Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:18:00 (1196287): wrapper (7.7.26015): starting
09:18:00 (1196287): wrapper: running run_atlas (--nthreads 9)
[2026-01-14 09:18:00] Arguments: --nthreads 9
[2026-01-14 09:18:00] Threads: 9
[2026-01-14 09:18:00] Checking for CVMFS
[2026-01-14 09:18:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 09:18:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 09:18:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 09:18:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 09:18:02] 2.13.3.0 11160 100720 386780 155134 1 195 30189273 32935937 20539 16776704 0 288768331 99.515 437825754 40453 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-14 09:18:02] CVMFS is ok
[2026-01-14 09:18:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 09:18:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 09:18:02] Further information can be found at the LHC@home message board.
[2026-01-14 09:18:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 09:18:02] Checking for apptainer binary...
[2026-01-14 09:18:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 09:18:02] Running /usr/bin/apptainer --version
[2026-01-14 09:18:02] apptainer version 1.4.5-2.el9
[2026-01-14 09:18:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 09:18:03] c6-2-29-2.aglt2.org
[2026-01-14 09:18:03] apptainer works
[2026-01-14 09:18:03] Set ATHENA_PROC_NUMBER=9
[2026-01-14 09:18:03] Set ATHENA_CORE_NUMBER=9
[2026-01-14 09:18:03] Starting ATLAS job with PandaID=6969403147
[2026-01-14 09:18:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 11:32:48]  *** The last 200 lines of the pilot log: ***
[2026-01-14 11:32:48] 2026-01-14 16:31:43,432 | INFO     | time since job start (7961s) is within the limit (349056.0s)
[2026-01-14 11:32:48] 2026-01-14 16:31:44,104 | INFO     | monitor loop #521: job 0:6969403147 is in state 'finished'
[2026-01-14 11:32:48] 2026-01-14 16:31:44,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:32:48] 2026-01-14 16:31:45,440 | INFO     | time since job start (7963s) is within the limit (349056.0s)
[2026-01-14 11:32:48] 2026-01-14 16:31:46,634 | INFO     | monitor loop #522: job 0:6969403147 is in state 'finished'
[2026-01-14 11:32:48] 2026-01-14 16:31:46,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 11:32:48] 2026-01-14 16:31:46,820 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-14 11:32:48] 2026-01-14 16:31:46,846 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3133.6766607142863
[2026-01-14 11:32:48] 2026-01-14 16:31:46,918 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969403147/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 11:32:48] 2026-01-14 16:31:46,919 | INFO     | extracted standard info from prmon json
[2026-01-14 11:32:48] 2026-01-14 16:31:46,919 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 11:32:48] 2026-01-14 16:31:46,919 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 11:32:48] 2026-01-14 16:31:46,924 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 11:32:48] 2026-01-14 16:31:46,924 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 11:32:48] 2026-01-14 16:31:46,931 | INFO     | fitting pss+swap vs Time
[2026-01-14 11:32:48] 2026-01-14 16:31:46,942 | INFO     | sum of square deviations: 650313104.0
[2026-01-14 11:32:48] 2026-01-14 16:31:46,942 | INFO     | sum of deviations: -21495508948.0
[2026-01-14 11:32:48] 2026-01-14 16:31:46,943 | INFO     | mean x: 1768404343.75
[2026-01-14 11:32:48] 2026-01-14 16:31:46,943 | INFO     | mean y: 2672757.875
[2026-01-14 11:32:48] 2026-01-14 16:31:46,943 | INFO     | intersect: 58455672029.992065
[2026-01-14 11:32:48] 2026-01-14 16:31:46,943 | INFO     | chi2: 2.880704190484704
[2026-01-14 11:32:48] 2026-01-14 16:31:46,943 | INFO     | sum of square deviations: 577056373.6747977
[2026-01-14 11:32:48] 2026-01-14 16:31:46,944 | INFO     | sum of deviations: -11694296231.008121
[2026-01-14 11:32:48] 2026-01-14 16:31:46,944 | INFO     | mean x: 1768404191.2601626
[2026-01-14 11:32:48] 2026-01-14 16:31:46,944 | INFO     | mean y: 2692620.4065040653
[2026-01-14 11:32:48] 2026-01-14 16:31:46,944 | INFO     | intersect: 35840166066.990616
[2026-01-14 11:32:48] 2026-01-14 16:31:46,944 | INFO     | chi2: 2.204951675940407
[2026-01-14 11:32:48] 2026-01-14 16:31:46,944 | INFO     | current chi2=2.204951675940407 (change=23.457893274026016 %)
[2026-01-14 11:32:48] 2026-01-14 16:31:46,944 | INFO     | right removable region: 122
[2026-01-14 11:32:48] 2026-01-14 16:31:46,944 | INFO     | sum of square deviations: 577036853.6747977
[2026-01-14 11:32:48] 2026-01-14 16:31:46,945 | INFO     | sum of deviations: -47108074071.325195
[2026-01-14 11:32:48] 2026-01-14 16:31:46,945 | INFO     | mean x: 1768404496.2601626
[2026-01-14 11:32:48] 2026-01-14 16:31:46,945 | INFO     | mean y: 2725343.2601626017
[2026-01-14 11:32:48] 2026-01-14 16:31:46,945 | INFO     | intersect: 144371545926.1433
[2026-01-14 11:32:48] 2026-01-14 16:31:46,945 | INFO     | chi2: 0.9471254933562774
[2026-01-14 11:32:48] 2026-01-14 16:31:46,945 | INFO     | current chi2=0.9471254933562774 (change=67.1217372306139 %)
[2026-01-14 11:32:48] 2026-01-14 16:31:46,945 | INFO     | sum of square deviations: 509504390.37288004
[2026-01-14 11:32:48] 2026-01-14 16:31:46,964 | INFO     | sum of deviations: -45110454522.50846
[2026-01-14 11:32:48] 2026-01-14 16:31:46,964 | INFO     | mean x: 1768404648.7457628
[2026-01-14 11:32:48] 2026-01-14 16:31:46,964 | INFO     | mean y: 2720689.4830508474
[2026-01-14 11:32:48] 2026-01-14 16:31:46,964 | INFO     | intersect: 156573574625.12067
[2026-01-14 11:32:48] 2026-01-14 16:31:46,965 | INFO     | chi2: 0.9192920881303681
[2026-01-14 11:32:48] 2026-01-14 16:31:46,965 | INFO     | current chi2=0.9192920881303681 (change=2.938724110073052 %)
[2026-01-14 11:32:48] 2026-01-14 16:31:46,965 | INFO     | left removable region: 20
[2026-01-14 11:32:48] 2026-01-14 16:31:46,965 | INFO     | sum of square deviations: 329101402.3529419
[2026-01-14 11:32:48] 2026-01-14 16:31:46,965 | INFO     | sum of deviations: -25808682023.882366
[2026-01-14 11:32:48] 2026-01-14 16:31:46,965 | INFO     | mean x: 1768404770.764706
[2026-01-14 11:32:48] 2026-01-14 16:31:46,966 | INFO     | mean y: 2719959.588235294
[2026-01-14 11:32:48] 2026-01-14 16:31:46,966 | INFO     | intersect: 138683977747.83813
[2026-01-14 11:32:48] 2026-01-14 16:31:46,966 | INFO     | chi2: 0.1857958109277621
[2026-01-14 11:32:48] 2026-01-14 16:31:46,966 | INFO     | current memory leak: -78.42 B/s (using 102 data points, chi2=0.19)
[2026-01-14 11:32:48] 2026-01-14 16:31:46,966 | INFO     | could have reported an average CPU frequency of 3117 MHz (8 samples)
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | ..............................
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | . Timing measurements:
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | . get job = 0 s
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | . initial setup = 3 s
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | . payload setup = 37 s
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | . stage-in = 0 s
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | . payload execution = 7810 s
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | . stage-out = 3 s
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | . log creation = 0 s
[2026-01-14 11:32:48] 2026-01-14 16:31:46,967 | INFO     | ..............................
[2026-01-14 11:32:48] 2026-01-14 16:31:47,470 | INFO     | time since job start (7965s) is within the limit (349056.0s)
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | 
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | job summary report
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | --------------------------------------------------
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | PanDA job id: 6969403147
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | task id: 48215263
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | errors: (none)
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | pilot state: finished 
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | transexitcode: 0
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | exeerrorcode: 0
[2026-01-14 11:32:48] 2026-01-14 16:31:47,900 | INFO     | exeerrordiag: 
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | exitcode: 0
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | exitmsg: OK
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | cpuconsumptiontime: 25164 s
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | nevents: 400
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | neventsw: 0
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | pid: 1214769
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | pgrp: 1214769
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | corecount: 9
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | event service: False
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | sizes: {0: 2283118, 1: 2283803, 2: 2284002, 13: 2284002, 24: 2284058, 28: 2284348, 34: 2284504, 7853: 2312150, 7858: 2321148, 7862: 2321204, 7905: 2321398}
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | --------------------------------------------------
[2026-01-14 11:32:48] 2026-01-14 16:31:47,901 | INFO     | 
[2026-01-14 11:32:48] 2026-01-14 16:31:47,902 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-14 11:32:48] 2026-01-14 16:31:48,057 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | job 6969403147 has completed (purged errors)
[2026-01-14 11:32:48] 2026-01-14 16:31:48,059 | INFO     | overall cleanup function is called
[2026-01-14 11:32:48] 2026-01-14 16:31:49,081 | INFO     | --- collectZombieJob: --- 10, [1214769]
[2026-01-14 11:32:48] 2026-01-14 16:31:49,081 | INFO     | zombie collector waiting for pid 1214769
[2026-01-14 11:32:48] 2026-01-14 16:31:49,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 11:32:48] 2026-01-14 16:31:49,081 | INFO     | collected zombie processes
[2026-01-14 11:32:48] 2026-01-14 16:31:49,081 | INFO     | will attempt to kill all subprocesses of pid=1214769
[2026-01-14 11:32:48] 2026-01-14 16:31:52,204 | INFO     | process IDs to be killed: [1214769] (in reverse order)
[2026-01-14 11:32:48] 2026-01-14 16:31:53,204 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 11:32:48] 2026-01-14 16:31:53,205 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 11:32:48] 2026-01-14 16:31:53,335 | INFO     | did not find any defunct processes belonging to 1214769
[2026-01-14 11:32:48] 2026-01-14 16:31:53,393 | INFO     | did not find any defunct processes belonging to 1214769
[2026-01-14 11:32:48] 2026-01-14 16:31:53,398 | INFO     | ready for new job
[2026-01-14 11:32:48] 2026-01-14 16:31:53,398 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 11:32:48] 2026-01-14 16:31:53,400 | INFO     | ***************************************
[2026-01-14 11:32:48] 2026-01-14 16:31:53,400 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 11:32:48] 2026-01-14 16:31:53,400 | INFO     | ***************************************
[2026-01-14 11:32:48] 2026-01-14 16:31:53,400 | INFO     | 
[2026-01-14 11:32:48] 2026-01-14 16:31:53,409 | INFO     | architecture information:
[2026-01-14 11:32:48] 2026-01-14 16:31:53,410 | INFO     | executing command: cat /etc/os-release
[2026-01-14 11:32:48] 2026-01-14 16:31:53,451 | INFO     | cat /etc/os-release:
[2026-01-14 11:32:48] NAME="CentOS Linux"
[2026-01-14 11:32:48] VERSION="7 (Core)"
[2026-01-14 11:32:48] ID="centos"
[2026-01-14 11:32:48] ID_LIKE="rhel fedora"
[2026-01-14 11:32:48] VERSION_ID="7"
[2026-01-14 11:32:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 11:32:48] ANSI_COLOR="0;31"
[2026-01-14 11:32:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 11:32:48] HOME_URL="https://www.centos.org/"
[2026-01-14 11:32:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 11:32:48] 
[2026-01-14 11:32:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 11:32:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 11:32:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 11:32:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 11:32:48] 
[2026-01-14 11:32:48] 2026-01-14 16:31:53,451 | INFO     | ***************************************
[2026-01-14 11:32:48] 2026-01-14 16:31:53,955 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-14 11:32:48] 2026-01-14 16:31:54,160 | INFO     | sufficient remaining disk space (72677851136 B)
[2026-01-14 11:32:48] 2026-01-14 16:31:54,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 11:32:48] 2026-01-14 16:31:54,161 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 11:32:48] 2026-01-14 16:31:54,161 | INFO     | update_server=False
[2026-01-14 11:32:48] 2026-01-14 16:31:54,161 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 11:32:48] 2026-01-14 16:31:54,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 11:32:48] 2026-01-14 16:31:54,259 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-14 11:32:48] 2026-01-14 16:31:54,259 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 11:32:48] 2026-01-14 16:31:54,259 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 11:32:48] 2026-01-14 16:31:54,259 | INFO     | will abort loop
[2026-01-14 11:32:48] 2026-01-14 16:31:54,356 | INFO     | all payload control threads have been joined
[2026-01-14 11:32:48] 2026-01-14 16:31:54,922 | INFO     | all job control threads have been joined
[2026-01-14 11:32:48] 2026-01-14 16:31:55,124 | INFO     | all data control threads have been joined
[2026-01-14 11:32:48] 2026-01-14 16:31:55,181 | INFO     | [job] retrieve thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:55,232 | INFO     | [data] copytool_in thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:55,272 | INFO     | [job] validate thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:55,272 | INFO     | [job] job monitor thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:55,362 | INFO     | [payload] control thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:55,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 11:32:48] 2026-01-14 16:31:55,927 | INFO     | [job] control thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:55,934 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:56,038 | INFO     | [payload] validate_post thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:56,131 | INFO     | [data] control thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:56,187 | INFO     | [data] copytool_out thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:56,308 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:56,309 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:56,410 | INFO     | [payload] failed_post thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:56,521 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:56,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 11:32:48] 2026-01-14 16:31:57,827 | INFO     | [job] queue monitor thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:31:59,641 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 11:32:48] 2026-01-14 16:32:15,718 | INFO     | [monitor] cgroup control has ended
[2026-01-14 11:32:48] 2026-01-14 16:32:15,918 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140307895191360)>', '<ExcThread(monitor, started 140307161138944)>']
[2026-01-14 11:32:48] 2026-01-14 16:32:20,943 | INFO     | all workflow threads have been joined
[2026-01-14 11:32:48] 2026-01-14 16:32:20,943 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 11:32:48] 2026-01-14 16:32:20,943 | INFO     | traces error code: 0
[2026-01-14 11:32:48] 2026-01-14 16:32:20,943 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 11:32:48] 2026-01-14 16:32:25,996 | INFO     | PID=1200844 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 11:32:48] 2026-01-14 16:32:25,997 | INFO     | .. there are 24 such processes running
[2026-01-14 11:32:48] 2026-01-14 16:32:25,998 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 11:32:48] 2026-01-14 16:32:25,998 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 11:32:48] 2026-01-14 16:32:25,998 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 11:32:48] 2026-01-14 16:32:25,998 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 11:32:48] 2026-01-14 16:32:25,998 | INFO     | [monitor] control thread has ended
[2026-01-14 11:32:48] 2026-01-14 16:32:27,694 [wrapper] ==== pilot stdout END ====
[2026-01-14 11:32:48] 2026-01-14 16:32:27,713 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 11:32:48] 2026-01-14 16:32:27,734 [wrapper] pilotpid: 1200844
[2026-01-14 11:32:48] 2026-01-14 16:32:27,767 [wrapper] Pilot exit status: 0
[2026-01-14 11:32:48] 2026-01-14 16:32:27,842 [wrapper] pandaids: 6969403147
[2026-01-14 11:32:48] 2026-01-14 16:32:28,153 [wrapper] cleanup supervisor_pilot 1805758 1200845
[2026-01-14 11:32:48] 2026-01-14 16:32:28,402 [wrapper] Test setup, not cleaning
[2026-01-14 11:32:48] 2026-01-14 16:32:28,429 [wrapper] apfmon messages muted
[2026-01-14 11:32:48] 2026-01-14 16:32:28,473 [wrapper] ==== wrapper stdout END ====
[2026-01-14 11:32:48] 2026-01-14 16:32:28,521 [wrapper] ==== wrapper stderr END ====
[2026-01-14 11:32:48]  *** Error codes and diagnostics ***
[2026-01-14 11:32:48]     "exeErrorCode": 0,
[2026-01-14 11:32:48]     "exeErrorDiag": "",
[2026-01-14 11:32:48]     "pilotErrorCode": 0,
[2026-01-14 11:32:48]     "pilotErrorDiag": "",
[2026-01-14 11:32:49]  *** Listing of results directory ***
[2026-01-14 11:32:49] total 734012
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 02:33 pilot3.tar.gz
[2026-01-14 11:32:49] -rwx------. 1 boincer umatlas     36322 Jan 14 02:34 runpilot2-wrapper.sh
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 02:34 queuedata.json
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas       100 Jan 14 09:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 11:32:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 14 09:17 run_atlas
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas       105 Jan 14 09:17 job.xml
[2026-01-14 11:32:49] -rw-r--r--. 2 boincer umatlas 594485273 Jan 14 09:18 EVNT.32794306._000716.pool.root.1
[2026-01-14 11:32:49] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 09:18 start_atlas.sh
[2026-01-14 11:32:49] drwxrwx--x. 2 boincer umatlas      4096 Jan 14 09:18 shared
[2026-01-14 11:32:49] -rw-r--r--. 2 boincer umatlas    592406 Jan 14 09:18 input.tar.gz
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas         0 Jan 14 09:18 boinc_lockfile
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas      2505 Jan 14 09:18 pandaJob.out
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas        57 Jan 14 09:18 setup.sh.local
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas    997566 Jan 14 09:18 agis_schedconf.cvmfs.json
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas   1516246 Jan 14 09:19 agis_ddmendpoints.agis.ALL.json
[2026-01-14 11:32:49] drwx------. 5 boincer umatlas      4096 Jan 14 09:19 pilot3
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas 150387503 Jan 14 11:29 HITS.48215263._017854.pool.root.1
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas       531 Jan 14 11:29 boinc_task_state.xml
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas      1041 Jan 14 11:30 memory_monitor_summary.json
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas    371203 Jan 14 11:30 log.48215263._017854.job.log.tgz.1
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas        95 Jan 14 11:31 pilot_heartbeat.json
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas      7827 Jan 14 11:31 heartbeat.json
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas      6841 Jan 14 11:31 init_data.xml
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas       823 Jan 14 11:32 pilotlog.txt
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas   1047314 Jan 14 11:32 log.48215263._017854.job.log.1
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas       357 Jan 14 11:32 output.list
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas       620 Jan 14 11:32 runtime_log
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas   1433600 Jan 14 11:32 result.tar.gz
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas      9347 Jan 14 11:32 runtime_log.err
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas       654 Jan 14 11:32 EmzNDmYZA08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMMkKDmm2HLYn.diag
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas      8192 Jan 14 11:32 boinc_mmap_file
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas     21340 Jan 14 11:32 stderr.txt
[2026-01-14 11:32:49] -rw-r--r--. 1 boincer umatlas        27 Jan 14 11:32 wrapper_checkpoint.txt
[2026-01-14 11:32:49] HITS file was successfully produced:
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas 150387503 Jan 14 11:29 shared/HITS.pool.root.1
[2026-01-14 11:32:49]  *** Contents of shared directory: ***
[2026-01-14 11:32:49] total 729424
[2026-01-14 11:32:49] -rw-r--r--. 2 boincer umatlas 594485273 Jan 14 09:18 ATLAS.root_0
[2026-01-14 11:32:49] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 09:18 start_atlas.sh
[2026-01-14 11:32:49] -rw-r--r--. 2 boincer umatlas    592406 Jan 14 09:18 input.tar.gz
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas 150387503 Jan 14 11:29 HITS.pool.root.1
[2026-01-14 11:32:49] -rw-------. 1 boincer umatlas   1433600 Jan 14 11:32 result.tar.gz
11:32:50 (1196287): run_atlas exited; CPU time 25357.319139
11:32:50 (1196287): called boinc_finish(0)

</stderr_txt>
]]>

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