Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:49:08 (2159841): wrapper (7.7.26015): starting
12:49:08 (2159841): wrapper: running run_atlas (--nthreads 11)
[2026-01-14 12:49:08] Arguments: --nthreads 11
[2026-01-14 12:49:08] Threads: 11
[2026-01-14 12:49:08] Checking for CVMFS
[2026-01-14 12:49:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 12:49:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 12:49:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 12:49:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 12:49:30] 2.13.3.0 11160 100931 404648 155139 3 545 20417735 32935937 19557 16776704 0 290321283 99.515 439993228 40303 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-14 12:49:30] CVMFS is ok
[2026-01-14 12:49:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 12:49:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 12:49:30] Further information can be found at the LHC@home message board.
[2026-01-14 12:49:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 12:49:30] Checking for apptainer binary...
[2026-01-14 12:49:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 12:49:30] Running /usr/bin/apptainer --version
[2026-01-14 12:49:30] apptainer version 1.4.5-2.el9
[2026-01-14 12:49:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 12:49:31] c6-2-29-2.aglt2.org
[2026-01-14 12:49:31] apptainer works
[2026-01-14 12:49:31] Set ATHENA_PROC_NUMBER=11
[2026-01-14 12:49:31] Set ATHENA_CORE_NUMBER=11
[2026-01-14 12:49:31] Starting ATLAS job with PandaID=6969419554
[2026-01-14 12:49:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 14:27:36]  *** The last 200 lines of the pilot log: ***
[2026-01-14 14:27:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-14 14:27:36]  replicas=None
[2026-01-14 14:27:36]  scope=mc23_13p6TeV
[2026-01-14 14:27:36]  status=None
[2026-01-14 14:27:36]  status_code=0
[2026-01-14 14:27:36]  storage_token=
[2026-01-14 14:27:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969419554/log.48215263._019784.job.log.tgz.1
[2026-01-14 14:27:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/1a/log.48215263._019784.job.log.tgz.1
[2026-01-14 14:27:36]  workdir=None
[2026-01-14 14:27:36] ]
[2026-01-14 14:27:36] 2026-01-14 19:26:51,446 | INFO     | transferring file log.48215263._019784.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969419554/log.48215263._019784.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-14 14:27:36] 2026-01-14 19:26:51,447 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969419554/log.48215263._019784.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._019784.job
[2026-01-14 14:27:36] 2026-01-14 19:26:51,470 | INFO     | adding to output.list: log.48215263._019784.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/1a/log.48215263._019784.job.log.tg
[2026-01-14 14:27:36] 2026-01-14 19:26:51,471 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 14:27:36] 2026-01-14 19:26:51,472 | INFO     | summary of transferred files:
[2026-01-14 14:27:36] 2026-01-14 19:26:51,472 | INFO     |  -- lfn=log.48215263._019784.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 14:27:36] 2026-01-14 19:26:51,472 | INFO     | stage-out finished correctly
[2026-01-14 14:27:36] 2026-01-14 19:26:51,582 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 14:27:36] 2026-01-14 19:26:51,688 | INFO     | job 6969419554 has state=finished
[2026-01-14 14:27:36] 2026-01-14 19:26:51,688 | INFO     | preparing for final server update for job 6969419554 in state='finished'
[2026-01-14 14:27:36] 2026-01-14 19:26:51,689 | INFO     | this job has now completed (state=finished)
[2026-01-14 14:27:36] 2026-01-14 19:26:51,689 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 14:27:36] 2026-01-14 19:26:51,689 | INFO     | log transfer has been attempted: DONE
[2026-01-14 14:27:36] 2026-01-14 19:26:51,689 | INFO     | job 6969419554 has finished - writing final server update
[2026-01-14 14:27:36] 2026-01-14 19:26:51,689 | INFO     | total number of processed events: 400 (read)
[2026-01-14 14:27:36] 2026-01-14 19:26:51,690 | INFO     | executing command: lscpu
[2026-01-14 14:27:36] 2026-01-14 19:26:51,750 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 14:27:36] 2026-01-14 19:26:52,172 | WARNING  | process 2176453 can no longer be monitored (due to stat problems) - aborting
[2026-01-14 14:27:36] 2026-01-14 19:26:52,172 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969419554/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 14:27:36] 2026-01-14 19:26:52,494 | INFO     | time since job start (5792s) is within the limit (349056.0s)
[2026-01-14 14:27:36] 2026-01-14 19:26:52,501 | INFO     | number of running child processes to parent process 2176453: 1
[2026-01-14 14:27:36] 2026-01-14 19:26:52,502 | INFO     | maximum number of monitored processes: 6
[2026-01-14 14:27:36] 2026-01-14 19:26:54,501 | INFO     | time since job start (5794s) is within the limit (349056.0s)
[2026-01-14 14:27:36] 2026-01-14 19:26:55,006 | INFO     | monitor loop #389: job 0:6969419554 is in state 'finished'
[2026-01-14 14:27:36] 2026-01-14 19:26:55,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 14:27:36] 2026-01-14 19:26:56,507 | INFO     | time since job start (5796s) is within the limit (349056.0s)
[2026-01-14 14:27:36] 2026-01-14 19:26:57,511 | INFO     | monitor loop #390: job 0:6969419554 is in state 'finished'
[2026-01-14 14:27:36] 2026-01-14 19:26:57,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 14:27:36] 2026-01-14 19:26:57,647 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-14 14:27:36] 2026-01-14 19:26:57,657 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3092.458464285714
[2026-01-14 14:27:36] 2026-01-14 19:26:57,678 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969419554/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 14:27:36] 2026-01-14 19:26:57,679 | INFO     | extracted standard info from prmon json
[2026-01-14 14:27:36] 2026-01-14 19:26:57,679 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 14:27:36] 2026-01-14 19:26:57,679 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 14:27:36] 2026-01-14 19:26:57,680 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 14:27:36] 2026-01-14 19:26:57,680 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 14:27:36] 2026-01-14 19:26:57,682 | INFO     | fitting pss+swap vs Time
[2026-01-14 14:27:36] 2026-01-14 19:26:57,682 | INFO     | sum of square deviations: 204153843.67816097
[2026-01-14 14:27:36] 2026-01-14 19:26:57,682 | INFO     | sum of deviations: -12336417397.333328
[2026-01-14 14:27:36] 2026-01-14 19:26:57,682 | INFO     | mean x: 1768416033.1954024
[2026-01-14 14:27:36] 2026-01-14 19:26:57,683 | INFO     | mean y: 2802800.6666666665
[2026-01-14 14:27:36] 2026-01-14 19:26:57,683 | INFO     | intersect: 106862991786.51175
[2026-01-14 14:27:36] 2026-01-14 19:26:57,683 | INFO     | chi2: 0.16214749589669086
[2026-01-14 14:27:36] 2026-01-14 19:26:57,683 | INFO     | current memory leak: -60.43 B/s (using 87 data points, chi2=0.16)
[2026-01-14 14:27:36] 2026-01-14 19:26:57,683 | INFO     | could have reported an average CPU frequency of 3071 MHz (7 samples)
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | ..............................
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | . Timing measurements:
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | . get job = 0 s
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | . initial setup = 4 s
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | . payload setup = 22 s
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | . stage-in = 0 s
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | . payload execution = 5718 s
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | . stage-out = 1 s
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | . log creation = 0 s
[2026-01-14 14:27:36] 2026-01-14 19:26:57,684 | INFO     | ..............................
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | 
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | job summary report
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | --------------------------------------------------
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | PanDA job id: 6969419554
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | task id: 48215263
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | errors: (none)
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | pilot state: finished 
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | transexitcode: 0
[2026-01-14 14:27:36] 2026-01-14 19:26:57,793 | INFO     | exeerrorcode: 0
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | exeerrordiag: 
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | exitcode: 0
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | exitmsg: OK
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | cpuconsumptiontime: 24849 s
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | nevents: 400
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | neventsw: 0
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | pid: 2176453
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | pgrp: 2176453
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | corecount: 11
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | event service: False
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | sizes: {0: 2283120, 1: 2283805, 2: 2284004, 13: 2284004, 20: 2284322, 24: 2284350, 5744: 2311147, 5747: 2320145, 5748: 2320201, 5754: 2320395}
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | --------------------------------------------------
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | 
[2026-01-14 14:27:36] 2026-01-14 19:26:57,794 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-14 14:27:36] 2026-01-14 19:26:57,889 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,890 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,890 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,890 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 14:27:36] 2026-01-14 19:26:57,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,892 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 14:27:36] 2026-01-14 19:26:57,892 | INFO     | job 6969419554 has completed (purged errors)
[2026-01-14 14:27:36] 2026-01-14 19:26:57,892 | INFO     | overall cleanup function is called
[2026-01-14 14:27:36] 2026-01-14 19:26:58,900 | INFO     | --- collectZombieJob: --- 10, [2176453]
[2026-01-14 14:27:36] 2026-01-14 19:26:58,900 | INFO     | zombie collector waiting for pid 2176453
[2026-01-14 14:27:36] 2026-01-14 19:26:58,900 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 14:27:36] 2026-01-14 19:26:58,900 | INFO     | collected zombie processes
[2026-01-14 14:27:36] 2026-01-14 19:26:58,900 | INFO     | will attempt to kill all subprocesses of pid=2176453
[2026-01-14 14:27:36] 2026-01-14 19:26:59,433 | INFO     | process IDs to be killed: [2176453] (in reverse order)
[2026-01-14 14:27:36] 2026-01-14 19:26:59,538 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 14:27:36] 2026-01-14 19:26:59,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 14:27:36] 2026-01-14 19:26:59,587 | INFO     | did not find any defunct processes belonging to 2176453
[2026-01-14 14:27:36] 2026-01-14 19:26:59,629 | INFO     | did not find any defunct processes belonging to 2176453
[2026-01-14 14:27:36] 2026-01-14 19:26:59,630 | INFO     | ready for new job
[2026-01-14 14:27:36] 2026-01-14 19:26:59,630 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 14:27:36] 2026-01-14 19:26:59,631 | INFO     | ***************************************
[2026-01-14 14:27:36] 2026-01-14 19:26:59,633 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 14:27:36] 2026-01-14 19:26:59,633 | INFO     | ***************************************
[2026-01-14 14:27:36] 2026-01-14 19:26:59,633 | INFO     | 
[2026-01-14 14:27:36] 2026-01-14 19:26:59,636 | INFO     | architecture information:
[2026-01-14 14:27:36] 2026-01-14 19:26:59,636 | INFO     | executing command: cat /etc/os-release
[2026-01-14 14:27:36] 2026-01-14 19:26:59,683 | INFO     | cat /etc/os-release:
[2026-01-14 14:27:36] NAME="CentOS Linux"
[2026-01-14 14:27:36] VERSION="7 (Core)"
[2026-01-14 14:27:36] ID="centos"
[2026-01-14 14:27:36] ID_LIKE="rhel fedora"
[2026-01-14 14:27:36] VERSION_ID="7"
[2026-01-14 14:27:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 14:27:36] ANSI_COLOR="0;31"
[2026-01-14 14:27:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 14:27:36] HOME_URL="https://www.centos.org/"
[2026-01-14 14:27:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 14:27:36] 
[2026-01-14 14:27:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 14:27:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 14:27:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 14:27:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 14:27:36] 
[2026-01-14 14:27:36] 2026-01-14 19:26:59,684 | INFO     | ***************************************
[2026-01-14 14:27:36] 2026-01-14 19:27:00,186 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-14 14:27:36] 2026-01-14 19:27:00,202 | INFO     | sufficient remaining disk space (72182923264 B)
[2026-01-14 14:27:36] 2026-01-14 19:27:00,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 14:27:36] 2026-01-14 19:27:00,202 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 14:27:36] 2026-01-14 19:27:00,202 | INFO     | update_server=False
[2026-01-14 14:27:36] 2026-01-14 19:27:00,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 14:27:36] 2026-01-14 19:27:00,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 14:27:36] 2026-01-14 19:27:00,205 | INFO     | all payload control threads have been joined
[2026-01-14 14:27:36] 2026-01-14 19:27:00,595 | INFO     | all job control threads have been joined
[2026-01-14 14:27:36] 2026-01-14 19:27:00,617 | INFO     | all data control threads have been joined
[2026-01-14 14:27:36] 2026-01-14 19:27:01,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 14:27:36] 2026-01-14 19:27:01,020 | INFO     | aborting loop
[2026-01-14 14:27:36] 2026-01-14 19:27:01,208 | INFO     | [job] retrieve thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:01,216 | INFO     | [payload] control thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:01,427 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:01,431 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:01,601 | INFO     | [job] control thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:01,623 | INFO     | [data] control thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:01,788 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:02,019 | INFO     | [data] copytool_in thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:02,025 | INFO     | [job] job monitor thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:02,134 | INFO     | [payload] failed_post thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:02,212 | INFO     | [data] copytool_out thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:02,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 14:27:36] 2026-01-14 19:27:02,349 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:02,448 | INFO     | [job] validate thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:02,503 | INFO     | [payload] validate_post thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:02,807 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 14:27:36] 2026-01-14 19:27:03,813 | INFO     | [job] queue monitor thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:06,233 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 14:27:36] 2026-01-14 19:27:30,165 | INFO     | PID=2166429 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 14:27:36] 2026-01-14 19:27:30,165 | INFO     | .. there are 24 such processes running
[2026-01-14 14:27:36] 2026-01-14 19:27:30,165 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 14:27:36] 2026-01-14 19:27:30,166 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 14:27:36] 2026-01-14 19:27:30,166 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 14:27:36] 2026-01-14 19:27:30,189 | INFO     | [monitor] cgroup control has ended
[2026-01-14 14:27:36] 2026-01-14 19:27:31,231 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918221715264)>', '<ExcThread(monitor, started 139917711615744)>']
[2026-01-14 14:27:36] 2026-01-14 19:27:32,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 14:27:36] 2026-01-14 19:27:32,177 | INFO     | [monitor] control thread has ended
[2026-01-14 14:27:36] 2026-01-14 19:27:36,257 | INFO     | all workflow threads have been joined
[2026-01-14 14:27:36] 2026-01-14 19:27:36,257 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 14:27:36] 2026-01-14 19:27:36,257 | INFO     | traces error code: 0
[2026-01-14 14:27:36] 2026-01-14 19:27:36,258 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 14:27:36] 2026-01-14 19:27:36,569 [wrapper] ==== pilot stdout END ====
[2026-01-14 14:27:36] 2026-01-14 19:27:36,580 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 14:27:36] 2026-01-14 19:27:36,607 [wrapper] pilotpid: 2166429
[2026-01-14 14:27:36] 2026-01-14 19:27:36,614 [wrapper] Pilot exit status: 0
[2026-01-14 14:27:36] 2026-01-14 19:27:36,628 [wrapper] pandaids: 6969419554
[2026-01-14 14:27:36] 2026-01-14 19:27:36,693 [wrapper] cleanup supervisor_pilot 2459998 2166430
[2026-01-14 14:27:36] 2026-01-14 19:27:36,697 [wrapper] Test setup, not cleaning
[2026-01-14 14:27:36] 2026-01-14 19:27:36,700 [wrapper] apfmon messages muted
[2026-01-14 14:27:36] 2026-01-14 19:27:36,712 [wrapper] ==== wrapper stdout END ====
[2026-01-14 14:27:36] 2026-01-14 19:27:36,715 [wrapper] ==== wrapper stderr END ====
[2026-01-14 14:27:36]  *** Error codes and diagnostics ***
[2026-01-14 14:27:36]     "exeErrorCode": 0,
[2026-01-14 14:27:36]     "exeErrorDiag": "",
[2026-01-14 14:27:36]     "pilotErrorCode": 0,
[2026-01-14 14:27:36]     "pilotErrorDiag": "",
[2026-01-14 14:27:36]  *** Listing of results directory ***
[2026-01-14 14:27:36] total 735640
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 04:29 pilot3.tar.gz
[2026-01-14 14:27:36] -rwx------. 1 boincer umatlas     36322 Jan 14 04:31 runpilot2-wrapper.sh
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 04:33 queuedata.json
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas       100 Jan 14 12:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 14:27:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 14 12:49 run_atlas
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas       105 Jan 14 12:49 job.xml
[2026-01-14 14:27:36] -rw-r--r--. 2 boincer umatlas 594032098 Jan 14 12:49 EVNT.32794306._000793.pool.root.1
[2026-01-14 14:27:36] drwxrwx--x. 2 boincer umatlas      4096 Jan 14 12:49 shared
[2026-01-14 14:27:36] -rw-r--r--. 2 boincer umatlas    592407 Jan 14 12:49 input.tar.gz
[2026-01-14 14:27:36] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 12:49 start_atlas.sh
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas         0 Jan 14 12:49 boinc_lockfile
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas      2506 Jan 14 12:49 pandaJob.out
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas        57 Jan 14 12:49 setup.sh.local
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas    997956 Jan 14 12:50 agis_schedconf.cvmfs.json
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas   1516246 Jan 14 12:50 agis_ddmendpoints.agis.ALL.json
[2026-01-14 14:27:36] drwx------. 5 boincer umatlas      4096 Jan 14 12:50 pilot3
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas       530 Jan 14 14:26 boinc_task_state.xml
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas 152980526 Jan 14 14:26 HITS.48215263._019784.pool.root.1
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas      1042 Jan 14 14:26 memory_monitor_summary.json
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas    376673 Jan 14 14:26 log.48215263._019784.job.log.tgz.1
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas      7828 Jan 14 14:26 heartbeat.json
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas        95 Jan 14 14:27 pilot_heartbeat.json
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas      6841 Jan 14 14:27 init_data.xml
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas      8192 Jan 14 14:27 boinc_mmap_file
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas        27 Jan 14 14:27 wrapper_checkpoint.txt
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas      4824 Jan 14 14:27 pilotlog.txt
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas    799465 Jan 14 14:27 log.48215263._019784.job.log.1
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas       357 Jan 14 14:27 output.list
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas       620 Jan 14 14:27 runtime_log
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas   1198080 Jan 14 14:27 result.tar.gz
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas      9349 Jan 14 14:27 runtime_log.err
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas       653 Jan 14 14:27 N8pMDmjOC08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEsqKDmyAYwSo.diag
[2026-01-14 14:27:36] -rw-r--r--. 1 boincer umatlas     22029 Jan 14 14:27 stderr.txt
[2026-01-14 14:27:36] HITS file was successfully produced:
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas 152980526 Jan 14 14:26 shared/HITS.pool.root.1
[2026-01-14 14:27:36]  *** Contents of shared directory: ***
[2026-01-14 14:27:36] total 731284
[2026-01-14 14:27:36] -rw-r--r--. 2 boincer umatlas 594032098 Jan 14 12:49 ATLAS.root_0
[2026-01-14 14:27:36] -rw-r--r--. 2 boincer umatlas    592407 Jan 14 12:49 input.tar.gz
[2026-01-14 14:27:36] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 12:49 start_atlas.sh
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas 152980526 Jan 14 14:26 HITS.pool.root.1
[2026-01-14 14:27:36] -rw-------. 1 boincer umatlas   1198080 Jan 14 14:27 result.tar.gz
14:27:37 (2159841): run_atlas exited; CPU time 24976.748829
14:27:37 (2159841): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN