Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:38:53 (3125449): wrapper (7.7.26015): starting
08:38:53 (3125449): wrapper: running run_atlas (--nthreads 9)
[2026-01-14 08:38:53] Arguments: --nthreads 9
[2026-01-14 08:38:53] Threads: 9
[2026-01-14 08:38:53] Checking for CVMFS
[2026-01-14 08:38:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 08:38:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 08:38:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 08:38:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 08:38:54] 2.13.3.0 11959 100682 367272 155133 0 264 29582778 32935936 19634 16776704 0 422795960 99.498 578105991 34248 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-14 08:38:54] CVMFS is ok
[2026-01-14 08:38:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 08:38:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 08:38:54] Further information can be found at the LHC@home message board.
[2026-01-14 08:38:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 08:38:54] Checking for apptainer binary...
[2026-01-14 08:38:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 08:38:54] Running /usr/bin/apptainer --version
[2026-01-14 08:38:54] apptainer version 1.4.5-2.el9
[2026-01-14 08:38:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 08:38:54] c6-8-25-4.aglt2.org
[2026-01-14 08:38:54] apptainer works
[2026-01-14 08:38:54] Set ATHENA_PROC_NUMBER=9
[2026-01-14 08:38:54] Set ATHENA_CORE_NUMBER=9
[2026-01-14 08:38:54] Starting ATLAS job with PandaID=6969358841
[2026-01-14 08:38:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 09:57:19]  *** The last 200 lines of the pilot log: ***
[2026-01-14 09:57:19]  storage_token=
[2026-01-14 09:57:19]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6969358841/log.48215263._015771.job.log.tgz.1
[2026-01-14 09:57:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/be/log.48215263._015771.job.log.tgz.1
[2026-01-14 09:57:19]  workdir=None
[2026-01-14 09:57:19] ]
[2026-01-14 09:57:19] 2026-01-14 14:56:30,615 | INFO     | time since job start (4645s) is within the limit (349056.0s)
[2026-01-14 09:57:19] 2026-01-14 14:56:30,686 | INFO     | transferring file log.48215263._015771.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6969358841/log.48215263._015771.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-14 09:57:19] 2026-01-14 14:56:30,686 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6969358841/log.48215263._015771.job.log.tgz.1 /tmp/boinchome/slots/3/log.48215263._015771.job
[2026-01-14 09:57:19] 2026-01-14 14:56:30,720 | INFO     | adding to output.list: log.48215263._015771.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/be/log.48215263._015771.job.log.tg
[2026-01-14 09:57:19] 2026-01-14 14:56:30,721 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 09:57:19] 2026-01-14 14:56:30,721 | INFO     | summary of transferred files:
[2026-01-14 09:57:19] 2026-01-14 14:56:30,721 | INFO     |  -- lfn=log.48215263._015771.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 09:57:19] 2026-01-14 14:56:30,721 | INFO     | stage-out finished correctly
[2026-01-14 09:57:19] 2026-01-14 14:56:31,209 | WARNING  | process 3137464 can no longer be monitored (due to stat problems) - aborting
[2026-01-14 09:57:19] 2026-01-14 14:56:31,209 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6969358841/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 09:57:19] 2026-01-14 14:56:31,985 | INFO     | number of running child processes to parent process 3137464: 1
[2026-01-14 09:57:19] 2026-01-14 14:56:31,985 | INFO     | maximum number of monitored processes: 6
[2026-01-14 09:57:19] 2026-01-14 14:56:32,627 | INFO     | time since job start (4647s) is within the limit (349056.0s)
[2026-01-14 09:57:19] 2026-01-14 14:56:32,858 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 09:57:19] 2026-01-14 14:56:33,333 | INFO     | job 6969358841 has state=finished
[2026-01-14 09:57:19] 2026-01-14 14:56:33,333 | INFO     | preparing for final server update for job 6969358841 in state='finished'
[2026-01-14 09:57:19] 2026-01-14 14:56:33,334 | INFO     | this job has now completed (state=finished)
[2026-01-14 09:57:19] 2026-01-14 14:56:33,334 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 09:57:19] 2026-01-14 14:56:33,334 | INFO     | log transfer has been attempted: DONE
[2026-01-14 09:57:19] 2026-01-14 14:56:33,334 | INFO     | job 6969358841 has finished - writing final server update
[2026-01-14 09:57:19] 2026-01-14 14:56:33,334 | INFO     | total number of processed events: 400 (read)
[2026-01-14 09:57:19] 2026-01-14 14:56:33,353 | INFO     | executing command: lscpu
[2026-01-14 09:57:19] 2026-01-14 14:56:33,468 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 09:57:19] 2026-01-14 14:56:34,496 | INFO     | monitor loop #315: job 0:6969358841 is in state 'finished'
[2026-01-14 09:57:19] 2026-01-14 14:56:34,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 09:57:19] 2026-01-14 14:56:34,638 | INFO     | time since job start (4649s) is within the limit (349056.0s)
[2026-01-14 09:57:19] 2026-01-14 14:56:36,648 | INFO     | time since job start (4651s) is within the limit (349056.0s)
[2026-01-14 09:57:19] 2026-01-14 14:56:37,021 | INFO     | monitor loop #316: job 0:6969358841 is in state 'finished'
[2026-01-14 09:57:19] 2026-01-14 14:56:37,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 09:57:19] 2026-01-14 14:56:38,658 | INFO     | time since job start (4653s) is within the limit (349056.0s)
[2026-01-14 09:57:19] 2026-01-14 14:56:39,438 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-14 09:57:19] 2026-01-14 14:56:39,453 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2683.932760416668
[2026-01-14 09:57:19] 2026-01-14 14:56:39,471 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6969358841/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 09:57:19] 2026-01-14 14:56:39,471 | INFO     | extracted standard info from prmon json
[2026-01-14 09:57:19] 2026-01-14 14:56:39,472 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 09:57:19] 2026-01-14 14:56:39,472 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 09:57:19] 2026-01-14 14:56:39,472 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 09:57:19] 2026-01-14 14:56:39,472 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 09:57:19] 2026-01-14 14:56:39,474 | INFO     | fitting pss+swap vs Time
[2026-01-14 09:57:19] 2026-01-14 14:56:39,474 | INFO     | sum of square deviations: 101845969.768116
[2026-01-14 09:57:19] 2026-01-14 14:56:39,475 | INFO     | sum of deviations: -5031430360.362319
[2026-01-14 09:57:19] 2026-01-14 14:56:39,475 | INFO     | mean x: 1768400351.057971
[2026-01-14 09:57:19] 2026-01-14 14:56:39,475 | INFO     | mean y: 2654604.84057971
[2026-01-14 09:57:19] 2026-01-14 14:56:39,475 | INFO     | intersect: 87365789698.41936
[2026-01-14 09:57:19] 2026-01-14 14:56:39,475 | INFO     | chi2: 0.011849500924052419
[2026-01-14 09:57:19] 2026-01-14 14:56:39,476 | INFO     | current memory leak: -49.40 B/s (using 69 data points, chi2=0.01)
[2026-01-14 09:57:19] 2026-01-14 14:56:39,476 | INFO     | could have reported an average CPU frequency of 2706 MHz (6 samples)
[2026-01-14 09:57:19] 2026-01-14 14:56:39,476 | INFO     | ..............................
[2026-01-14 09:57:19] 2026-01-14 14:56:39,476 | INFO     | . Timing measurements:
[2026-01-14 09:57:19] 2026-01-14 14:56:39,476 | INFO     | . get job = 0 s
[2026-01-14 09:57:19] 2026-01-14 14:56:39,476 | INFO     | . initial setup = 2 s
[2026-01-14 09:57:19] 2026-01-14 14:56:39,476 | INFO     | . payload setup = 5 s
[2026-01-14 09:57:19] 2026-01-14 14:56:39,476 | INFO     | . stage-in = 0 s
[2026-01-14 09:57:19] 2026-01-14 14:56:39,477 | INFO     | . payload execution = 4617 s
[2026-01-14 09:57:19] 2026-01-14 14:56:39,477 | INFO     | . stage-out = 2 s
[2026-01-14 09:57:19] 2026-01-14 14:56:39,477 | INFO     | . log creation = 0 s
[2026-01-14 09:57:19] 2026-01-14 14:56:39,477 | INFO     | ..............................
[2026-01-14 09:57:19] 2026-01-14 14:56:39,579 | INFO     | 
[2026-01-14 09:57:19] 2026-01-14 14:56:39,579 | INFO     | job summary report
[2026-01-14 09:57:19] 2026-01-14 14:56:39,579 | INFO     | --------------------------------------------------
[2026-01-14 09:57:19] 2026-01-14 14:56:39,579 | INFO     | PanDA job id: 6969358841
[2026-01-14 09:57:19] 2026-01-14 14:56:39,579 | INFO     | task id: 48215263
[2026-01-14 09:57:19] 2026-01-14 14:56:39,579 | INFO     | errors: (none)
[2026-01-14 09:57:19] 2026-01-14 14:56:39,579 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | pilot state: finished 
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | transexitcode: 0
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | exeerrorcode: 0
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | exeerrordiag: 
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | exitcode: 0
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | exitmsg: OK
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | cpuconsumptiontime: 26969 s
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | nevents: 400
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | neventsw: 0
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | pid: 3137464
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | pgrp: 3137464
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | corecount: 9
[2026-01-14 09:57:19] 2026-01-14 14:56:39,580 | INFO     | event service: False
[2026-01-14 09:57:19] 2026-01-14 14:56:39,581 | INFO     | sizes: {0: 2283949, 5: 2284211, 11: 2284267, 4627: 2310632, 4630: 2319630, 4632: 2319686, 4638: 2320008}
[2026-01-14 09:57:19] 2026-01-14 14:56:39,581 | INFO     | --------------------------------------------------
[2026-01-14 09:57:19] 2026-01-14 14:56:39,581 | INFO     | 
[2026-01-14 09:57:19] 2026-01-14 14:56:39,581 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-14 09:57:19] 2026-01-14 14:56:39,611 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,611 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,613 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,613 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,613 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,613 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 09:57:19] 2026-01-14 14:56:39,613 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,613 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 09:57:19] 2026-01-14 14:56:39,613 | INFO     | job 6969358841 has completed (purged errors)
[2026-01-14 09:57:19] 2026-01-14 14:56:39,613 | INFO     | overall cleanup function is called
[2026-01-14 09:57:19] 2026-01-14 14:56:40,623 | INFO     | --- collectZombieJob: --- 10, [3137464]
[2026-01-14 09:57:19] 2026-01-14 14:56:40,623 | INFO     | zombie collector waiting for pid 3137464
[2026-01-14 09:57:19] 2026-01-14 14:56:40,623 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 09:57:19] 2026-01-14 14:56:40,623 | INFO     | collected zombie processes
[2026-01-14 09:57:19] 2026-01-14 14:56:40,623 | INFO     | will attempt to kill all subprocesses of pid=3137464
[2026-01-14 09:57:19] 2026-01-14 14:56:42,120 | INFO     | PID=3129221 has CPU usage=12.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-14 09:57:19] 2026-01-14 14:56:42,121 | INFO     | .. there are 23 such processes running
[2026-01-14 09:57:19] 2026-01-14 14:56:42,208 | INFO     | process IDs to be killed: [3137464] (in reverse order)
[2026-01-14 09:57:19] 2026-01-14 14:56:42,427 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 09:57:19] 2026-01-14 14:56:42,428 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 09:57:19] 2026-01-14 14:56:42,473 | INFO     | did not find any defunct processes belonging to 3137464
[2026-01-14 09:57:19] 2026-01-14 14:56:42,510 | INFO     | did not find any defunct processes belonging to 3137464
[2026-01-14 09:57:19] 2026-01-14 14:56:42,511 | INFO     | ready for new job
[2026-01-14 09:57:19] 2026-01-14 14:56:42,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 09:57:19] 2026-01-14 14:56:42,512 | INFO     | ***************************************
[2026-01-14 09:57:19] 2026-01-14 14:56:42,513 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 09:57:19] 2026-01-14 14:56:42,513 | INFO     | ***************************************
[2026-01-14 09:57:19] 2026-01-14 14:56:42,517 | INFO     | 
[2026-01-14 09:57:19] 2026-01-14 14:56:42,527 | INFO     | architecture information:
[2026-01-14 09:57:19] 2026-01-14 14:56:42,529 | INFO     | executing command: cat /etc/os-release
[2026-01-14 09:57:19] 2026-01-14 14:56:42,626 | INFO     | cat /etc/os-release:
[2026-01-14 09:57:19] NAME="CentOS Linux"
[2026-01-14 09:57:19] VERSION="7 (Core)"
[2026-01-14 09:57:19] ID="centos"
[2026-01-14 09:57:19] ID_LIKE="rhel fedora"
[2026-01-14 09:57:19] VERSION_ID="7"
[2026-01-14 09:57:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 09:57:19] ANSI_COLOR="0;31"
[2026-01-14 09:57:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 09:57:19] HOME_URL="https://www.centos.org/"
[2026-01-14 09:57:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 09:57:19] 
[2026-01-14 09:57:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 09:57:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 09:57:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 09:57:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 09:57:19] 
[2026-01-14 09:57:19] 2026-01-14 14:56:42,626 | INFO     | ***************************************
[2026-01-14 09:57:19] 2026-01-14 14:56:43,130 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-14 09:57:19] 2026-01-14 14:56:43,153 | INFO     | sufficient remaining disk space (67713892352 B)
[2026-01-14 09:57:19] 2026-01-14 14:56:43,153 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 09:57:19] 2026-01-14 14:56:43,154 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 09:57:19] 2026-01-14 14:56:43,154 | INFO     | update_server=False
[2026-01-14 09:57:19] 2026-01-14 14:56:43,154 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 09:57:19] 2026-01-14 14:56:43,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 09:57:19] 2026-01-14 14:56:43,158 | INFO     | aborting loop
[2026-01-14 09:57:19] 2026-01-14 14:56:43,695 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 09:57:19] 2026-01-14 14:56:43,792 | INFO     | all payload control threads have been joined
[2026-01-14 09:57:19] 2026-01-14 14:56:43,862 | INFO     | all data control threads have been joined
[2026-01-14 09:57:19] 2026-01-14 14:56:43,975 | INFO     | all job control threads have been joined
[2026-01-14 09:57:19] 2026-01-14 14:56:44,160 | INFO     | [job] retrieve thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:44,164 | INFO     | [job] job monitor thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:44,198 | INFO     | [job] validate thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:44,198 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:44,222 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 09:57:19] 2026-01-14 14:56:44,279 | INFO     | [payload] validate_post thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:44,585 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:44,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 09:57:19] 2026-01-14 14:56:44,798 | INFO     | [payload] control thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:44,868 | INFO     | [data] control thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:44,981 | INFO     | [job] control thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:44,981 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:45,184 | INFO     | [payload] failed_post thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:45,560 | INFO     | [data] copytool_in thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:45,634 | INFO     | [job] queue monitor thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:46,229 | INFO     | [data] copytool_out thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:47,705 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:56:53,843 | INFO     | job.realtimelogging is not enabled
[2026-01-14 09:57:19] 2026-01-14 14:56:54,850 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 09:57:19] 2026-01-14 14:57:12,952 | INFO     | [monitor] cgroup control has ended
[2026-01-14 09:57:19] 2026-01-14 14:57:13,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140573359036224)>', '<ExcThread(monitor, started 140572719306496)>']
[2026-01-14 09:57:19] 2026-01-14 14:57:15,767 | INFO     | PID=3129221 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 09:57:19] 2026-01-14 14:57:15,767 | INFO     | .. there are 23 such processes running
[2026-01-14 09:57:19] 2026-01-14 14:57:15,767 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 09:57:19] 2026-01-14 14:57:15,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 09:57:19] 2026-01-14 14:57:15,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 09:57:19] 2026-01-14 14:57:15,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 09:57:19] 2026-01-14 14:57:15,767 | INFO     | [monitor] control thread has ended
[2026-01-14 09:57:19] 2026-01-14 14:57:18,780 | INFO     | all workflow threads have been joined
[2026-01-14 09:57:19] 2026-01-14 14:57:18,780 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 09:57:19] 2026-01-14 14:57:18,780 | INFO     | traces error code: 0
[2026-01-14 09:57:19] 2026-01-14 14:57:18,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 09:57:19] 2026-01-14 14:57:19,111 [wrapper] ==== pilot stdout END ====
[2026-01-14 09:57:19] 2026-01-14 14:57:19,126 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 09:57:19] 2026-01-14 14:57:19,141 [wrapper] pilotpid: 3129221
[2026-01-14 09:57:19] 2026-01-14 14:57:19,147 [wrapper] Pilot exit status: 0
[2026-01-14 09:57:19] 2026-01-14 14:57:19,234 [wrapper] pandaids: 6969358841
[2026-01-14 09:57:19] 2026-01-14 14:57:19,459 [wrapper] cleanup supervisor_pilot 3545500 3129222
[2026-01-14 09:57:19] 2026-01-14 14:57:19,462 [wrapper] Test setup, not cleaning
[2026-01-14 09:57:19] 2026-01-14 14:57:19,464 [wrapper] apfmon messages muted
[2026-01-14 09:57:19] 2026-01-14 14:57:19,466 [wrapper] ==== wrapper stdout END ====
[2026-01-14 09:57:19] 2026-01-14 14:57:19,472 [wrapper] ==== wrapper stderr END ====
[2026-01-14 09:57:19]  *** Error codes and diagnostics ***
[2026-01-14 09:57:19]     "exeErrorCode": 0,
[2026-01-14 09:57:19]     "exeErrorDiag": "",
[2026-01-14 09:57:19]     "pilotErrorCode": 0,
[2026-01-14 09:57:19]     "pilotErrorDiag": "",
[2026-01-14 09:57:19]  *** Listing of results directory ***
[2026-01-14 09:57:19] total 736804
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 00:14 pilot3.tar.gz
[2026-01-14 09:57:19] -rwx------. 1 boincer umatlas     36322 Jan 14 00:17 runpilot2-wrapper.sh
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 00:17 queuedata.json
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas       100 Jan 14 08:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 09:57:19] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 14 08:38 run_atlas
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas       105 Jan 14 08:38 job.xml
[2026-01-14 09:57:19] -rw-r--r--. 2 boincer umatlas 596378821 Jan 14 08:38 EVNT.32794306._000631.pool.root.1
[2026-01-14 09:57:19] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 08:38 start_atlas.sh
[2026-01-14 09:57:19] drwxrwx--x. 2 boincer umatlas      4096 Jan 14 08:38 shared
[2026-01-14 09:57:19] -rw-r--r--. 2 boincer umatlas    592392 Jan 14 08:38 input.tar.gz
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas         0 Jan 14 08:38 boinc_lockfile
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas      2507 Jan 14 08:38 pandaJob.out
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas        57 Jan 14 08:38 setup.sh.local
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas    997566 Jan 14 08:39 agis_schedconf.cvmfs.json
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas   1516246 Jan 14 08:39 agis_ddmendpoints.agis.ALL.json
[2026-01-14 09:57:19] drwx------. 5 boincer umatlas      4096 Jan 14 08:39 pilot3
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas      6875 Jan 14 09:54 init_data.xml
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas 152149872 Jan 14 09:55 HITS.48215263._015771.pool.root.1
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas       530 Jan 14 09:55 boinc_task_state.xml
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas      1038 Jan 14 09:56 memory_monitor_summary.json
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas        95 Jan 14 09:56 pilot_heartbeat.json
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas    349118 Jan 14 09:56 log.48215263._015771.job.log.tgz.1
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas      7820 Jan 14 09:56 heartbeat.json
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas        27 Jan 14 09:57 wrapper_checkpoint.txt
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas      8192 Jan 14 09:57 boinc_mmap_file
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas      4896 Jan 14 09:57 pilotlog.txt
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas    665683 Jan 14 09:57 log.48215263._015771.job.log.1
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas       357 Jan 14 09:57 output.list
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas       620 Jan 14 09:57 runtime_log
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas   1034240 Jan 14 09:57 result.tar.gz
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas      9347 Jan 14 09:57 runtime_log.err
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas       652 Jan 14 09:57 GcfKDmWR8z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfCkKDmv8OZWm.diag
[2026-01-14 09:57:19] -rw-r--r--. 1 boincer umatlas     22331 Jan 14 09:57 stderr.txt
[2026-01-14 09:57:19] HITS file was successfully produced:
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas 152149872 Jan 14 09:55 shared/HITS.pool.root.1
[2026-01-14 09:57:19]  *** Contents of shared directory: ***
[2026-01-14 09:57:19] total 732604
[2026-01-14 09:57:19] -rw-r--r--. 2 boincer umatlas 596378821 Jan 14 08:38 ATLAS.root_0
[2026-01-14 09:57:19] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 08:38 start_atlas.sh
[2026-01-14 09:57:19] -rw-r--r--. 2 boincer umatlas    592392 Jan 14 08:38 input.tar.gz
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas 152149872 Jan 14 09:55 HITS.pool.root.1
[2026-01-14 09:57:19] -rw-------. 1 boincer umatlas   1034240 Jan 14 09:57 result.tar.gz
09:57:21 (3125449): run_atlas exited; CPU time 27157.609707
09:57:21 (3125449): called boinc_finish(0)

</stderr_txt>
]]>

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