Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:55:03 (2966794): wrapper (7.7.26015): starting
17:55:03 (2966794): wrapper: running run_atlas (--nthreads 4)
[2026-01-14 17:55:03] Arguments: --nthreads 4
[2026-01-14 17:55:03] Threads: 4
[2026-01-14 17:55:03] Checking for CVMFS
[2026-01-14 17:55:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 17:55:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 17:55:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 17:55:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 17:55:03] 2.9.2.0 2429254 1237 90160 155138 1 57 21651284 36864001 0 130560 0 1406064 99.993 49596 14359 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 17:55:03] CVMFS is ok
[2026-01-14 17:55:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 17:55:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 17:55:03] Further information can be found at the LHC@home message board.
[2026-01-14 17:55:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 17:55:03] Checking for apptainer binary...
[2026-01-14 17:55:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 17:55:03] Running /usr/bin/apptainer --version
[2026-01-14 17:55:03] apptainer version 1.4.1-1.1
[2026-01-14 17:55:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 17:55:04] thA309
[2026-01-14 17:55:04] apptainer works
[2026-01-14 17:55:04] Set ATHENA_PROC_NUMBER=4
[2026-01-14 17:55:04] Set ATHENA_CORE_NUMBER=4
[2026-01-14 17:55:04] Starting ATLAS job with PandaID=6969458447
[2026-01-14 17:55:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 18:46:21]  *** The last 200 lines of the pilot log: ***
[2026-01-14 18:46:21] 2026-01-14 17:45:24,033 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 18:46:21] 2026-01-14 17:45:24,033 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 18:46:21] 2026-01-14 17:45:24,033 | INFO     | will abort loop
[2026-01-14 18:46:21] 2026-01-14 17:45:24,182 | INFO     | all data control threads have been joined
[2026-01-14 18:46:21] 2026-01-14 17:45:24,368 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 18:46:21] 2026-01-14 17:45:24,742 | INFO     | [job] queue monitor thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:24,742 | INFO     | [job] retrieve thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:24,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 18:46:21] 2026-01-14 17:45:24,914 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:25,007 | INFO     | [payload] control thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:25,039 | INFO     | [job] job monitor thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:25,087 | INFO     | [payload] failed_post thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:25,185 | INFO     | [data] control thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:25,307 | INFO     | all job control threads have been joined
[2026-01-14 18:46:21] 2026-01-14 17:45:25,331 | INFO     | [data] copytool_in thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:25,968 | INFO     | [payload] validate_post thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:26,122 | INFO     | [job] validate thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:26,190 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:26,243 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:26,312 | INFO     | [job] control thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:26,843 | INFO     | [data] copytool_out thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:28,375 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:34,029 | INFO     | job.realtimelogging is not enabled
[2026-01-14 18:46:21] 2026-01-14 17:45:35,034 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 18:46:21] 2026-01-14 17:45:53,574 | INFO     | PID=2970599 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 18:46:21] 2026-01-14 17:45:53,574 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 18:46:21] 2026-01-14 17:45:53,574 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 18:46:21] 2026-01-14 17:45:53,574 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 18:46:21] 2026-01-14 17:46:15,690 | INFO     | [monitor] cgroup control has ended
[2026-01-14 18:46:21] 2026-01-14 17:46:16,702 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140256969561920)>', '<ExcThread(monitor, started 140256015791872)>']
[2026-01-14 18:46:21] 2026-01-14 17:46:17,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 18:46:21] 2026-01-14 17:46:17,703 | INFO     | [monitor] control thread has ended
[2026-01-14 18:46:21] 2026-01-14 17:46:21,727 | INFO     | all workflow threads have been joined
[2026-01-14 18:46:21] 2026-01-14 17:46:21,728 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 18:46:21] 2026-01-14 17:46:21,728 | INFO     | traces error code: 0
[2026-01-14 18:46:21] 2026-01-14 17:46:21,728 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 18:46:21] 2026-01-14 17:46:21,812 [wrapper] ==== pilot stdout END ====
[2026-01-14 18:46:21] 2026-01-14 17:46:21,816 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 18:46:21] 2026-01-14 17:46:21,820 [wrapper] pilotpid: 2970599
[2026-01-14 18:46:21] 2026-01-14 17:46:21,824 [wrapper] Pilot exit status: 0
[2026-01-14 18:46:21] 2026-01-14 17:46:21,835 [wrapper] pandaids: 6969458447
[2026-01-14 18:46:21] 2026-01-14 17:46:21,860 [wrapper] cleanup supervisor_pilot 2986997 2970600
[2026-01-14 18:46:21] 2026-01-14 17:46:21,864 [wrapper] Test setup, not cleaning
[2026-01-14 18:46:21] 2026-01-14 17:46:21,869 [wrapper] apfmon messages muted
[2026-01-14 18:46:21] 2026-01-14 17:46:21,873 [wrapper] ==== wrapper stdout END ====
[2026-01-14 18:46:21] 2026-01-14 17:46:21,877 [wrapper] ==== wrapper stderr END ====
[2026-01-14 18:46:21]  *** Error codes and diagnostics ***
[2026-01-14 18:46:21]     "exeErrorCode": 0,
[2026-01-14 18:46:21]     "exeErrorDiag": "",
[2026-01-14 18:46:21]     "pilotErrorCode": 0,
[2026-01-14 18:46:21]     "pilotErrorDiag": "",
[2026-01-14 18:46:21]  *** Listing of results directory ***
[2026-01-14 18:46:21] total 734788
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc    579449 Jan 14 14:11 pilot3.tar.gz
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc      5112 Jan 14 14:11 queuedata.json
[2026-01-14 18:46:21] -rwx------ 1 boinc boinc     36322 Jan 14 14:11 runpilot2-wrapper.sh
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc       100 Jan 14 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 18:46:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 17:55 run_atlas
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc       105 Jan 14 17:55 job.xml
[2026-01-14 18:46:21] -rw-r--r-- 2 boinc boinc 594384279 Jan 14 17:55 EVNT.32794306._000895.pool.root.1
[2026-01-14 18:46:21] -rw-r--r-- 2 boinc boinc    592398 Jan 14 17:55 input.tar.gz
[2026-01-14 18:46:21] -rw-r--r-- 2 boinc boinc     15847 Jan 14 17:55 start_atlas.sh
[2026-01-14 18:46:21] drwxrwx--x 2 boinc boinc      4096 Jan 14 17:55 shared
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc         0 Jan 14 17:55 boinc_setup_complete
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc      6377 Jan 14 17:55 init_data.xml
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc         0 Jan 14 17:55 boinc_lockfile
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc      2507 Jan 14 17:55 pandaJob.out
[2026-01-14 18:46:21] -rw------- 1 boinc boinc    997956 Jan 14 17:55 agis_schedconf.cvmfs.json
[2026-01-14 18:46:21] -rw------- 1 boinc boinc   1516246 Jan 14 17:55 agis_ddmendpoints.agis.ALL.json
[2026-01-14 18:46:21] drwx------ 5 boinc boinc      4096 Jan 14 17:55 pilot3
[2026-01-14 18:46:21] -rw------- 1 boinc boinc 152709499 Jan 14 18:44 HITS.48215263._022351.pool.root.1
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc       530 Jan 14 18:45 boinc_task_state.xml
[2026-01-14 18:46:21] -rw------- 1 boinc boinc      1021 Jan 14 18:45 memory_monitor_summary.json
[2026-01-14 18:46:21] -rw------- 1 boinc boinc    250532 Jan 14 18:45 log.48215263._022351.job.log.tgz.1
[2026-01-14 18:46:21] -rw------- 1 boinc boinc      7762 Jan 14 18:45 heartbeat.json
[2026-01-14 18:46:21] -rw------- 1 boinc boinc        95 Jan 14 18:45 pilot_heartbeat.json
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc      8192 Jan 14 18:46 boinc_mmap_file
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc        27 Jan 14 18:46 wrapper_checkpoint.txt
[2026-01-14 18:46:21] -rw------- 1 boinc boinc      5010 Jan 14 18:46 pilotlog.txt
[2026-01-14 18:46:21] -rw------- 1 boinc boinc    462336 Jan 14 18:46 log.48215263._022351.job.log.1
[2026-01-14 18:46:21] -rw------- 1 boinc boinc       357 Jan 14 18:46 output.list
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc       620 Jan 14 18:46 runtime_log
[2026-01-14 18:46:21] -rw------- 1 boinc boinc    727040 Jan 14 18:46 result.tar.gz
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc      8897 Jan 14 18:46 runtime_log.err
[2026-01-14 18:46:21] -rw------- 1 boinc boinc       657 Jan 14 18:46 eLsKDmtpF08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJ0kKDmnhqSSm.diag
[2026-01-14 18:46:21] -rw-r--r-- 1 boinc boinc      7164 Jan 14 18:46 stderr.txt
[2026-01-14 18:46:21] HITS file was successfully produced:
[2026-01-14 18:46:21] -rw------- 1 boinc boinc 152709499 Jan 14 18:44 shared/HITS.pool.root.1
[2026-01-14 18:46:21]  *** Contents of shared directory: ***
[2026-01-14 18:46:21] total 730904
[2026-01-14 18:46:21] -rw-r--r-- 2 boinc boinc 594384279 Jan 14 17:55 ATLAS.root_0
[2026-01-14 18:46:21] -rw-r--r-- 2 boinc boinc    592398 Jan 14 17:55 input.tar.gz
[2026-01-14 18:46:21] -rw-r--r-- 2 boinc boinc     15847 Jan 14 17:55 start_atlas.sh
[2026-01-14 18:46:21] -rw------- 1 boinc boinc 152709499 Jan 14 18:44 HITS.pool.root.1
[2026-01-14 18:46:21] -rw------- 1 boinc boinc    727040 Jan 14 18:46 result.tar.gz
18:46:23 (2966794): run_atlas exited; CPU time 10940.795261
18:46:23 (2966794): called boinc_finish(0)

</stderr_txt>
]]>

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