Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:18:42 (262639): wrapper (7.7.26015): starting
20:18:42 (262639): wrapper: running run_atlas (--nthreads 2)
[2026-01-14 20:18:42] Arguments: --nthreads 2
[2026-01-14 20:18:42] Threads: 2
[2026-01-14 20:18:42] Checking for CVMFS
[2026-01-14 20:18:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 20:18:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 20:18:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 20:18:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 20:18:42] 2.9.2.0 4141607 1085 55776 155142 1 57 19924084 36864001 0 130560 0 856588 99.989 45269 2185 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 20:18:42] CVMFS is ok
[2026-01-14 20:18:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 20:18:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 20:18:42] Further information can be found at the LHC@home message board.
[2026-01-14 20:18:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 20:18:42] Checking for apptainer binary...
[2026-01-14 20:18:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 20:18:42] Running /usr/bin/apptainer --version
[2026-01-14 20:18:43] apptainer version 1.4.1-1.1
[2026-01-14 20:18:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 20:18:43] thA337
[2026-01-14 20:18:43] apptainer works
[2026-01-14 20:18:43] Set ATHENA_PROC_NUMBER=2
[2026-01-14 20:18:43] Set ATHENA_CORE_NUMBER=2
[2026-01-14 20:18:43] Starting ATLAS job with PandaID=6969358983
[2026-01-14 20:18:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 21:45:16]  *** The last 200 lines of the pilot log: ***
[2026-01-14 21:45:16] 2026-01-14 20:44:44,568 | INFO     | overall cleanup function is called
[2026-01-14 21:45:16] 2026-01-14 20:44:45,572 | INFO     | --- collectZombieJob: --- 10, [272768]
[2026-01-14 21:45:16] 2026-01-14 20:44:45,572 | INFO     | zombie collector waiting for pid 272768
[2026-01-14 21:45:16] 2026-01-14 20:44:45,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 21:45:16] 2026-01-14 20:44:45,574 | INFO     | collected zombie processes
[2026-01-14 21:45:16] 2026-01-14 20:44:45,574 | INFO     | will attempt to kill all subprocesses of pid=272768
[2026-01-14 21:45:16] 2026-01-14 20:44:45,607 | INFO     | process IDs to be killed: [272768] (in reverse order)
[2026-01-14 21:45:16] 2026-01-14 20:44:45,627 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 21:45:16] 2026-01-14 20:44:45,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 21:45:16] 2026-01-14 20:44:45,628 | INFO     | did not find any defunct processes belonging to 272768
[2026-01-14 21:45:16] 2026-01-14 20:44:45,629 | INFO     | did not find any defunct processes belonging to 272768
[2026-01-14 21:45:16] 2026-01-14 20:44:45,629 | INFO     | ready for new job
[2026-01-14 21:45:16] 2026-01-14 20:44:45,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 21:45:16] 2026-01-14 20:44:45,629 | INFO     | ***************************************
[2026-01-14 21:45:16] 2026-01-14 20:44:45,629 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 21:45:16] 2026-01-14 20:44:45,629 | INFO     | ***************************************
[2026-01-14 21:45:16] 2026-01-14 20:44:45,629 | INFO     | 
[2026-01-14 21:45:16] 2026-01-14 20:44:45,630 | INFO     | architecture information:
[2026-01-14 21:45:16] 2026-01-14 20:44:45,630 | INFO     | executing command: cat /etc/os-release
[2026-01-14 21:45:16] 2026-01-14 20:44:45,638 | INFO     | cat /etc/os-release:
[2026-01-14 21:45:16] NAME="CentOS Linux"
[2026-01-14 21:45:16] VERSION="7 (Core)"
[2026-01-14 21:45:16] ID="centos"
[2026-01-14 21:45:16] ID_LIKE="rhel fedora"
[2026-01-14 21:45:16] VERSION_ID="7"
[2026-01-14 21:45:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 21:45:16] ANSI_COLOR="0;31"
[2026-01-14 21:45:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 21:45:16] HOME_URL="https://www.centos.org/"
[2026-01-14 21:45:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 21:45:16] 
[2026-01-14 21:45:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 21:45:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 21:45:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 21:45:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 21:45:16] 
[2026-01-14 21:45:16] 2026-01-14 20:44:45,638 | INFO     | ***************************************
[2026-01-14 21:45:16] 2026-01-14 20:44:46,139 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 21:45:16] 2026-01-14 20:44:46,150 | INFO     | sufficient remaining disk space (488780070912 B)
[2026-01-14 21:45:16] 2026-01-14 20:44:46,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 21:45:16] 2026-01-14 20:44:46,151 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 21:45:16] 2026-01-14 20:44:46,151 | INFO     | update_server=False
[2026-01-14 21:45:16] 2026-01-14 20:44:46,151 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 21:45:16] 2026-01-14 20:44:46,151 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 21:45:16] 2026-01-14 20:44:46,151 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 21:45:16] 2026-01-14 20:44:46,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 21:45:16] 2026-01-14 20:44:46,273 | INFO     | aborting loop
[2026-01-14 21:45:16] 2026-01-14 20:44:46,314 | INFO     | all data control threads have been joined
[2026-01-14 21:45:16] 2026-01-14 20:44:46,480 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 21:45:16] 2026-01-14 20:44:46,580 | INFO     | all job control threads have been joined
[2026-01-14 21:45:16] 2026-01-14 20:44:47,156 | INFO     | [job] retrieve thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:47,157 | INFO     | [job] queue monitor thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:47,279 | INFO     | [job] job monitor thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:47,320 | INFO     | [data] control thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:47,433 | INFO     | [payload] failed_post thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:47,586 | INFO     | [job] control thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:47,643 | INFO     | all payload control threads have been joined
[2026-01-14 21:45:16] 2026-01-14 20:44:47,763 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:47,810 | INFO     | [job] validate thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:47,946 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:47,966 | INFO     | [payload] validate_post thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:48,006 | INFO     | [data] copytool_in thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:48,055 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:48,157 | INFO     | [data] copytool_out thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:48,232 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:48,649 | INFO     | [payload] control thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:44:50,487 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 21:45:16] 2026-01-14 20:45:03,384 | INFO     | [monitor] cgroup control has ended
[2026-01-14 21:45:16] 2026-01-14 20:45:03,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140550527731520)>', '<ExcThread(monitor, started 140550002939648)>']
[2026-01-14 21:45:16] 2026-01-14 20:45:08,912 | INFO     | all workflow threads have been joined
[2026-01-14 21:45:16] 2026-01-14 20:45:08,913 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 21:45:16] 2026-01-14 20:45:08,913 | INFO     | traces error code: 0
[2026-01-14 21:45:16] 2026-01-14 20:45:08,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 21:45:16] 2026-01-14 20:45:16,320 | INFO     | PID=266346 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 21:45:16] 2026-01-14 20:45:16,321 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 21:45:16] 2026-01-14 20:45:16,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 21:45:16] 2026-01-14 20:45:16,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 21:45:16] 2026-01-14 20:45:16,321 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 21:45:16] 2026-01-14 20:45:16,321 | CRITICAL | thread 'MainThread' is not alive
[2026-01-14 21:45:16] 2026-01-14 20:45:16,321 | INFO     | [monitor] control thread has ended
[2026-01-14 21:45:16] 2026-01-14 20:45:16,361 [wrapper] ==== pilot stdout END ====
[2026-01-14 21:45:16] 2026-01-14 20:45:16,364 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 21:45:16] 2026-01-14 20:45:16,366 [wrapper] pilotpid: 266346
[2026-01-14 21:45:16] 2026-01-14 20:45:16,369 [wrapper] Pilot exit status: 0
[2026-01-14 21:45:16] 2026-01-14 20:45:16,374 [wrapper] pandaids: 6969358983
[2026-01-14 21:45:16] 2026-01-14 20:45:16,387 [wrapper] cleanup supervisor_pilot  284188 266347
[2026-01-14 21:45:16] 2026-01-14 20:45:16,389 [wrapper] Test setup, not cleaning
[2026-01-14 21:45:16] 2026-01-14 20:45:16,391 [wrapper] apfmon messages muted
[2026-01-14 21:45:16] 2026-01-14 20:45:16,393 [wrapper] ==== wrapper stdout END ====
[2026-01-14 21:45:16] 2026-01-14 20:45:16,395 [wrapper] ==== wrapper stderr END ====
[2026-01-14 21:45:16]  *** Error codes and diagnostics ***
[2026-01-14 21:45:16]     "exeErrorCode": 0,
[2026-01-14 21:45:16]     "exeErrorDiag": "",
[2026-01-14 21:45:16]     "pilotErrorCode": 0,
[2026-01-14 21:45:16]     "pilotErrorDiag": "",
[2026-01-14 21:45:16]  *** Listing of results directory ***
[2026-01-14 21:45:16] total 739652
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc    579449 Jan 14 06:14 pilot3.tar.gz
[2026-01-14 21:45:16] -rwx------ 1 boinc boinc     36322 Jan 14 06:15 runpilot2-wrapper.sh
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc      5112 Jan 14 06:17 queuedata.json
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc       100 Jan 14 20:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 21:45:16] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 20:18 run_atlas
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc       105 Jan 14 20:18 job.xml
[2026-01-14 21:45:16] -rw-r--r-- 2 boinc boinc 593792006 Jan 14 20:18 EVNT.32794306._000637.pool.root.1
[2026-01-14 21:45:16] -rw-r--r-- 2 boinc boinc    592394 Jan 14 20:18 input.tar.gz
[2026-01-14 21:45:16] -rw-r--r-- 2 boinc boinc     15847 Jan 14 20:18 start_atlas.sh
[2026-01-14 21:45:16] drwxrwx--x 2 boinc boinc      4096 Jan 14 20:18 shared
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc         0 Jan 14 20:18 boinc_setup_complete
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc      6206 Jan 14 20:18 init_data.xml
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc         0 Jan 14 20:18 boinc_lockfile
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc      2506 Jan 14 20:18 pandaJob.out
[2026-01-14 21:45:16] -rw------- 1 boinc boinc    998072 Jan 14 20:18 agis_schedconf.cvmfs.json
[2026-01-14 21:45:16] -rw------- 1 boinc boinc   1516246 Jan 14 20:18 agis_ddmendpoints.agis.ALL.json
[2026-01-14 21:45:16] drwx------ 5 boinc boinc      4096 Jan 14 20:18 pilot3
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc       529 Jan 14 21:44 boinc_task_state.xml
[2026-01-14 21:45:16] -rw------- 1 boinc boinc 157719464 Jan 14 21:44 HITS.48215263._015913.pool.root.1
[2026-01-14 21:45:16] -rw------- 1 boinc boinc        95 Jan 14 21:44 pilot_heartbeat.json
[2026-01-14 21:45:16] -rw------- 1 boinc boinc      1013 Jan 14 21:44 memory_monitor_summary.json
[2026-01-14 21:45:16] -rw------- 1 boinc boinc    238636 Jan 14 21:44 log.48215263._015913.job.log.tgz.1
[2026-01-14 21:45:16] -rw------- 1 boinc boinc      7760 Jan 14 21:44 heartbeat.json
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc      8192 Jan 14 21:45 boinc_mmap_file
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc        26 Jan 14 21:45 wrapper_checkpoint.txt
[2026-01-14 21:45:16] -rw------- 1 boinc boinc       816 Jan 14 21:45 pilotlog.txt
[2026-01-14 21:45:16] -rw------- 1 boinc boinc    753538 Jan 14 21:45 log.48215263._015913.job.log.1
[2026-01-14 21:45:16] -rw------- 1 boinc boinc       357 Jan 14 21:45 output.list
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc       620 Jan 14 21:45 runtime_log
[2026-01-14 21:45:16] -rw------- 1 boinc boinc   1013760 Jan 14 21:45 result.tar.gz
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc      8897 Jan 14 21:45 runtime_log.err
[2026-01-14 21:45:16] -rw------- 1 boinc boinc       656 Jan 14 21:45 bL4KDmHP8z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm16jKDm9Ingin.diag
[2026-01-14 21:45:16] -rw-r--r-- 1 boinc boinc     10788 Jan 14 21:45 stderr.txt
[2026-01-14 21:45:16] HITS file was successfully produced:
[2026-01-14 21:45:16] -rw------- 1 boinc boinc 157719464 Jan 14 21:44 shared/HITS.pool.root.1
[2026-01-14 21:45:16]  *** Contents of shared directory: ***
[2026-01-14 21:45:16] total 735496
[2026-01-14 21:45:16] -rw-r--r-- 2 boinc boinc 593792006 Jan 14 20:18 ATLAS.root_0
[2026-01-14 21:45:16] -rw-r--r-- 2 boinc boinc    592394 Jan 14 20:18 input.tar.gz
[2026-01-14 21:45:16] -rw-r--r-- 2 boinc boinc     15847 Jan 14 20:18 start_atlas.sh
[2026-01-14 21:45:16] -rw------- 1 boinc boinc 157719464 Jan 14 21:44 HITS.pool.root.1
[2026-01-14 21:45:16] -rw------- 1 boinc boinc   1013760 Jan 14 21:45 result.tar.gz
21:45:17 (262639): run_atlas exited; CPU time 9887.399120
21:45:17 (262639): called boinc_finish(0)

</stderr_txt>
]]>

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