 s
[2026-01-14 18:19:44] 2026-01-14 18:19:12,167 | INFO     | . payload setup = 15 s
[2026-01-14 18:19:44] 2026-01-14 18:19:12,167 | INFO     | . stage-in = 0 s
[2026-01-14 18:19:44] 2026-01-14 18:19:12,168 | INFO     | . payload execution = 4002 s
[2026-01-14 18:19:44] 2026-01-14 18:19:12,168 | INFO     | . stage-out = 1 s
[2026-01-14 18:19:44] 2026-01-14 18:19:12,168 | INFO     | . log creation = 0 s
[2026-01-14 18:19:44] 2026-01-14 18:19:12,169 | INFO     | ..............................
[2026-01-14 18:19:44] 2026-01-14 18:19:12,438 | INFO     | 
[2026-01-14 18:19:44] 2026-01-14 18:19:12,439 | INFO     | job summary report
[2026-01-14 18:19:44] 2026-01-14 18:19:12,439 | INFO     | --------------------------------------------------
[2026-01-14 18:19:44] 2026-01-14 18:19:12,440 | INFO     | PanDA job id: 6969471209
[2026-01-14 18:19:44] 2026-01-14 18:19:12,440 | INFO     | task id: 48215263
[2026-01-14 18:19:44] 2026-01-14 18:19:12,440 | INFO     | errors: (none)
[2026-01-14 18:19:44] 2026-01-14 18:19:12,440 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 18:19:44] 2026-01-14 18:19:12,441 | INFO     | pilot state: finished 
[2026-01-14 18:19:44] 2026-01-14 18:19:12,441 | INFO     | transexitcode: 0
[2026-01-14 18:19:44] 2026-01-14 18:19:12,441 | INFO     | exeerrorcode: 0
[2026-01-14 18:19:44] 2026-01-14 18:19:12,442 | INFO     | exeerrordiag: 
[2026-01-14 18:19:44] 2026-01-14 18:19:12,442 | INFO     | exitcode: 0
[2026-01-14 18:19:44] 2026-01-14 18:19:12,442 | INFO     | exitmsg: OK
[2026-01-14 18:19:44] 2026-01-14 18:19:12,442 | INFO     | cpuconsumptiontime: 27892 s
[2026-01-14 18:19:44] 2026-01-14 18:19:12,443 | INFO     | nevents: 400
[2026-01-14 18:19:44] 2026-01-14 18:19:12,443 | INFO     | neventsw: 0
[2026-01-14 18:19:44] 2026-01-14 18:19:12,443 | INFO     | pid: 445932
[2026-01-14 18:19:44] 2026-01-14 18:19:12,444 | INFO     | pgrp: 445932
[2026-01-14 18:19:44] 2026-01-14 18:19:12,444 | INFO     | corecount: 8
[2026-01-14 18:19:44] 2026-01-14 18:19:12,444 | INFO     | event service: False
[2026-01-14 18:19:44] 2026-01-14 18:19:12,444 | INFO     | sizes: {0: 2283786, 1: 2283985, 11: 2284247, 12: 2284275, 4021: 2310060, 4023: 2319256, 4043: 2319394}
[2026-01-14 18:19:44] 2026-01-14 18:19:12,445 | INFO     | --------------------------------------------------
[2026-01-14 18:19:44] 2026-01-14 18:19:12,445 | INFO     | 
[2026-01-14 18:19:44] 2026-01-14 18:19:12,445 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-01-14 18:19:44] 2026-01-14 18:19:12,490 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,491 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,491 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,491 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,492 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,492 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,492 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,493 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,493 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,493 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,496 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 18:19:44] 2026-01-14 18:19:12,496 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,496 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 18:19:44] 2026-01-14 18:19:12,497 | INFO     | job 6969471209 has completed (purged errors)
[2026-01-14 18:19:44] 2026-01-14 18:19:12,498 | INFO     | overall cleanup function is called
[2026-01-14 18:19:44] 2026-01-14 18:19:13,509 | INFO     | --- collectZombieJob: --- 10, [445932]
[2026-01-14 18:19:44] 2026-01-14 18:19:13,510 | INFO     | zombie collector waiting for pid 445932
[2026-01-14 18:19:44] 2026-01-14 18:19:13,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 18:19:44] 2026-01-14 18:19:13,510 | INFO     | collected zombie processes
[2026-01-14 18:19:44] 2026-01-14 18:19:13,511 | INFO     | will attempt to kill all subprocesses of pid=445932
[2026-01-14 18:19:44] 2026-01-14 18:19:13,676 | INFO     | process IDs to be killed: [445932] (in reverse order)
[2026-01-14 18:19:44] 2026-01-14 18:19:13,754 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 18:19:44] 2026-01-14 18:19:13,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 18:19:44] 2026-01-14 18:19:13,759 | INFO     | did not find any defunct processes belonging to 445932
[2026-01-14 18:19:44] 2026-01-14 18:19:13,764 | INFO     | did not find any defunct processes belonging to 445932
[2026-01-14 18:19:44] 2026-01-14 18:19:13,765 | INFO     | ready for new job
[2026-01-14 18:19:44] 2026-01-14 18:19:13,765 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 18:19:44] 2026-01-14 18:19:13,769 | INFO     | ***************************************
[2026-01-14 18:19:44] 2026-01-14 18:19:13,769 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 18:19:44] 2026-01-14 18:19:13,769 | INFO     | ***************************************
[2026-01-14 18:19:44] 2026-01-14 18:19:13,769 | INFO     | 
[2026-01-14 18:19:44] 2026-01-14 18:19:13,771 | INFO     | pilot is running in a VM
[2026-01-14 18:19:44] 2026-01-14 18:19:13,771 | INFO     | architecture information:
[2026-01-14 18:19:44] 2026-01-14 18:19:13,772 | INFO     | executing command: cat /etc/os-release
[2026-01-14 18:19:44] 2026-01-14 18:19:13,799 | INFO     | cat /etc/os-release:
[2026-01-14 18:19:44] NAME="CentOS Linux"
[2026-01-14 18:19:44] VERSION="7 (Core)"
[2026-01-14 18:19:44] ID="centos"
[2026-01-14 18:19:44] ID_LIKE="rhel fedora"
[2026-01-14 18:19:44] VERSION_ID="7"
[2026-01-14 18:19:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 18:19:44] ANSI_COLOR="0;31"
[2026-01-14 18:19:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 18:19:44] HOME_URL="https://www.centos.org/"
[2026-01-14 18:19:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 18:19:44] 
[2026-01-14 18:19:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 18:19:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 18:19:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 18:19:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 18:19:44] 
[2026-01-14 18:19:44] 2026-01-14 18:19:13,800 | INFO     | ***************************************
[2026-01-14 18:19:44] 2026-01-14 18:19:14,303 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-14 18:19:44] 2026-01-14 18:19:14,356 | INFO     | sufficient remaining disk space (13195280384 B)
[2026-01-14 18:19:44] 2026-01-14 18:19:14,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 18:19:44] 2026-01-14 18:19:14,358 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 18:19:44] 2026-01-14 18:19:14,358 | INFO     | update_server=False
[2026-01-14 18:19:44] 2026-01-14 18:19:14,358 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 18:19:44] 2026-01-14 18:19:14,359 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 18:19:44] 2026-01-14 18:19:14,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 18:19:44] 2026-01-14 18:19:14,362 | INFO     | aborting loop
[2026-01-14 18:19:44] 2026-01-14 18:19:14,440 | INFO     | all data control threads have been joined
[2026-01-14 18:19:44] 2026-01-14 18:19:14,567 | INFO     | all job control threads have been joined
[2026-01-14 18:19:44] 2026-01-14 18:19:15,364 | INFO     | [job] retrieve thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:15,366 | INFO     | [job] queue monitor thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:15,368 | INFO     | [job] job monitor thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:15,399 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 18:19:44] 2026-01-14 18:19:15,446 | INFO     | [data] control thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:15,517 | INFO     | all payload control threads have been joined
[2026-01-14 18:19:44] 2026-01-14 18:19:15,573 | INFO     | [job] control thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:15,807 | INFO     | [payload] failed_post thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:15,858 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:16,063 | INFO     | [job] validate thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:16,141 | INFO     | [data] copytool_in thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:16,367 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:16,523 | INFO     | [payload] control thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:16,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 18:19:44] 2026-01-14 18:19:16,632 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:16,672 | INFO     | [payload] validate_post thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:17,405 | INFO     | [data] copytool_out thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:20,555 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:24,972 | INFO     | job.realtimelogging is not enabled
[2026-01-14 18:19:44] 2026-01-14 18:19:25,978 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 18:19:44] 2026-01-14 18:19:32,458 | INFO     | [monitor] cgroup control has ended
[2026-01-14 18:19:44] 2026-01-14 18:19:34,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136179387180864)>', '<ExcThread(monitor, started 136178867083008)>']
[2026-01-14 18:19:44] 2026-01-14 18:19:39,434 | INFO     | all workflow threads have been joined
[2026-01-14 18:19:44] 2026-01-14 18:19:39,435 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 18:19:44] 2026-01-14 18:19:39,436 | INFO     | traces error code: 0
[2026-01-14 18:19:44] 2026-01-14 18:19:39,437 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 18:19:44] 2026-01-14 18:19:44,309 | INFO     | PID=439510 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 18:19:44] 2026-01-14 18:19:44,310 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 18:19:44] 2026-01-14 18:19:44,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 18:19:44] 2026-01-14 18:19:44,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 18:19:44] 2026-01-14 18:19:44,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 18:19:44] 2026-01-14 18:19:44,310 | INFO     | [monitor] control thread has ended
[2026-01-14 18:19:44] 2026-01-14 18:19:44,497 [wrapper] ==== pilot stdout END ====
[2026-01-14 18:19:44] 2026-01-14 18:19:44,506 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 18:19:44] 2026-01-14 18:19:44,514 [wrapper] pilotpid: 439510
[2026-01-14 18:19:44] 2026-01-14 18:19:44,522 [wrapper] Pilot exit status: 0
[2026-01-14 18:19:44] 2026-01-14 18:19:44,555 [wrapper] pandaids: 6969471209
[2026-01-14 18:19:44] 2026-01-14 18:19:44,631 [wrapper] cleanup supervisor_pilot  454927 439511
[2026-01-14 18:19:44] 2026-01-14 18:19:44,639 [wrapper] Test setup, not cleaning
[2026-01-14 18:19:44] 2026-01-14 18:19:44,647 [wrapper] apfmon messages muted
[2026-01-14 18:19:44] 2026-01-14 18:19:44,656 [wrapper] ==== wrapper stdout END ====
[2026-01-14 18:19:44] 2026-01-14 18:19:44,664 [wrapper] ==== wrapper stderr END ====
[2026-01-14 18:19:44]  *** Error codes and diagnostics ***
[2026-01-14 18:19:44]     "exeErrorCode": 0,
[2026-01-14 18:19:44]     "exeErrorDiag": "",
[2026-01-14 18:19:44]     "pilotErrorCode": 0,
[2026-01-14 18:19:44]     "pilotErrorDiag": "",
[2026-01-14 18:19:44]  *** Listing of results directory ***
[2026-01-14 18:19:44] total 731340
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc    579449 Jan 14 14:17 pilot3.tar.gz
[2026-01-14 18:19:44] -rwx------ 1 boinc boinc     36322 Jan 14 14:20 runpilot2-wrapper.sh
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc      5112 Jan 14 14:25 queuedata.json
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc       100 Jan 14 17:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 18:19:44] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 17:09 run_atlas
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc       105 Jan 14 17:09 job.xml
[2026-01-14 18:19:44] -rw-r--r-- 2 boinc boinc 593733715 Jan 14 17:09 EVNT.32794306._000983.pool.root.1
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc      6317 Jan 14 17:09 init_data.xml
[2026-01-14 18:19:44] -rw-r--r-- 2 boinc boinc     15847 Jan 14 17:09 start_atlas.sh
[2026-01-14 18:19:44] drwxrwx--x 2 boinc boinc      4096 Jan 14 17:09 shared
[2026-01-14 18:19:44] -rw-r--r-- 2 boinc boinc    592405 Jan 14 17:09 input.tar.gz
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc         0 Jan 14 17:09 boinc_lockfile
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc      2508 Jan 14 17:10 pandaJob.out
[2026-01-14 18:19:44] -rw------- 1 boinc boinc    997956 Jan 14 17:11 agis_schedconf.cvmfs.json
[2026-01-14 18:19:44] -rw------- 1 boinc boinc   1516246 Jan 14 17:11 agis_ddmendpoints.agis.ALL.json
[2026-01-14 18:19:44] drwx------ 5 boinc boinc      4096 Jan 14 17:11 pilot3
[2026-01-14 18:19:44] -rw------- 1 boinc boinc 149397487 Jan 14 18:18 HITS.48215263._024545.pool.root.1
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc       530 Jan 14 18:18 boinc_task_state.xml
[2026-01-14 18:19:44] -rw------- 1 boinc boinc      1012 Jan 14 18:18 memory_monitor_summary.json
[2026-01-14 18:19:44] -rw------- 1 boinc boinc    313863 Jan 14 18:18 log.48215263._024545.job.log.tgz.1
[2026-01-14 18:19:44] -rw------- 1 boinc boinc        95 Jan 14 18:18 pilot_heartbeat.json
[2026-01-14 18:19:44] -rw------- 1 boinc boinc      7754 Jan 14 18:19 heartbeat.json
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc        27 Jan 14 18:19 wrapper_checkpoint.txt
[2026-01-14 18:19:44] -rw------- 1 boinc boinc       746 Jan 14 18:19 pilotlog.txt
[2026-01-14 18:19:44] -rw------- 1 boinc boinc    606985 Jan 14 18:19 log.48215263._024545.job.log.1
[2026-01-14 18:19:44] -rw------- 1 boinc boinc       357 Jan 14 18:19 output.list
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc       620 Jan 14 18:19 runtime_log
[2026-01-14 18:19:44] -rw------- 1 boinc boinc    942080 Jan 14 18:19 result.tar.gz
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc      8192 Jan 14 18:19 boinc_mmap_file
[2026-01-14 18:19:44] -rw------- 1 boinc boinc       647 Jan 14 18:19 yKoKDmCvG08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRUrKDmkr6BTm.diag
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc      8903 Jan 14 18:19 runtime_log.err
[2026-01-14 18:19:44] -rw-r--r-- 1 boinc boinc     22487 Jan 14 18:19 stderr.txt
[2026-01-14 18:19:44] HITS file was successfully produced:
[2026-01-14 18:19:44] -rw------- 1 boinc boinc 149397487 Jan 14 18:18 shared/HITS.pool.root.1
[2026-01-14 18:19:44]  *** Contents of shared directory: ***
[2026-01-14 18:19:44] total 727240
[2026-01-14 18:19:44] -rw-r--r-- 2 boinc boinc 593733715 Jan 14 17:09 ATLAS.root_0
[2026-01-14 18:19:44] -rw-r--r-- 2 boinc boinc     15847 Jan 14 17:09 start_atlas.sh
[2026-01-14 18:19:44] -rw-r--r-- 2 boinc boinc    592405 Jan 14 17:09 input.tar.gz
[2026-01-14 18:19:44] -rw------- 1 boinc boinc 149397487 Jan 14 18:18 HITS.pool.root.1
[2026-01-14 18:19:44] -rw------- 1 boinc boinc    942080 Jan 14 18:19 result.tar.gz
18:20:06 (435210): run_atlas exited; CPU time 27896.328300
18:20:06 (435210): called boinc_finish(0)

</stderr_txt>
]]>

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