Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:08:22 (3936847): wrapper (7.7.26015): starting
10:08:22 (3936847): wrapper: running run_atlas (--nthreads 8)
[2026-01-14 10:08:22] Arguments: --nthreads 8
[2026-01-14 10:08:22] Threads: 8
[2026-01-14 10:08:22] Checking for CVMFS
[2026-01-14 10:08:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 10:08:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 10:08:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 10:08:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 10:08:23] 2.13.3.0 10223 100748 229320 155135 3 28 24186940 40960001 22881 16776704 0 1065333556 99.693 868880772 51155 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-14 10:08:23] CVMFS is ok
[2026-01-14 10:08:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 10:08:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 10:08:23] Further information can be found at the LHC@home message board.
[2026-01-14 10:08:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 10:08:23] Checking for apptainer binary...
[2026-01-14 10:08:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 10:08:23] Running /usr/bin/apptainer --version
[2026-01-14 10:08:23] apptainer version 1.4.5-2.el9
[2026-01-14 10:08:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 10:08:23] c8-7-6.aglt2.org
[2026-01-14 10:08:23] apptainer works
[2026-01-14 10:08:23] Set ATHENA_PROC_NUMBER=8
[2026-01-14 10:08:23] Set ATHENA_CORE_NUMBER=8
[2026-01-14 10:08:23] Starting ATLAS job with PandaID=6969307293
[2026-01-14 10:08:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 10:49:57]  *** The last 200 lines of the pilot log: ***
[2026-01-14 10:49:57] 2026-01-14 15:48:59,009 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/7/PanDA_Pilot-6969307293/log.48215263._012980.job.log.tgz.1 /tmp/boinchome/slots/7/log.48215263._012980.job
[2026-01-14 10:49:57] 2026-01-14 15:48:59,024 | INFO     | adding to output.list: log.48215263._012980.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/a0/log.48215263._012980.job.log.tg
[2026-01-14 10:49:57] 2026-01-14 15:48:59,024 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 10:49:57] 2026-01-14 15:48:59,024 | INFO     | summary of transferred files:
[2026-01-14 10:49:57] 2026-01-14 15:48:59,024 | INFO     |  -- lfn=log.48215263._012980.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 10:49:57] 2026-01-14 15:48:59,024 | INFO     | stage-out finished correctly
[2026-01-14 10:49:57] 2026-01-14 15:48:59,737 | INFO     | time since job start (2413s) is within the limit (349056.0s)
[2026-01-14 10:49:57] 2026-01-14 15:49:00,900 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 10:49:57] 2026-01-14 15:49:01,744 | INFO     | time since job start (2415s) is within the limit (349056.0s)
[2026-01-14 10:49:57] 2026-01-14 15:49:03,416 | INFO     | job 6969307293 has state=finished
[2026-01-14 10:49:57] 2026-01-14 15:49:03,416 | INFO     | preparing for final server update for job 6969307293 in state='finished'
[2026-01-14 10:49:57] 2026-01-14 15:49:03,417 | INFO     | this job has now completed (state=finished)
[2026-01-14 10:49:57] 2026-01-14 15:49:03,417 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 10:49:57] 2026-01-14 15:49:03,417 | INFO     | log transfer has been attempted: DONE
[2026-01-14 10:49:57] 2026-01-14 15:49:03,417 | INFO     | job 6969307293 has finished - writing final server update
[2026-01-14 10:49:57] 2026-01-14 15:49:03,417 | INFO     | total number of processed events: 400 (read)
[2026-01-14 10:49:57] 2026-01-14 15:49:03,418 | INFO     | executing command: lscpu
[2026-01-14 10:49:57] 2026-01-14 15:49:03,475 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 10:49:57] 2026-01-14 15:49:03,755 | INFO     | time since job start (2417s) is within the limit (349056.0s)
[2026-01-14 10:49:57] 2026-01-14 15:49:05,433 | WARNING  | process 3972957 can no longer be monitored (due to stat problems) - aborting
[2026-01-14 10:49:57] 2026-01-14 15:49:05,433 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6969307293/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 10:49:57] 2026-01-14 15:49:05,434 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6969307293/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 10:49:57] 2026-01-14 15:49:05,434 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-14 10:49:57] 2026-01-14 15:49:05,434 | WARNING  | maxPSS not found in memory monitor output
[2026-01-14 10:49:57] 2026-01-14 15:49:05,435 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2975106 B
[2026-01-14 10:49:57] 2026-01-14 15:49:05,435 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15353 B
[2026-01-14 10:49:57] 2026-01-14 15:49:05,435 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2026-01-14 10:49:57] 2026-01-14 15:49:05,760 | INFO     | time since job start (2419s) is within the limit (349056.0s)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,037 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-14 10:49:57] 2026-01-14 15:49:07,047 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3752.5300312500003
[2026-01-14 10:49:57] 2026-01-14 15:49:07,053 | INFO     | sufficient remaining disk space (157303177216 B)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,054 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,056 | INFO     | size of work directory /tmp/boinchome/slots/7/PanDA_Pilot-6969307293: 3258537 B (within 4404019200 B limit)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,056 | INFO     | pfn file=/tmp/boinchome/slots/7/PanDA_Pilot-6969307293/HITS.48215263._012980.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,056 | INFO     | total size of present files: 0 B (workdir size: 3258537 B)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,056 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/7/PanDA_Pilot-6969307293/HITS.48215263._012980.pool.root.1 since it does not exist
[2026-01-14 10:49:57] 2026-01-14 15:49:07,063 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6969307293/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,064 | INFO     | extracted standard info from prmon json
[2026-01-14 10:49:57] 2026-01-14 15:49:07,064 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 10:49:57] 2026-01-14 15:49:07,064 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 10:49:57] 2026-01-14 15:49:07,064 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 10:49:57] 2026-01-14 15:49:07,064 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 10:49:57] 2026-01-14 15:49:07,067 | INFO     | fitting pss+swap vs Time
[2026-01-14 10:49:57] 2026-01-14 15:49:07,067 | INFO     | sum of square deviations: 10150888.0
[2026-01-14 10:49:57] 2026-01-14 15:49:07,068 | INFO     | sum of deviations: -125685101.5
[2026-01-14 10:49:57] 2026-01-14 15:49:07,068 | INFO     | mean x: 1768404622.5
[2026-01-14 10:49:57] 2026-01-14 15:49:07,068 | INFO     | mean y: 2543201.15625
[2026-01-14 10:49:57] 2026-01-14 15:49:07,068 | INFO     | intersect: 21898372853.890244
[2026-01-14 10:49:57] 2026-01-14 15:49:07,068 | INFO     | chi2: 0.0015937551129550016
[2026-01-14 10:49:57] 2026-01-14 15:49:07,068 | INFO     | current memory leak: -12.38 B/s (using 32 data points, chi2=0.00)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,068 | INFO     | could have reported an average CPU frequency of 3790 MHz (5 samples)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,068 | INFO     | ..............................
[2026-01-14 10:49:57] 2026-01-14 15:49:07,069 | INFO     | . Timing measurements:
[2026-01-14 10:49:57] 2026-01-14 15:49:07,069 | INFO     | . get job = 0 s
[2026-01-14 10:49:57] 2026-01-14 15:49:07,069 | INFO     | . initial setup = 2 s
[2026-01-14 10:49:57] 2026-01-14 15:49:07,069 | INFO     | . payload setup = 14 s
[2026-01-14 10:49:57] 2026-01-14 15:49:07,069 | INFO     | . stage-in = 0 s
[2026-01-14 10:49:57] 2026-01-14 15:49:07,069 | INFO     | . payload execution = 2374 s
[2026-01-14 10:49:57] 2026-01-14 15:49:07,069 | INFO     | . stage-out = 0 s
[2026-01-14 10:49:57] 2026-01-14 15:49:07,069 | INFO     | . log creation = 0 s
[2026-01-14 10:49:57] 2026-01-14 15:49:07,069 | INFO     | ..............................
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | 
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | job summary report
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | --------------------------------------------------
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | PanDA job id: 6969307293
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | task id: 48215263
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | errors: (none)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | pilot state: finished 
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | transexitcode: 0
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | exeerrorcode: 0
[2026-01-14 10:49:57] 2026-01-14 15:49:07,125 | INFO     | exeerrordiag: 
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | exitcode: 0
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | exitmsg: OK
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | cpuconsumptiontime: 14515 s
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | nevents: 400
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | neventsw: 0
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | pid: 3972957
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | pgrp: 3972957
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | corecount: 8
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | event service: False
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | sizes: {0: 2283121, 1: 2283977, 10: 2284239, 12: 2284267, 2393: 2318498, 2395: 2318498, 2401: 2318880}
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | --------------------------------------------------
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | 
[2026-01-14 10:49:57] 2026-01-14 15:49:07,126 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,146 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | job 6969307293 has completed (purged errors)
[2026-01-14 10:49:57] 2026-01-14 15:49:07,147 | INFO     | overall cleanup function is called
[2026-01-14 10:49:57] 2026-01-14 15:49:07,541 | INFO     | number of running child processes to parent process 3972957: 1
[2026-01-14 10:49:57] 2026-01-14 15:49:07,542 | INFO     | maximum number of monitored processes: 6
[2026-01-14 10:49:57] 2026-01-14 15:49:07,542 | INFO     | aborting job monitoring since job object (job id=6969307293) has expired
[2026-01-14 10:49:57] 2026-01-14 15:49:08,155 | INFO     | --- collectZombieJob: --- 10, [3972957]
[2026-01-14 10:49:57] 2026-01-14 15:49:08,155 | INFO     | zombie collector waiting for pid 3972957
[2026-01-14 10:49:57] 2026-01-14 15:49:08,155 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 10:49:57] 2026-01-14 15:49:08,155 | INFO     | collected zombie processes
[2026-01-14 10:49:57] 2026-01-14 15:49:08,155 | INFO     | will attempt to kill all subprocesses of pid=3972957
[2026-01-14 10:49:57] 2026-01-14 15:49:08,563 | INFO     | process IDs to be killed: [3972957] (in reverse order)
[2026-01-14 10:49:57] 2026-01-14 15:49:08,702 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 10:49:57] 2026-01-14 15:49:08,702 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 10:49:57] 2026-01-14 15:49:08,723 | INFO     | did not find any defunct processes belonging to 3972957
[2026-01-14 10:49:57] 2026-01-14 15:49:08,742 | INFO     | did not find any defunct processes belonging to 3972957
[2026-01-14 10:49:57] 2026-01-14 15:49:08,743 | INFO     | ready for new job
[2026-01-14 10:49:57] 2026-01-14 15:49:08,743 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 10:49:57] 2026-01-14 15:49:08,744 | INFO     | ***************************************
[2026-01-14 10:49:57] 2026-01-14 15:49:08,744 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 10:49:57] 2026-01-14 15:49:08,744 | INFO     | ***************************************
[2026-01-14 10:49:57] 2026-01-14 15:49:08,745 | INFO     | 
[2026-01-14 10:49:57] 2026-01-14 15:49:08,749 | INFO     | architecture information:
[2026-01-14 10:49:57] 2026-01-14 15:49:08,749 | INFO     | executing command: cat /etc/os-release
[2026-01-14 10:49:57] 2026-01-14 15:49:08,767 | INFO     | cat /etc/os-release:
[2026-01-14 10:49:57] NAME="CentOS Linux"
[2026-01-14 10:49:57] VERSION="7 (Core)"
[2026-01-14 10:49:57] ID="centos"
[2026-01-14 10:49:57] ID_LIKE="rhel fedora"
[2026-01-14 10:49:57] VERSION_ID="7"
[2026-01-14 10:49:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 10:49:57] ANSI_COLOR="0;31"
[2026-01-14 10:49:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 10:49:57] HOME_URL="https://www.centos.org/"
[2026-01-14 10:49:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 10:49:57] 
[2026-01-14 10:49:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 10:49:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 10:49:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 10:49:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 10:49:57] 
[2026-01-14 10:49:57] 2026-01-14 15:49:08,767 | INFO     | ***************************************
[2026-01-14 10:49:57] 2026-01-14 15:49:09,269 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2026-01-14 10:49:57] 2026-01-14 15:49:09,285 | INFO     | sufficient remaining disk space (157306322944 B)
[2026-01-14 10:49:57] 2026-01-14 15:49:09,285 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 10:49:57] 2026-01-14 15:49:09,286 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 10:49:57] 2026-01-14 15:49:09,286 | INFO     | update_server=False
[2026-01-14 10:49:57] 2026-01-14 15:49:09,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 10:49:57] 2026-01-14 15:49:09,286 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 10:49:57] 2026-01-14 15:49:09,286 | INFO     | aborting loop
[2026-01-14 10:49:57] 2026-01-14 15:49:09,458 | INFO     | all job control threads have been joined
[2026-01-14 10:49:57] 2026-01-14 15:49:09,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 10:49:57] 2026-01-14 15:49:10,046 | INFO     | all data control threads have been joined
[2026-01-14 10:49:57] 2026-01-14 15:49:10,291 | INFO     | [job] retrieve thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:10,291 | INFO     | [job] job monitor thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:10,368 | INFO     | [payload] failed_post thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:10,463 | INFO     | [job] control thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:10,588 | INFO     | [data] copytool_in thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:10,634 | INFO     | [job] validate thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:10,767 | INFO     | all payload control threads have been joined
[2026-01-14 10:49:57] 2026-01-14 15:49:10,839 | INFO     | [payload] validate_post thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:11,051 | INFO     | [data] control thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:11,140 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:11,204 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:11,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 10:49:57] 2026-01-14 15:49:11,575 | INFO     | [data] copytool_out thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:11,584 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:11,772 | INFO     | [payload] control thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:12,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 10:49:57] 2026-01-14 15:49:13,139 | INFO     | [job] queue monitor thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:15,468 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:20,338 | INFO     | job.realtimelogging is not enabled
[2026-01-14 10:49:57] 2026-01-14 15:49:21,343 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 10:49:57] 2026-01-14 15:49:39,385 | INFO     | PID=3946166 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 10:49:57] 2026-01-14 15:49:39,385 | INFO     | .. there are 23 such processes running
[2026-01-14 10:49:57] 2026-01-14 15:49:39,386 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 10:49:57] 2026-01-14 15:49:39,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 10:49:57] 2026-01-14 15:49:39,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 10:49:57] 2026-01-14 15:49:49,785 | INFO     | [monitor] cgroup control has ended
[2026-01-14 10:49:57] 2026-01-14 15:49:51,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613816792896)>', '<ExcThread(monitor, started 140613336954624)>']
[2026-01-14 10:49:57] 2026-01-14 15:49:52,452 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 10:49:57] 2026-01-14 15:49:52,452 | INFO     | [monitor] control thread has ended
[2026-01-14 10:49:57] 2026-01-14 15:49:56,824 | INFO     | all workflow threads have been joined
[2026-01-14 10:49:57] 2026-01-14 15:49:56,824 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 10:49:57] 2026-01-14 15:49:56,824 | INFO     | traces error code: 0
[2026-01-14 10:49:57] 2026-01-14 15:49:56,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 10:49:57] 2026-01-14 15:49:56,906 [wrapper] ==== pilot stdout END ====
[2026-01-14 10:49:57] 2026-01-14 15:49:56,909 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 10:49:57] 2026-01-14 15:49:56,911 [wrapper] pilotpid: 3946166
[2026-01-14 10:49:57] 2026-01-14 15:49:56,914 [wrapper] Pilot exit status: 0
[2026-01-14 10:49:57] 2026-01-14 15:49:56,926 [wrapper] pandaids: 6969307293
[2026-01-14 10:49:57] 2026-01-14 15:49:57,025 [wrapper] cleanup supervisor_pilot   41265 3946167
[2026-01-14 10:49:57] 2026-01-14 15:49:57,028 [wrapper] Test setup, not cleaning
[2026-01-14 10:49:57] 2026-01-14 15:49:57,031 [wrapper] apfmon messages muted
[2026-01-14 10:49:57] 2026-01-14 15:49:57,033 [wrapper] ==== wrapper stdout END ====
[2026-01-14 10:49:57] 2026-01-14 15:49:57,036 [wrapper] ==== wrapper stderr END ====
[2026-01-14 10:49:57]  *** Error codes and diagnostics ***
[2026-01-14 10:49:57]     "exeErrorCode": 0,
[2026-01-14 10:49:57]     "exeErrorDiag": "",
[2026-01-14 10:49:57]     "pilotErrorCode": 0,
[2026-01-14 10:49:57]     "pilotErrorDiag": "",
[2026-01-14 10:49:57]  *** Listing of results directory ***
[2026-01-14 10:49:57] total 741856
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas    579449 Jan 13 22:13 pilot3.tar.gz
[2026-01-14 10:49:57] -rwx------. 1 boincer umatlas     36322 Jan 13 22:16 runpilot2-wrapper.sh
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 22:21 queuedata.json
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas       100 Jan 14 10:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 10:49:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 14 10:08 run_atlas
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas       105 Jan 14 10:08 job.xml
[2026-01-14 10:49:57] -rw-r--r--. 2 boincer umatlas 602468735 Jan 14 10:08 EVNT.32794306._000520.pool.root.1
[2026-01-14 10:49:57] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 10:08 start_atlas.sh
[2026-01-14 10:49:57] drwxrwx--x. 2 boincer umatlas      4096 Jan 14 10:08 shared
[2026-01-14 10:49:57] -rw-r--r--. 2 boincer umatlas    592399 Jan 14 10:08 input.tar.gz
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas         0 Jan 14 10:08 boinc_lockfile
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas      2507 Jan 14 10:08 pandaJob.out
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas        57 Jan 14 10:08 setup.sh.local
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas    997566 Jan 14 10:08 agis_schedconf.cvmfs.json
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas   1516246 Jan 14 10:08 agis_ddmendpoints.agis.ALL.json
[2026-01-14 10:49:57] drwx------. 5 boincer umatlas      4096 Jan 14 10:08 pilot3
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas       530 Jan 14 10:48 boinc_task_state.xml
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas 151945839 Jan 14 10:48 HITS.48215263._012980.pool.root.1
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas      1034 Jan 14 10:48 memory_monitor_summary.json
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas    280653 Jan 14 10:48 log.48215263._012980.job.log.tgz.1
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas      7765 Jan 14 10:49 heartbeat.json
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas      7171 Jan 14 10:49 init_data.xml
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas        95 Jan 14 10:49 pilot_heartbeat.json
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas        27 Jan 14 10:49 wrapper_checkpoint.txt
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas      4897 Jan 14 10:49 pilotlog.txt
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas      8192 Jan 14 10:49 boinc_mmap_file
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas    378588 Jan 14 10:49 log.48215263._012980.job.log.1
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas       357 Jan 14 10:49 output.list
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas       620 Jan 14 10:49 runtime_log
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas    675840 Jan 14 10:49 result.tar.gz
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas      9332 Jan 14 10:49 runtime_log.err
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas       649 Jan 14 10:49 CDLKDmXY6z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm78pKDmR6NJwm.diag
[2026-01-14 10:49:57] -rw-r--r--. 1 boincer umatlas     22677 Jan 14 10:49 stderr.txt
[2026-01-14 10:49:57] HITS file was successfully produced:
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas 151945839 Jan 14 10:48 shared/HITS.pool.root.1
[2026-01-14 10:49:57]  *** Contents of shared directory: ***
[2026-01-14 10:49:57] total 738004
[2026-01-14 10:49:57] -rw-r--r--. 2 boincer umatlas 602468735 Jan 14 10:08 ATLAS.root_0
[2026-01-14 10:49:57] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 10:08 start_atlas.sh
[2026-01-14 10:49:57] -rw-r--r--. 2 boincer umatlas    592399 Jan 14 10:08 input.tar.gz
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas 151945839 Jan 14 10:48 HITS.pool.root.1
[2026-01-14 10:49:57] -rw-------. 1 boincer umatlas    675840 Jan 14 10:49 result.tar.gz
10:49:58 (3936847): run_atlas exited; CPU time 14579.675236
10:49:58 (3936847): called boinc_finish(0)

</stderr_txt>
]]>

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