Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:21:28 (4059461): wrapper (7.7.26015): starting
10:21:28 (4059461): wrapper: running run_atlas (--nthreads 9)
[2026-01-14 10:21:28] Arguments: --nthreads 9
[2026-01-14 10:21:28] Threads: 9
[2026-01-14 10:21:28] Checking for CVMFS
[2026-01-14 10:21:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 10:21:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 10:21:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 10:21:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 10:21:29] 2.13.3.0 12161 100783 343180 155136 0 95 29907797 40960000 14799 16776704 0 270446422 99.546 321466452 37790 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-14 10:21:29] CVMFS is ok
[2026-01-14 10:21:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 10:21:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 10:21:29] Further information can be found at the LHC@home message board.
[2026-01-14 10:21:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 10:21:29] Checking for apptainer binary...
[2026-01-14 10:21:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 10:21:29] Running /usr/bin/apptainer --version
[2026-01-14 10:21:29] apptainer version 1.4.5-2.el9
[2026-01-14 10:21:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 10:21:29] c6-5-7-1.aglt2.org
[2026-01-14 10:21:29] apptainer works
[2026-01-14 10:21:29] Set ATHENA_PROC_NUMBER=9
[2026-01-14 10:21:29] Set ATHENA_CORE_NUMBER=9
[2026-01-14 10:21:29] Starting ATLAS job with PandaID=6969457955
[2026-01-14 10:21:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 11:55:59]  *** The last 200 lines of the pilot log: ***
[2026-01-14 11:55:59] 2026-01-14 16:54:44,025 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 11:55:59] 2026-01-14 16:54:45,306 | INFO     | monitor loop #372: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:54:45,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:54:45,784 | INFO     | time since job start (5582s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:54:47,832 | INFO     | time since job start (5584s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:54:47,834 | INFO     | monitor loop #373: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:54:47,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:54:49,839 | INFO     | time since job start (5586s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:54:50,367 | INFO     | monitor loop #374: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:54:50,367 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:54:51,846 | INFO     | time since job start (5588s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:54:52,873 | INFO     | monitor loop #375: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:54:52,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:54:53,853 | INFO     | time since job start (5590s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:54:55,397 | INFO     | monitor loop #376: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:54:55,397 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:54:55,860 | INFO     | time since job start (5592s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:54:57,867 | INFO     | time since job start (5594s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:54:57,911 | INFO     | monitor loop #377: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:54:57,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:54:59,874 | INFO     | time since job start (5596s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:55:00,417 | INFO     | monitor loop #378: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:55:00,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:55:01,881 | INFO     | time since job start (5598s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:55:02,949 | INFO     | monitor loop #379: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:55:02,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:55:03,898 | INFO     | time since job start (5600s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:55:05,486 | INFO     | monitor loop #380: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:55:05,486 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:55:07,364 | INFO     | PID=4066728 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 11:55:59] 2026-01-14 16:55:07,364 | INFO     | .. there are 17 such processes running
[2026-01-14 11:55:59] 2026-01-14 16:55:08,019 | INFO     | monitor loop #381: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:55:08,019 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:55:08,365 | INFO     | time since job start (5605s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:55:10,372 | INFO     | time since job start (5607s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:55:10,524 | INFO     | monitor loop #382: job 0:6969457955 is in state 'finished'
[2026-01-14 11:55:59] 2026-01-14 16:55:10,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:55:59] 2026-01-14 16:55:12,379 | INFO     | time since job start (5609s) is within the limit (349056.0s)
[2026-01-14 11:55:59] 2026-01-14 16:55:12,575 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-14 11:55:59] 2026-01-14 16:55:12,608 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3010.557392857143
[2026-01-14 11:55:59] 2026-01-14 16:55:12,643 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6969457955/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 11:55:59] 2026-01-14 16:55:12,644 | INFO     | extracted standard info from prmon json
[2026-01-14 11:55:59] 2026-01-14 16:55:12,644 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 11:55:59] 2026-01-14 16:55:12,644 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 11:55:59] 2026-01-14 16:55:12,648 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 11:55:59] 2026-01-14 16:55:12,648 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 11:55:59] 2026-01-14 16:55:12,650 | INFO     | fitting pss+swap vs Time
[2026-01-14 11:55:59] 2026-01-14 16:55:12,651 | INFO     | sum of square deviations: 183755442.70238084
[2026-01-14 11:55:59] 2026-01-14 16:55:12,651 | INFO     | sum of deviations: -8985113291.702381
[2026-01-14 11:55:59] 2026-01-14 16:55:12,651 | INFO     | mean x: 1768406968.7738094
[2026-01-14 11:55:59] 2026-01-14 16:55:12,651 | INFO     | mean y: 2725195.226190476
[2026-01-14 11:55:59] 2026-01-14 16:55:12,651 | INFO     | intersect: 86472746037.02411
[2026-01-14 11:55:59] 2026-01-14 16:55:12,652 | INFO     | chi2: 0.04732205246201723
[2026-01-14 11:55:59] 2026-01-14 16:55:12,652 | INFO     | current memory leak: -48.90 B/s (using 84 data points, chi2=0.05)
[2026-01-14 11:55:59] 2026-01-14 16:55:12,652 | INFO     | could have reported an average CPU frequency of 3042 MHz (7 samples)
[2026-01-14 11:55:59] 2026-01-14 16:55:12,652 | INFO     | ..............................
[2026-01-14 11:55:59] 2026-01-14 16:55:12,653 | INFO     | . Timing measurements:
[2026-01-14 11:55:59] 2026-01-14 16:55:12,653 | INFO     | . get job = 0 s
[2026-01-14 11:55:59] 2026-01-14 16:55:12,653 | INFO     | . initial setup = 2 s
[2026-01-14 11:55:59] 2026-01-14 16:55:12,653 | INFO     | . payload setup = 7 s
[2026-01-14 11:55:59] 2026-01-14 16:55:12,653 | INFO     | . stage-in = 0 s
[2026-01-14 11:55:59] 2026-01-14 16:55:12,653 | INFO     | . payload execution = 5543 s
[2026-01-14 11:55:59] 2026-01-14 16:55:12,653 | INFO     | . stage-out = 4 s
[2026-01-14 11:55:59] 2026-01-14 16:55:12,653 | INFO     | . log creation = 0 s
[2026-01-14 11:55:59] 2026-01-14 16:55:12,653 | INFO     | ..............................
[2026-01-14 11:55:59] 2026-01-14 16:55:12,980 | INFO     | 
[2026-01-14 11:55:59] 2026-01-14 16:55:12,980 | INFO     | job summary report
[2026-01-14 11:55:59] 2026-01-14 16:55:12,980 | INFO     | --------------------------------------------------
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | PanDA job id: 6969457955
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | task id: 48215263
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | errors: (none)
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | pilot state: finished 
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | transexitcode: 0
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | exeerrorcode: 0
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | exeerrordiag: 
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | exitcode: 0
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | exitmsg: OK
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | cpuconsumptiontime: 24061 s
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | nevents: 400
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | neventsw: 0
[2026-01-14 11:55:59] 2026-01-14 16:55:12,981 | INFO     | pid: 4079327
[2026-01-14 11:55:59] 2026-01-14 16:55:12,982 | INFO     | pgrp: 4079327
[2026-01-14 11:55:59] 2026-01-14 16:55:12,982 | INFO     | corecount: 9
[2026-01-14 11:55:59] 2026-01-14 16:55:12,982 | INFO     | event service: False
[2026-01-14 11:55:59] 2026-01-14 16:55:12,982 | INFO     | sizes: {0: 2283949, 6: 2284211, 11: 2284239, 5555: 2310934, 5556: 2310933, 5561: 2319987, 5562: 2320171, 5593: 2320365}
[2026-01-14 11:55:59] 2026-01-14 16:55:12,982 | INFO     | --------------------------------------------------
[2026-01-14 11:55:59] 2026-01-14 16:55:12,982 | INFO     | 
[2026-01-14 11:55:59] 2026-01-14 16:55:12,982 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-14 11:55:59] 2026-01-14 16:55:13,191 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,192 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | job 6969457955 has completed (purged errors)
[2026-01-14 11:55:59] 2026-01-14 16:55:13,193 | INFO     | overall cleanup function is called
[2026-01-14 11:55:59] 2026-01-14 16:55:14,218 | INFO     | --- collectZombieJob: --- 10, [4079327]
[2026-01-14 11:55:59] 2026-01-14 16:55:14,218 | INFO     | zombie collector waiting for pid 4079327
[2026-01-14 11:55:59] 2026-01-14 16:55:14,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 11:55:59] 2026-01-14 16:55:14,218 | INFO     | collected zombie processes
[2026-01-14 11:55:59] 2026-01-14 16:55:14,219 | INFO     | will attempt to kill all subprocesses of pid=4079327
[2026-01-14 11:55:59] 2026-01-14 16:55:14,915 | INFO     | process IDs to be killed: [4079327] (in reverse order)
[2026-01-14 11:55:59] 2026-01-14 16:55:15,145 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 11:55:59] 2026-01-14 16:55:15,145 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 11:55:59] 2026-01-14 16:55:15,169 | INFO     | did not find any defunct processes belonging to 4079327
[2026-01-14 11:55:59] 2026-01-14 16:55:15,194 | INFO     | did not find any defunct processes belonging to 4079327
[2026-01-14 11:55:59] 2026-01-14 16:55:15,194 | INFO     | ready for new job
[2026-01-14 11:55:59] 2026-01-14 16:55:15,194 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 11:55:59] 2026-01-14 16:55:15,195 | INFO     | ***************************************
[2026-01-14 11:55:59] 2026-01-14 16:55:15,196 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 11:55:59] 2026-01-14 16:55:15,196 | INFO     | ***************************************
[2026-01-14 11:55:59] 2026-01-14 16:55:15,196 | INFO     | 
[2026-01-14 11:55:59] 2026-01-14 16:55:15,203 | INFO     | architecture information:
[2026-01-14 11:55:59] 2026-01-14 16:55:15,207 | INFO     | executing command: cat /etc/os-release
[2026-01-14 11:55:59] 2026-01-14 16:55:15,369 | INFO     | cat /etc/os-release:
[2026-01-14 11:55:59] NAME="CentOS Linux"
[2026-01-14 11:55:59] VERSION="7 (Core)"
[2026-01-14 11:55:59] ID="centos"
[2026-01-14 11:55:59] ID_LIKE="rhel fedora"
[2026-01-14 11:55:59] VERSION_ID="7"
[2026-01-14 11:55:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 11:55:59] ANSI_COLOR="0;31"
[2026-01-14 11:55:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 11:55:59] HOME_URL="https://www.centos.org/"
[2026-01-14 11:55:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 11:55:59] 
[2026-01-14 11:55:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 11:55:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 11:55:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 11:55:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 11:55:59] 
[2026-01-14 11:55:59] 2026-01-14 16:55:15,370 | INFO     | ***************************************
[2026-01-14 11:55:59] 2026-01-14 16:55:15,873 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-14 11:55:59] 2026-01-14 16:55:16,020 | INFO     | sufficient remaining disk space (71569506304 B)
[2026-01-14 11:55:59] 2026-01-14 16:55:16,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 11:55:59] 2026-01-14 16:55:16,021 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 11:55:59] 2026-01-14 16:55:16,021 | INFO     | update_server=False
[2026-01-14 11:55:59] 2026-01-14 16:55:16,021 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 11:55:59] 2026-01-14 16:55:16,517 | INFO     | all job control threads have been joined
[2026-01-14 11:55:59] 2026-01-14 16:55:16,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 11:55:59] 2026-01-14 16:55:16,574 | INFO     | aborting loop
[2026-01-14 11:55:59] 2026-01-14 16:55:16,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 11:55:59] 2026-01-14 16:55:16,933 | INFO     | all data control threads have been joined
[2026-01-14 11:55:59] 2026-01-14 16:55:17,027 | INFO     | [job] retrieve thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:17,104 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:17,205 | INFO     | [payload] failed_post thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:17,210 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:17,236 | INFO     | all payload control threads have been joined
[2026-01-14 11:55:59] 2026-01-14 16:55:17,510 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:17,523 | INFO     | [job] control thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:17,580 | INFO     | [job] job monitor thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:17,605 | INFO     | [payload] validate_post thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:17,939 | INFO     | [data] control thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:17,975 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 11:55:59] 2026-01-14 16:55:18,025 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:18,105 | INFO     | [data] copytool_in thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:18,120 | INFO     | [job] validate thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:18,242 | INFO     | [payload] control thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:18,693 | INFO     | [data] copytool_out thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:18,981 | INFO     | [job] queue monitor thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:19,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 11:55:59] 2026-01-14 16:55:23,455 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 11:55:59] 2026-01-14 16:55:46,174 | INFO     | PID=4066728 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 11:55:59] 2026-01-14 16:55:46,174 | INFO     | .. there are 17 such processes running
[2026-01-14 11:55:59] 2026-01-14 16:55:46,175 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 11:55:59] 2026-01-14 16:55:46,175 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 11:55:59] 2026-01-14 16:55:46,175 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 11:55:59] 2026-01-14 16:55:52,936 | INFO     | [monitor] cgroup control has ended
[2026-01-14 11:55:59] 2026-01-14 16:55:53,054 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140231401027392)>', '<ExcThread(monitor, started 140231051294464)>']
[2026-01-14 11:55:59] 2026-01-14 16:55:53,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 11:55:59] 2026-01-14 16:55:53,234 | INFO     | [monitor] control thread has ended
[2026-01-14 11:55:59] 2026-01-14 16:55:58,079 | INFO     | all workflow threads have been joined
[2026-01-14 11:55:59] 2026-01-14 16:55:58,079 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 11:55:59] 2026-01-14 16:55:58,079 | INFO     | traces error code: 0
[2026-01-14 11:55:59] 2026-01-14 16:55:58,080 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 11:55:59] 2026-01-14 16:55:58,483 [wrapper] ==== pilot stdout END ====
[2026-01-14 11:55:59] 2026-01-14 16:55:58,529 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 11:55:59] 2026-01-14 16:55:58,559 [wrapper] pilotpid: 4066728
[2026-01-14 11:55:59] 2026-01-14 16:55:58,599 [wrapper] Pilot exit status: 0
[2026-01-14 11:55:59] 2026-01-14 16:55:58,828 [wrapper] pandaids: 6969457955
[2026-01-14 11:55:59] 2026-01-14 16:55:59,313 [wrapper] cleanup supervisor_pilot  175308 4066729
[2026-01-14 11:55:59] 2026-01-14 16:55:59,331 [wrapper] Test setup, not cleaning
[2026-01-14 11:55:59] 2026-01-14 16:55:59,345 [wrapper] apfmon messages muted
[2026-01-14 11:55:59] 2026-01-14 16:55:59,348 [wrapper] ==== wrapper stdout END ====
[2026-01-14 11:55:59] 2026-01-14 16:55:59,350 [wrapper] ==== wrapper stderr END ====
[2026-01-14 11:55:59]  *** Error codes and diagnostics ***
[2026-01-14 11:55:59]     "exeErrorCode": 0,
[2026-01-14 11:55:59]     "exeErrorDiag": "",
[2026-01-14 11:55:59]     "pilotErrorCode": 0,
[2026-01-14 11:55:59]     "pilotErrorDiag": "",
[2026-01-14 11:55:59]  *** Listing of results directory ***
[2026-01-14 11:55:59] total 729416
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 08:11 pilot3.tar.gz
[2026-01-14 11:55:59] -rwx------. 1 boincer umatlas     36322 Jan 14 08:11 runpilot2-wrapper.sh
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 08:11 queuedata.json
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas       100 Jan 14 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 11:55:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 14 10:21 run_atlas
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas       105 Jan 14 10:21 job.xml
[2026-01-14 11:55:59] -rw-r--r--. 2 boincer umatlas 594740257 Jan 14 10:21 EVNT.32794306._000883.pool.root.1
[2026-01-14 11:55:59] -rw-r--r--. 2 boincer umatlas    592394 Jan 14 10:21 input.tar.gz
[2026-01-14 11:55:59] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 10:21 start_atlas.sh
[2026-01-14 11:55:59] drwxrwx--x. 2 boincer umatlas      4096 Jan 14 10:21 shared
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas         0 Jan 14 10:21 boinc_lockfile
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas      2507 Jan 14 10:21 pandaJob.out
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas        57 Jan 14 10:21 setup.sh.local
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas    997956 Jan 14 10:21 agis_schedconf.cvmfs.json
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas   1516246 Jan 14 10:21 agis_ddmendpoints.agis.ALL.json
[2026-01-14 11:55:59] drwx------. 5 boincer umatlas      4096 Jan 14 10:21 pilot3
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas      6841 Jan 14 11:49 init_data.xml
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas 145996256 Jan 14 11:53 HITS.48215263._022043.pool.root.1
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas       531 Jan 14 11:53 boinc_task_state.xml
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas      1038 Jan 14 11:54 memory_monitor_summary.json
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas    349715 Jan 14 11:54 log.48215263._022043.job.log.tgz.1
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas      7817 Jan 14 11:55 heartbeat.json
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas        95 Jan 14 11:55 pilot_heartbeat.json
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas        27 Jan 14 11:55 wrapper_checkpoint.txt
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas      8192 Jan 14 11:55 boinc_mmap_file
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas      4824 Jan 14 11:55 pilotlog.txt
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas    787475 Jan 14 11:55 log.48215263._022043.job.log.1
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas       357 Jan 14 11:55 output.list
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas       620 Jan 14 11:55 runtime_log
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas   1157120 Jan 14 11:55 result.tar.gz
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas      9342 Jan 14 11:55 runtime_log.err
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas       652 Jan 14 11:55 pXYLDmhpF08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCzkKDmBXg5dm.diag
[2026-01-14 11:55:59] -rw-r--r--. 1 boincer umatlas      2144 Jan 14 11:55 stderr.txt
[2026-01-14 11:55:59] HITS file was successfully produced:
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas 145996256 Jan 14 11:53 shared/HITS.pool.root.1
[2026-01-14 11:55:59]  *** Contents of shared directory: ***
[2026-01-14 11:55:59] total 725116
[2026-01-14 11:55:59] -rw-r--r--. 2 boincer umatlas 594740257 Jan 14 10:21 ATLAS.root_0
[2026-01-14 11:55:59] -rw-r--r--. 2 boincer umatlas    592394 Jan 14 10:21 input.tar.gz
[2026-01-14 11:55:59] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 10:21 start_atlas.sh
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas 145996256 Jan 14 11:53 HITS.pool.root.1
[2026-01-14 11:55:59] -rw-------. 1 boincer umatlas   1157120 Jan 14 11:55 result.tar.gz
11:56:01 (4059461): run_atlas exited; CPU time 24189.082301
11:56:01 (4059461): called boinc_finish(0)

</stderr_txt>
]]>

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