Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:21:39 (1465837): wrapper (7.7.26015): starting
17:21:39 (1465837): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 17:21:39] Arguments: --nthreads 3
[2026-01-14 17:21:39] Threads: 3
[2026-01-14 17:21:39] Checking for CVMFS
[2026-01-14 17:21:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 17:21:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 17:21:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 17:21:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 17:21:39] 2.9.2.0 1053361 1004 81200 155138 1 56 22759828 36864001 0 130560 0 1084300 99.992 39936 25485 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 17:21:39] CVMFS is ok
[2026-01-14 17:21:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 17:21:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 17:21:39] Further information can be found at the LHC@home message board.
[2026-01-14 17:21:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 17:21:39] Checking for apptainer binary...
[2026-01-14 17:21:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 17:21:39] Running /usr/bin/apptainer --version
[2026-01-14 17:21:39] apptainer version 1.4.1-1.1
[2026-01-14 17:21:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 17:21:39] magicA246a
[2026-01-14 17:21:39] apptainer works
[2026-01-14 17:21:39] Set ATHENA_PROC_NUMBER=3
[2026-01-14 17:21:39] Set ATHENA_CORE_NUMBER=3
[2026-01-14 17:21:39] Starting ATLAS job with PandaID=6969458581
[2026-01-14 17:21:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 18:15:54]  *** The last 200 lines of the pilot log: ***
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,959 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,960 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,960 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,960 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,960 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,960 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 18:15:54] 2026-01-14 17:15:11,960 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,960 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 18:15:54] 2026-01-14 17:15:11,960 | INFO     | job 6969458581 has completed (purged errors)
[2026-01-14 18:15:54] 2026-01-14 17:15:11,960 | INFO     | overall cleanup function is called
[2026-01-14 18:15:54] 2026-01-14 17:15:12,966 | INFO     | --- collectZombieJob: --- 10, [1476005]
[2026-01-14 18:15:54] 2026-01-14 17:15:12,967 | INFO     | zombie collector waiting for pid 1476005
[2026-01-14 18:15:54] 2026-01-14 17:15:12,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 18:15:54] 2026-01-14 17:15:12,967 | INFO     | collected zombie processes
[2026-01-14 18:15:54] 2026-01-14 17:15:12,967 | INFO     | will attempt to kill all subprocesses of pid=1476005
[2026-01-14 18:15:54] 2026-01-14 17:15:13,024 | INFO     | process IDs to be killed: [1476005] (in reverse order)
[2026-01-14 18:15:54] 2026-01-14 17:15:13,053 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 18:15:54] 2026-01-14 17:15:13,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 18:15:54] 2026-01-14 17:15:13,055 | INFO     | did not find any defunct processes belonging to 1476005
[2026-01-14 18:15:54] 2026-01-14 17:15:13,056 | INFO     | did not find any defunct processes belonging to 1476005
[2026-01-14 18:15:54] 2026-01-14 17:15:13,056 | INFO     | ready for new job
[2026-01-14 18:15:54] 2026-01-14 17:15:13,056 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 18:15:54] 2026-01-14 17:15:13,057 | INFO     | ***************************************
[2026-01-14 18:15:54] 2026-01-14 17:15:13,057 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 18:15:54] 2026-01-14 17:15:13,057 | INFO     | ***************************************
[2026-01-14 18:15:54] 2026-01-14 17:15:13,057 | INFO     | 
[2026-01-14 18:15:54] 2026-01-14 17:15:13,057 | INFO     | architecture information:
[2026-01-14 18:15:54] 2026-01-14 17:15:13,058 | INFO     | executing command: cat /etc/os-release
[2026-01-14 18:15:54] 2026-01-14 17:15:13,067 | INFO     | cat /etc/os-release:
[2026-01-14 18:15:54] NAME="CentOS Linux"
[2026-01-14 18:15:54] VERSION="7 (Core)"
[2026-01-14 18:15:54] ID="centos"
[2026-01-14 18:15:54] ID_LIKE="rhel fedora"
[2026-01-14 18:15:54] VERSION_ID="7"
[2026-01-14 18:15:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 18:15:54] ANSI_COLOR="0;31"
[2026-01-14 18:15:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 18:15:54] HOME_URL="https://www.centos.org/"
[2026-01-14 18:15:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 18:15:54] 
[2026-01-14 18:15:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 18:15:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 18:15:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 18:15:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 18:15:54] 
[2026-01-14 18:15:54] 2026-01-14 17:15:13,067 | INFO     | ***************************************
[2026-01-14 18:15:54] 2026-01-14 17:15:13,570 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 18:15:54] 2026-01-14 17:15:13,582 | INFO     | sufficient remaining disk space (281620250624 B)
[2026-01-14 18:15:54] 2026-01-14 17:15:13,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 18:15:54] 2026-01-14 17:15:13,582 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 18:15:54] 2026-01-14 17:15:13,582 | INFO     | update_server=False
[2026-01-14 18:15:54] 2026-01-14 17:15:13,582 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 18:15:54] 2026-01-14 17:15:13,582 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 18:15:54] 2026-01-14 17:15:13,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 18:15:54] 2026-01-14 17:15:13,742 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-14 18:15:54] 2026-01-14 17:15:13,742 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 18:15:54] 2026-01-14 17:15:13,742 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 18:15:54] 2026-01-14 17:15:13,743 | INFO     | will abort loop
[2026-01-14 18:15:54] 2026-01-14 17:15:13,802 | INFO     | all data control threads have been joined
[2026-01-14 18:15:54] 2026-01-14 17:15:14,558 | INFO     | all payload control threads have been joined
[2026-01-14 18:15:54] 2026-01-14 17:15:14,588 | INFO     | [job] retrieve thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:14,588 | INFO     | [job] queue monitor thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:14,744 | INFO     | [job] job monitor thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:14,806 | INFO     | [data] control thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:14,906 | INFO     | all job control threads have been joined
[2026-01-14 18:15:54] 2026-01-14 17:15:15,087 | INFO     | [payload] failed_post thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,270 | INFO     | [data] copytool_in thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 18:15:54] 2026-01-14 17:15:15,563 | INFO     | [payload] control thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,588 | INFO     | [data] copytool_out thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,600 | INFO     | [payload] validate_post thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,735 | INFO     | [job] validate thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,742 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,799 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,856 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,912 | INFO     | [job] control thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:15,927 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:19,455 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 18:15:54] 2026-01-14 17:15:43,211 | INFO     | PID=1469562 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 18:15:54] 2026-01-14 17:15:43,211 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 18:15:54] 2026-01-14 17:15:43,211 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 18:15:54] 2026-01-14 17:15:43,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 18:15:54] 2026-01-14 17:15:48,620 | INFO     | [monitor] cgroup control has ended
[2026-01-14 18:15:54] 2026-01-14 17:15:49,686 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140501739079488)>', '<ExcThread(monitor, started 140501248366336)>']
[2026-01-14 18:15:54] 2026-01-14 17:15:50,246 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 18:15:54] 2026-01-14 17:15:50,247 | INFO     | [monitor] control thread has ended
[2026-01-14 18:15:54] 2026-01-14 17:15:54,711 | INFO     | all workflow threads have been joined
[2026-01-14 18:15:54] 2026-01-14 17:15:54,712 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 18:15:54] 2026-01-14 17:15:54,712 | INFO     | traces error code: 0
[2026-01-14 18:15:54] 2026-01-14 17:15:54,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 18:15:54] 2026-01-14 17:15:54,766 [wrapper] ==== pilot stdout END ====
[2026-01-14 18:15:54] 2026-01-14 17:15:54,769 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 18:15:54] 2026-01-14 17:15:54,771 [wrapper] pilotpid: 1469562
[2026-01-14 18:15:54] 2026-01-14 17:15:54,774 [wrapper] Pilot exit status: 0
[2026-01-14 18:15:54] 2026-01-14 17:15:54,781 [wrapper] pandaids: 6969458581
[2026-01-14 18:15:54] 2026-01-14 17:15:54,800 [wrapper] cleanup supervisor_pilot 1485890 1469563
[2026-01-14 18:15:54] 2026-01-14 17:15:54,802 [wrapper] Test setup, not cleaning
[2026-01-14 18:15:54] 2026-01-14 17:15:54,805 [wrapper] apfmon messages muted
[2026-01-14 18:15:54] 2026-01-14 17:15:54,807 [wrapper] ==== wrapper stdout END ====
[2026-01-14 18:15:54] 2026-01-14 17:15:54,809 [wrapper] ==== wrapper stderr END ====
[2026-01-14 18:15:54]  *** Error codes and diagnostics ***
[2026-01-14 18:15:54]     "exeErrorCode": 0,
[2026-01-14 18:15:54]     "exeErrorDiag": "",
[2026-01-14 18:15:54]     "pilotErrorCode": 0,
[2026-01-14 18:15:54]     "pilotErrorDiag": "",
[2026-01-14 18:15:54]  *** Listing of results directory ***
[2026-01-14 18:15:54] total 733652
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc    579449 Jan 14 14:11 pilot3.tar.gz
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc      5112 Jan 14 14:11 queuedata.json
[2026-01-14 18:15:54] -rwx------ 1 boinc boinc     36322 Jan 14 14:11 runpilot2-wrapper.sh
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc       100 Jan 14 17:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 18:15:54] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 17:21 run_atlas
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc       105 Jan 14 17:21 job.xml
[2026-01-14 18:15:54] -rw-r--r-- 2 boinc boinc 596918253 Jan 14 17:21 EVNT.32794306._000901.pool.root.1
[2026-01-14 18:15:54] -rw-r--r-- 2 boinc boinc    592399 Jan 14 17:21 input.tar.gz
[2026-01-14 18:15:54] -rw-r--r-- 2 boinc boinc     15847 Jan 14 17:21 start_atlas.sh
[2026-01-14 18:15:54] drwxrwx--x 2 boinc boinc      4096 Jan 14 17:21 shared
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc         0 Jan 14 17:21 boinc_setup_complete
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc      6447 Jan 14 17:21 init_data.xml
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc         0 Jan 14 17:21 boinc_lockfile
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc      2506 Jan 14 17:21 pandaJob.out
[2026-01-14 18:15:54] -rw------- 1 boinc boinc    997956 Jan 14 17:21 agis_schedconf.cvmfs.json
[2026-01-14 18:15:54] -rw------- 1 boinc boinc   1516246 Jan 14 17:21 agis_ddmendpoints.agis.ALL.json
[2026-01-14 18:15:54] drwx------ 5 boinc boinc      4096 Jan 14 17:21 pilot3
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc       529 Jan 14 18:14 boinc_task_state.xml
[2026-01-14 18:15:54] -rw------- 1 boinc boinc 149013141 Jan 14 18:14 HITS.48215263._022485.pool.root.1
[2026-01-14 18:15:54] -rw------- 1 boinc boinc      1010 Jan 14 18:14 memory_monitor_summary.json
[2026-01-14 18:15:54] -rw------- 1 boinc boinc        95 Jan 14 18:15 pilot_heartbeat.json
[2026-01-14 18:15:54] -rw------- 1 boinc boinc    216483 Jan 14 18:15 log.48215263._022485.job.log.tgz.1
[2026-01-14 18:15:54] -rw------- 1 boinc boinc      7743 Jan 14 18:15 heartbeat.json
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc      8192 Jan 14 18:15 boinc_mmap_file
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc        26 Jan 14 18:15 wrapper_checkpoint.txt
[2026-01-14 18:15:54] -rw------- 1 boinc boinc      4938 Jan 14 18:15 pilotlog.txt
[2026-01-14 18:15:54] -rw------- 1 boinc boinc    489923 Jan 14 18:15 log.48215263._022485.job.log.1
[2026-01-14 18:15:54] -rw------- 1 boinc boinc       357 Jan 14 18:15 output.list
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc       620 Jan 14 18:15 runtime_log
[2026-01-14 18:15:54] -rw------- 1 boinc boinc    727040 Jan 14 18:15 result.tar.gz
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc      8917 Jan 14 18:15 runtime_log.err
[2026-01-14 18:15:54] -rw------- 1 boinc boinc       660 Jan 14 18:15 Dw1KDm4pF08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8CrKDm0tZhUn.diag
[2026-01-14 18:15:54] -rw-r--r-- 1 boinc boinc     12782 Jan 14 18:15 stderr.txt
[2026-01-14 18:15:54] HITS file was successfully produced:
[2026-01-14 18:15:54] -rw------- 1 boinc boinc 149013141 Jan 14 18:14 shared/HITS.pool.root.1
[2026-01-14 18:15:54]  *** Contents of shared directory: ***
[2026-01-14 18:15:54] total 729768
[2026-01-14 18:15:54] -rw-r--r-- 2 boinc boinc 596918253 Jan 14 17:21 ATLAS.root_0
[2026-01-14 18:15:54] -rw-r--r-- 2 boinc boinc    592399 Jan 14 17:21 input.tar.gz
[2026-01-14 18:15:54] -rw-r--r-- 2 boinc boinc     15847 Jan 14 17:21 start_atlas.sh
[2026-01-14 18:15:54] -rw------- 1 boinc boinc 149013141 Jan 14 18:14 HITS.pool.root.1
[2026-01-14 18:15:54] -rw------- 1 boinc boinc    727040 Jan 14 18:15 result.tar.gz
18:15:56 (1465837): run_atlas exited; CPU time 9001.206573
18:15:56 (1465837): called boinc_finish(0)

</stderr_txt>
]]>

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