Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:14:00 (1453296): wrapper (7.7.26015): starting
10:14:00 (1453296): wrapper: running run_atlas (--nthreads 9)
[2026-01-14 10:14:00] Arguments: --nthreads 9
[2026-01-14 10:14:00] Threads: 9
[2026-01-14 10:14:00] Checking for CVMFS
[2026-01-14 10:14:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 10:14:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 10:14:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 10:14:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 10:14:02] 2.13.3.0 11160 100776 395112 155135 1 305 31630087 32935937 21301 16776704 0 289106693 99.516 438311482 40432 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-14 10:14:02] CVMFS is ok
[2026-01-14 10:14:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 10:14:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 10:14:02] Further information can be found at the LHC@home message board.
[2026-01-14 10:14:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 10:14:02] Checking for apptainer binary...
[2026-01-14 10:14:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 10:14:02] Running /usr/bin/apptainer --version
[2026-01-14 10:14:02] apptainer version 1.4.5-2.el9
[2026-01-14 10:14:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 10:14:24] c6-2-29-2.aglt2.org
[2026-01-14 10:14:24] apptainer works
[2026-01-14 10:14:24] Set ATHENA_PROC_NUMBER=9
[2026-01-14 10:14:24] Set ATHENA_CORE_NUMBER=9
[2026-01-14 10:14:24] Starting ATLAS job with PandaID=6969448080
[2026-01-14 10:14:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 12:49:01]  *** The last 200 lines of the pilot log: ***
[2026-01-14 12:49:01] 2026-01-14 17:48:20,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 12:49:01] 2026-01-14 17:48:20,681 | INFO     | time since job start (9182s) is within the limit (349056.0s)
[2026-01-14 12:49:01] 2026-01-14 17:48:22,647 | INFO     | monitor loop #567: job 0:6969448080 is in state 'finished'
[2026-01-14 12:49:01] 2026-01-14 17:48:22,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 12:49:01] 2026-01-14 17:48:22,688 | INFO     | time since job start (9184s) is within the limit (349056.0s)
[2026-01-14 12:49:01] 2026-01-14 17:48:24,698 | INFO     | time since job start (9186s) is within the limit (349056.0s)
[2026-01-14 12:49:01] 2026-01-14 17:48:25,159 | INFO     | monitor loop #568: job 0:6969448080 is in state 'finished'
[2026-01-14 12:49:01] 2026-01-14 17:48:25,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,246 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-14 12:49:01] 2026-01-14 17:48:26,324 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3056.92025
[2026-01-14 12:49:01] 2026-01-14 17:48:26,403 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6969448080/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,404 | INFO     | extracted standard info from prmon json
[2026-01-14 12:49:01] 2026-01-14 17:48:26,404 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 12:49:01] 2026-01-14 17:48:26,404 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 12:49:01] 2026-01-14 17:48:26,421 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 12:49:01] 2026-01-14 17:48:26,421 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 12:49:01] 2026-01-14 17:48:26,424 | INFO     | fitting pss+swap vs Time
[2026-01-14 12:49:01] 2026-01-14 17:48:26,424 | INFO     | sum of square deviations: 1025752638.0268474
[2026-01-14 12:49:01] 2026-01-14 17:48:26,430 | INFO     | sum of deviations: -16093958669.624157
[2026-01-14 12:49:01] 2026-01-14 17:48:26,430 | INFO     | mean x: 1768408350.409396
[2026-01-14 12:49:01] 2026-01-14 17:48:26,430 | INFO     | mean y: 2631342.7315436243
[2026-01-14 12:49:01] 2026-01-14 17:48:26,431 | INFO     | intersect: 27748785578.56607
[2026-01-14 12:49:01] 2026-01-14 17:48:26,431 | INFO     | chi2: 2.73883117103013
[2026-01-14 12:49:01] 2026-01-14 17:48:26,431 | INFO     | sum of square deviations: 925927966.9999982
[2026-01-14 12:49:01] 2026-01-14 17:48:26,432 | INFO     | sum of deviations: -5505005983.333331
[2026-01-14 12:49:01] 2026-01-14 17:48:26,432 | INFO     | mean x: 1768408197.9166667
[2026-01-14 12:49:01] 2026-01-14 17:48:26,432 | INFO     | mean y: 2647113.472222222
[2026-01-14 12:49:01] 2026-01-14 17:48:26,432 | INFO     | intersect: 10516529464.438063
[2026-01-14 12:49:01] 2026-01-14 17:48:26,432 | INFO     | chi2: 2.0582150566095727
[2026-01-14 12:49:01] 2026-01-14 17:48:26,432 | INFO     | current chi2=2.0582150566095727 (change=24.850604944902962 %)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,433 | INFO     | right removable region: 143
[2026-01-14 12:49:01] 2026-01-14 17:48:26,464 | INFO     | sum of square deviations: 925899602.1597219
[2026-01-14 12:49:01] 2026-01-14 17:48:26,467 | INFO     | sum of deviations: -45162585034.16667
[2026-01-14 12:49:01] 2026-01-14 17:48:26,467 | INFO     | mean x: 1768408502.9236112
[2026-01-14 12:49:01] 2026-01-14 17:48:26,467 | INFO     | mean y: 2675212.1666666665
[2026-01-14 12:49:01] 2026-01-14 17:48:26,467 | INFO     | intersect: 86260298827.23087
[2026-01-14 12:49:01] 2026-01-14 17:48:26,467 | INFO     | chi2: 0.8860977794169916
[2026-01-14 12:49:01] 2026-01-14 17:48:26,468 | INFO     | current chi2=0.8860977794169916 (change=67.64686378665274 %)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,468 | INFO     | sum of square deviations: 832744366.2302191
[2026-01-14 12:49:01] 2026-01-14 17:48:26,468 | INFO     | sum of deviations: -43866606545.971214
[2026-01-14 12:49:01] 2026-01-14 17:48:26,468 | INFO     | mean x: 1768408655.438849
[2026-01-14 12:49:01] 2026-01-14 17:48:26,468 | INFO     | mean y: 2672940.179856115
[2026-01-14 12:49:01] 2026-01-14 17:48:26,468 | INFO     | intersect: 93157415075.271
[2026-01-14 12:49:01] 2026-01-14 17:48:26,469 | INFO     | chi2: 0.8471851031074417
[2026-01-14 12:49:01] 2026-01-14 17:48:26,469 | INFO     | current chi2=0.8471851031074417 (change=4.391465277697974 %)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,469 | INFO     | left removable region: 20
[2026-01-14 12:49:01] 2026-01-14 17:48:26,469 | INFO     | sum of square deviations: 576984904.7317066
[2026-01-14 12:49:01] 2026-01-14 17:48:26,469 | INFO     | sum of deviations: -20403386484.73171
[2026-01-14 12:49:01] 2026-01-14 17:48:26,469 | INFO     | mean x: 1768408777.487805
[2026-01-14 12:49:01] 2026-01-14 17:48:26,469 | INFO     | mean y: 2667108.1788617885
[2026-01-14 12:49:01] 2026-01-14 17:48:26,470 | INFO     | intersect: 62537280152.95726
[2026-01-14 12:49:01] 2026-01-14 17:48:26,470 | INFO     | chi2: 0.08868487859776296
[2026-01-14 12:49:01] 2026-01-14 17:48:26,470 | INFO     | current memory leak: -35.36 B/s (using 123 data points, chi2=0.09)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,470 | INFO     | could have reported an average CPU frequency of 3114 MHz (8 samples)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,470 | INFO     | ..............................
[2026-01-14 12:49:01] 2026-01-14 17:48:26,471 | INFO     | . Timing measurements:
[2026-01-14 12:49:01] 2026-01-14 17:48:26,476 | INFO     | . get job = 0 s
[2026-01-14 12:49:01] 2026-01-14 17:48:26,477 | INFO     | . initial setup = 4 s
[2026-01-14 12:49:01] 2026-01-14 17:48:26,477 | INFO     | . payload setup = 31 s
[2026-01-14 12:49:01] 2026-01-14 17:48:26,477 | INFO     | . stage-in = 0 s
[2026-01-14 12:49:01] 2026-01-14 17:48:26,477 | INFO     | . payload execution = 9061 s
[2026-01-14 12:49:01] 2026-01-14 17:48:26,477 | INFO     | . stage-out = 2 s
[2026-01-14 12:49:01] 2026-01-14 17:48:26,477 | INFO     | . log creation = 0 s
[2026-01-14 12:49:01] 2026-01-14 17:48:26,477 | INFO     | ..............................
[2026-01-14 12:49:01] 2026-01-14 17:48:26,674 | INFO     | 
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | job summary report
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | --------------------------------------------------
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | PanDA job id: 6969448080
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | task id: 48215263
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | errors: (none)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | pilot state: finished 
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | transexitcode: 0
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | exeerrorcode: 0
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | exeerrordiag: 
[2026-01-14 12:49:01] 2026-01-14 17:48:26,675 | INFO     | exitcode: 0
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | exitmsg: OK
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | cpuconsumptiontime: 23498 s
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | nevents: 400
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | neventsw: 0
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | pid: 1466052
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | pgrp: 1466052
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | corecount: 9
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | event service: False
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | sizes: {0: 2283778, 1: 2283977, 2: 2283977, 13: 2284005, 23: 2284061, 25: 2284351, 34: 2284507, 9097: 2312678, 9100: 2321732, 9125: 2321870}
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | --------------------------------------------------
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | 
[2026-01-14 12:49:01] 2026-01-14 17:48:26,676 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-14 12:49:01] 2026-01-14 17:48:26,705 | INFO     | time since job start (9188s) is within the limit (349056.0s)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,716 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,716 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,716 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,716 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,717 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 12:49:01] 2026-01-14 17:48:26,718 | INFO     | job 6969448080 has completed (purged errors)
[2026-01-14 12:49:01] 2026-01-14 17:48:26,718 | INFO     | overall cleanup function is called
[2026-01-14 12:49:01] 2026-01-14 17:48:27,727 | INFO     | --- collectZombieJob: --- 10, [1466052]
[2026-01-14 12:49:01] 2026-01-14 17:48:27,732 | INFO     | zombie collector waiting for pid 1466052
[2026-01-14 12:49:01] 2026-01-14 17:48:27,732 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 12:49:01] 2026-01-14 17:48:27,732 | INFO     | collected zombie processes
[2026-01-14 12:49:01] 2026-01-14 17:48:27,732 | INFO     | will attempt to kill all subprocesses of pid=1466052
[2026-01-14 12:49:01] 2026-01-14 17:48:29,068 | INFO     | process IDs to be killed: [1466052] (in reverse order)
[2026-01-14 12:49:01] 2026-01-14 17:48:29,376 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 12:49:01] 2026-01-14 17:48:29,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 12:49:01] 2026-01-14 17:48:29,418 | INFO     | did not find any defunct processes belonging to 1466052
[2026-01-14 12:49:01] 2026-01-14 17:48:29,435 | INFO     | did not find any defunct processes belonging to 1466052
[2026-01-14 12:49:01] 2026-01-14 17:48:29,435 | INFO     | ready for new job
[2026-01-14 12:49:01] 2026-01-14 17:48:29,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 12:49:01] 2026-01-14 17:48:29,437 | INFO     | ***************************************
[2026-01-14 12:49:01] 2026-01-14 17:48:29,438 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 12:49:01] 2026-01-14 17:48:29,438 | INFO     | ***************************************
[2026-01-14 12:49:01] 2026-01-14 17:48:29,438 | INFO     | 
[2026-01-14 12:49:01] 2026-01-14 17:48:29,441 | INFO     | architecture information:
[2026-01-14 12:49:01] 2026-01-14 17:48:29,441 | INFO     | executing command: cat /etc/os-release
[2026-01-14 12:49:01] 2026-01-14 17:48:29,565 | INFO     | cat /etc/os-release:
[2026-01-14 12:49:01] NAME="CentOS Linux"
[2026-01-14 12:49:01] VERSION="7 (Core)"
[2026-01-14 12:49:01] ID="centos"
[2026-01-14 12:49:01] ID_LIKE="rhel fedora"
[2026-01-14 12:49:01] VERSION_ID="7"
[2026-01-14 12:49:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 12:49:01] ANSI_COLOR="0;31"
[2026-01-14 12:49:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 12:49:01] HOME_URL="https://www.centos.org/"
[2026-01-14 12:49:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 12:49:01] 
[2026-01-14 12:49:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 12:49:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 12:49:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 12:49:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 12:49:01] 
[2026-01-14 12:49:01] 2026-01-14 17:48:29,566 | INFO     | ***************************************
[2026-01-14 12:49:01] 2026-01-14 17:48:30,068 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-14 12:49:01] 2026-01-14 17:48:30,210 | INFO     | sufficient remaining disk space (73864839168 B)
[2026-01-14 12:49:01] 2026-01-14 17:48:30,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 12:49:01] 2026-01-14 17:48:30,211 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 12:49:01] 2026-01-14 17:48:30,211 | INFO     | update_server=False
[2026-01-14 12:49:01] 2026-01-14 17:48:30,211 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 12:49:01] 2026-01-14 17:48:30,367 | INFO     | all data control threads have been joined
[2026-01-14 12:49:01] 2026-01-14 17:48:30,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 12:49:01] 2026-01-14 17:48:30,512 | INFO     | all payload control threads have been joined
[2026-01-14 12:49:01] 2026-01-14 17:48:31,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 12:49:01] 2026-01-14 17:48:31,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 12:49:01] 2026-01-14 17:48:31,184 | INFO     | aborting loop
[2026-01-14 12:49:01] 2026-01-14 17:48:31,217 | INFO     | [job] retrieve thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:31,381 | INFO     | [data] control thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:31,518 | INFO     | [payload] control thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:31,537 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:31,709 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 12:49:01] 2026-01-14 17:48:31,916 | INFO     | all job control threads have been joined
[2026-01-14 12:49:01] 2026-01-14 17:48:32,123 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,190 | INFO     | [job] job monitor thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,354 | INFO     | [job] validate thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,355 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,504 | INFO     | [data] copytool_out thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,562 | INFO     | [payload] failed_post thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,667 | INFO     | [payload] validate_post thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,702 | INFO     | [data] copytool_in thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,705 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,715 | INFO     | [job] queue monitor thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:32,922 | INFO     | [job] control thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:34,822 | INFO     | [monitor] cgroup control has ended
[2026-01-14 12:49:01] 2026-01-14 17:48:35,187 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 12:49:01] 2026-01-14 17:48:36,430 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140211834435392)>', '<ExcThread(monitor, started 140211178678016)>']
[2026-01-14 12:49:01] 2026-01-14 17:48:41,456 | INFO     | all workflow threads have been joined
[2026-01-14 12:49:01] 2026-01-14 17:48:41,456 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 12:49:01] 2026-01-14 17:48:41,456 | INFO     | traces error code: 0
[2026-01-14 12:49:01] 2026-01-14 17:48:41,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 12:49:01] 2026-01-14 17:49:00,347 | INFO     | PID=1458024 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 12:49:01] 2026-01-14 17:49:00,348 | INFO     | .. there are 23 such processes running
[2026-01-14 12:49:01] 2026-01-14 17:49:00,352 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 12:49:01] 2026-01-14 17:49:00,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 12:49:01] 2026-01-14 17:49:00,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 12:49:01] 2026-01-14 17:49:00,352 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 12:49:01] 2026-01-14 17:49:00,352 | INFO     | [monitor] control thread has ended
[2026-01-14 12:49:01] 2026-01-14 17:49:00,617 [wrapper] ==== pilot stdout END ====
[2026-01-14 12:49:01] 2026-01-14 17:49:00,641 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 12:49:01] 2026-01-14 17:49:00,648 [wrapper] pilotpid: 1458024
[2026-01-14 12:49:01] 2026-01-14 17:49:00,650 [wrapper] Pilot exit status: 0
[2026-01-14 12:49:01] 2026-01-14 17:49:00,667 [wrapper] pandaids: 6969448080
[2026-01-14 12:49:01] 2026-01-14 17:49:00,748 [wrapper] cleanup supervisor_pilot 2124646 1458025
[2026-01-14 12:49:01] 2026-01-14 17:49:00,764 [wrapper] Test setup, not cleaning
[2026-01-14 12:49:01] 2026-01-14 17:49:00,768 [wrapper] apfmon messages muted
[2026-01-14 12:49:01] 2026-01-14 17:49:00,770 [wrapper] ==== wrapper stdout END ====
[2026-01-14 12:49:01] 2026-01-14 17:49:00,773 [wrapper] ==== wrapper stderr END ====
[2026-01-14 12:49:01]  *** Error codes and diagnostics ***
[2026-01-14 12:49:01]     "exeErrorCode": 0,
[2026-01-14 12:49:01]     "exeErrorDiag": "",
[2026-01-14 12:49:01]     "pilotErrorCode": 0,
[2026-01-14 12:49:01]     "pilotErrorDiag": "",
[2026-01-14 12:49:01]  *** Listing of results directory ***
[2026-01-14 12:49:01] total 726644
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 06:27 pilot3.tar.gz
[2026-01-14 12:49:01] -rwx------. 1 boincer umatlas     36322 Jan 14 06:28 runpilot2-wrapper.sh
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 06:29 queuedata.json
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas       100 Jan 14 10:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 12:49:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 14 10:13 run_atlas
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas       105 Jan 14 10:13 job.xml
[2026-01-14 12:49:01] -rw-r--r--. 2 boincer umatlas 593527643 Jan 14 10:14 EVNT.32794306._000862.pool.root.1
[2026-01-14 12:49:01] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 10:14 start_atlas.sh
[2026-01-14 12:49:01] drwxrwx--x. 2 boincer umatlas      4096 Jan 14 10:14 shared
[2026-01-14 12:49:01] -rw-r--r--. 2 boincer umatlas    592399 Jan 14 10:14 input.tar.gz
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas         0 Jan 14 10:14 boinc_lockfile
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas      2507 Jan 14 10:14 pandaJob.out
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas        57 Jan 14 10:14 setup.sh.local
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas    997566 Jan 14 10:15 agis_schedconf.cvmfs.json
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas   1516246 Jan 14 10:15 agis_ddmendpoints.agis.ALL.json
[2026-01-14 12:49:01] drwx------. 5 boincer umatlas      4096 Jan 14 10:15 pilot3
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas 143487328 Jan 14 12:47 HITS.48215263._021520.pool.root.1
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas       530 Jan 14 12:47 boinc_task_state.xml
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas      1054 Jan 14 12:47 memory_monitor_summary.json
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas    402188 Jan 14 12:48 log.48215263._021520.job.log.tgz.1
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas        95 Jan 14 12:48 pilot_heartbeat.json
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas      7824 Jan 14 12:48 heartbeat.json
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas      6842 Jan 14 12:48 init_data.xml
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas       823 Jan 14 12:49 pilotlog.txt
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas   1167361 Jan 14 12:49 log.48215263._021520.job.log.1
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas       357 Jan 14 12:49 output.list
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas       620 Jan 14 12:49 runtime_log
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas   1587200 Jan 14 12:49 result.tar.gz
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas        27 Jan 14 12:49 wrapper_checkpoint.txt
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas      8192 Jan 14 12:49 boinc_mmap_file
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas       654 Jan 14 12:49 yx8KDmHEE08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmK5qKDmBW5SKo.diag
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas      9347 Jan 14 12:49 runtime_log.err
[2026-01-14 12:49:01] -rw-r--r--. 1 boincer umatlas     21422 Jan 14 12:49 stderr.txt
[2026-01-14 12:49:01] HITS file was successfully produced:
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas 143487328 Jan 14 12:47 shared/HITS.pool.root.1
[2026-01-14 12:49:01]  *** Contents of shared directory: ***
[2026-01-14 12:49:01] total 721904
[2026-01-14 12:49:01] -rw-r--r--. 2 boincer umatlas 593527643 Jan 14 10:14 ATLAS.root_0
[2026-01-14 12:49:01] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 10:14 start_atlas.sh
[2026-01-14 12:49:01] -rw-r--r--. 2 boincer umatlas    592399 Jan 14 10:14 input.tar.gz
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas 143487328 Jan 14 12:47 HITS.pool.root.1
[2026-01-14 12:49:01] -rw-------. 1 boincer umatlas   1587200 Jan 14 12:49 result.tar.gz
12:49:03 (1453296): run_atlas exited; CPU time 23750.744121
12:49:03 (1453296): called boinc_finish(0)

</stderr_txt>
]]>

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