Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:55:50 (1347247): wrapper (7.7.26015): starting
14:55:50 (1347247): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 14:55:50] Arguments: --nthreads 3
[2026-01-14 14:55:50] Threads: 3
[2026-01-14 14:55:50] Checking for CVMFS
[2026-01-14 14:55:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 14:55:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 14:55:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 14:55:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 14:55:50] 2.9.2.0 1126407 571 69256 155133 2 57 24247166 36864001 0 130560 0 602604 99.992 23432 17382 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 14:55:50] CVMFS is ok
[2026-01-14 14:55:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 14:55:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 14:55:50] Further information can be found at the LHC@home message board.
[2026-01-14 14:55:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 14:55:50] Checking for apptainer binary...
[2026-01-14 14:55:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 14:55:50] Running /usr/bin/apptainer --version
[2026-01-14 14:55:50] apptainer version 1.4.1-1.1
[2026-01-14 14:55:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 14:55:50] atlasA223
[2026-01-14 14:55:50] apptainer works
[2026-01-14 14:55:50] Set ATHENA_PROC_NUMBER=3
[2026-01-14 14:55:50] Set ATHENA_CORE_NUMBER=3
[2026-01-14 14:55:50] Starting ATLAS job with PandaID=6969419800
[2026-01-14 14:55:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 15:53:07]  *** The last 200 lines of the pilot log: ***
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | job 6969419800 has completed (purged errors)
[2026-01-14 15:53:07] 2026-01-14 14:52:30,902 | INFO     | overall cleanup function is called
[2026-01-14 15:53:07] 2026-01-14 14:52:31,909 | INFO     | --- collectZombieJob: --- 10, [1357414]
[2026-01-14 15:53:07] 2026-01-14 14:52:31,909 | INFO     | zombie collector waiting for pid 1357414
[2026-01-14 15:53:07] 2026-01-14 14:52:31,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 15:53:07] 2026-01-14 14:52:31,909 | INFO     | collected zombie processes
[2026-01-14 15:53:07] 2026-01-14 14:52:31,909 | INFO     | will attempt to kill all subprocesses of pid=1357414
[2026-01-14 15:53:07] 2026-01-14 14:52:31,958 | INFO     | process IDs to be killed: [1357414] (in reverse order)
[2026-01-14 15:53:07] 2026-01-14 14:52:31,984 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 15:53:07] 2026-01-14 14:52:31,985 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 15:53:07] 2026-01-14 14:52:31,986 | INFO     | did not find any defunct processes belonging to 1357414
[2026-01-14 15:53:07] 2026-01-14 14:52:31,987 | INFO     | did not find any defunct processes belonging to 1357414
[2026-01-14 15:53:07] 2026-01-14 14:52:31,988 | INFO     | ready for new job
[2026-01-14 15:53:07] 2026-01-14 14:52:31,988 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 15:53:07] 2026-01-14 14:52:31,988 | INFO     | ***************************************
[2026-01-14 15:53:07] 2026-01-14 14:52:31,988 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 15:53:07] 2026-01-14 14:52:31,988 | INFO     | ***************************************
[2026-01-14 15:53:07] 2026-01-14 14:52:31,988 | INFO     | 
[2026-01-14 15:53:07] 2026-01-14 14:52:31,989 | INFO     | architecture information:
[2026-01-14 15:53:07] 2026-01-14 14:52:31,989 | INFO     | executing command: cat /etc/os-release
[2026-01-14 15:53:07] 2026-01-14 14:52:31,998 | INFO     | cat /etc/os-release:
[2026-01-14 15:53:07] NAME="CentOS Linux"
[2026-01-14 15:53:07] VERSION="7 (Core)"
[2026-01-14 15:53:07] ID="centos"
[2026-01-14 15:53:07] ID_LIKE="rhel fedora"
[2026-01-14 15:53:07] VERSION_ID="7"
[2026-01-14 15:53:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 15:53:07] ANSI_COLOR="0;31"
[2026-01-14 15:53:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 15:53:07] HOME_URL="https://www.centos.org/"
[2026-01-14 15:53:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 15:53:07] 
[2026-01-14 15:53:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 15:53:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 15:53:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 15:53:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 15:53:07] 
[2026-01-14 15:53:07] 2026-01-14 14:52:31,998 | INFO     | ***************************************
[2026-01-14 15:53:07] 2026-01-14 14:52:32,500 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 15:53:07] 2026-01-14 14:52:32,513 | INFO     | sufficient remaining disk space (380403449856 B)
[2026-01-14 15:53:07] 2026-01-14 14:52:32,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 15:53:07] 2026-01-14 14:52:32,513 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 15:53:07] 2026-01-14 14:52:32,513 | INFO     | update_server=False
[2026-01-14 15:53:07] 2026-01-14 14:52:32,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 15:53:07] 2026-01-14 14:52:32,513 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:53:07] 2026-01-14 14:52:32,513 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:53:07] 2026-01-14 14:52:32,513 | INFO     | aborting loop
[2026-01-14 15:53:07] 2026-01-14 14:52:32,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 15:53:07] 2026-01-14 14:52:32,748 | INFO     | all payload control threads have been joined
[2026-01-14 15:53:07] 2026-01-14 14:52:32,984 | INFO     | all data control threads have been joined
[2026-01-14 15:53:07] 2026-01-14 14:52:33,518 | INFO     | [job] retrieve thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:33,519 | INFO     | [job] queue monitor thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:33,519 | INFO     | [job] job monitor thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:33,534 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:33,754 | INFO     | [payload] control thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:33,990 | INFO     | [data] control thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:34,000 | INFO     | [payload] failed_post thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:34,093 | INFO     | all job control threads have been joined
[2026-01-14 15:53:07] 2026-01-14 14:52:34,367 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:34,466 | INFO     | [data] copytool_in thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:34,686 | INFO     | [data] copytool_out thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:34,911 | INFO     | [job] validate thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:34,997 | INFO     | [payload] validate_post thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:35,012 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:35,099 | INFO     | [job] control thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:35,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 15:53:07] 2026-01-14 14:52:39,238 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:52:43,214 | INFO     | job.realtimelogging is not enabled
[2026-01-14 15:53:07] 2026-01-14 14:52:44,219 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 15:53:07] 2026-01-14 14:53:01,048 | INFO     | [monitor] cgroup control has ended
[2026-01-14 15:53:07] 2026-01-14 14:53:02,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140384984749888)>', '<ExcThread(monitor, started 140384361510656)>']
[2026-01-14 15:53:07] 2026-01-14 14:53:02,237 | INFO     | PID=1350969 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 15:53:07] 2026-01-14 14:53:02,237 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 15:53:07] 2026-01-14 14:53:02,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 15:53:07] 2026-01-14 14:53:02,237 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 15:53:07] 2026-01-14 14:53:02,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 15:53:07] 2026-01-14 14:53:02,237 | INFO     | [monitor] control thread has ended
[2026-01-14 15:53:07] 2026-01-14 14:53:07,125 | INFO     | all workflow threads have been joined
[2026-01-14 15:53:07] 2026-01-14 14:53:07,125 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 15:53:07] 2026-01-14 14:53:07,126 | INFO     | traces error code: 0
[2026-01-14 15:53:07] 2026-01-14 14:53:07,126 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 15:53:07] 2026-01-14 14:53:07,175 [wrapper] ==== pilot stdout END ====
[2026-01-14 15:53:07] 2026-01-14 14:53:07,178 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 15:53:07] 2026-01-14 14:53:07,180 [wrapper] pilotpid: 1350969
[2026-01-14 15:53:07] 2026-01-14 14:53:07,183 [wrapper] Pilot exit status: 0
[2026-01-14 15:53:07] 2026-01-14 14:53:07,190 [wrapper] pandaids: 6969419800
[2026-01-14 15:53:07] 2026-01-14 14:53:07,207 [wrapper] cleanup supervisor_pilot 1366604 1350970
[2026-01-14 15:53:07] 2026-01-14 14:53:07,209 [wrapper] Test setup, not cleaning
[2026-01-14 15:53:07] 2026-01-14 14:53:07,212 [wrapper] apfmon messages muted
[2026-01-14 15:53:07] 2026-01-14 14:53:07,214 [wrapper] ==== wrapper stdout END ====
[2026-01-14 15:53:07] 2026-01-14 14:53:07,217 [wrapper] ==== wrapper stderr END ====
[2026-01-14 15:53:07]  *** Error codes and diagnostics ***
[2026-01-14 15:53:07]     "exeErrorCode": 0,
[2026-01-14 15:53:07]     "exeErrorDiag": "",
[2026-01-14 15:53:07]     "pilotErrorCode": 0,
[2026-01-14 15:53:07]     "pilotErrorDiag": "",
[2026-01-14 15:53:07]  *** Listing of results directory ***
[2026-01-14 15:53:07] total 734224
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc    579449 Jan 14 10:29 pilot3.tar.gz
[2026-01-14 15:53:07] -rwx------ 1 boinc boinc     36322 Jan 14 10:31 runpilot2-wrapper.sh
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc      5112 Jan 14 10:33 queuedata.json
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc       100 Jan 14 14:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 15:53:07] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 14:55 run_atlas
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc       105 Jan 14 14:55 job.xml
[2026-01-14 15:53:07] -rw-r--r-- 2 boinc boinc 594192815 Jan 14 14:55 EVNT.32794306._000800.pool.root.1
[2026-01-14 15:53:07] -rw-r--r-- 2 boinc boinc    592399 Jan 14 14:55 input.tar.gz
[2026-01-14 15:53:07] -rw-r--r-- 2 boinc boinc     15847 Jan 14 14:55 start_atlas.sh
[2026-01-14 15:53:07] drwxrwx--x 2 boinc boinc      4096 Jan 14 14:55 shared
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc         0 Jan 14 14:55 boinc_setup_complete
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc      6446 Jan 14 14:55 init_data.xml
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc         0 Jan 14 14:55 boinc_lockfile
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc      2506 Jan 14 14:55 pandaJob.out
[2026-01-14 15:53:07] -rw------- 1 boinc boinc    997566 Jan 14 14:55 agis_schedconf.cvmfs.json
[2026-01-14 15:53:07] -rw------- 1 boinc boinc   1516246 Jan 14 14:55 agis_ddmendpoints.agis.ALL.json
[2026-01-14 15:53:07] drwx------ 5 boinc boinc      4096 Jan 14 14:55 pilot3
[2026-01-14 15:53:07] -rw------- 1 boinc boinc 152262201 Jan 14 15:52 HITS.48215263._019964.pool.root.1
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc       529 Jan 14 15:52 boinc_task_state.xml
[2026-01-14 15:53:07] -rw------- 1 boinc boinc        95 Jan 14 15:52 pilot_heartbeat.json
[2026-01-14 15:53:07] -rw------- 1 boinc boinc      1011 Jan 14 15:52 memory_monitor_summary.json
[2026-01-14 15:53:07] -rw------- 1 boinc boinc    226548 Jan 14 15:52 log.48215263._019964.job.log.tgz.1
[2026-01-14 15:53:07] -rw------- 1 boinc boinc      7744 Jan 14 15:52 heartbeat.json
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc      8192 Jan 14 15:52 boinc_mmap_file
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc        26 Jan 14 15:52 wrapper_checkpoint.txt
[2026-01-14 15:53:07] -rw------- 1 boinc boinc      4824 Jan 14 15:53 pilotlog.txt
[2026-01-14 15:53:07] -rw------- 1 boinc boinc    514993 Jan 14 15:53 log.48215263._019964.job.log.1
[2026-01-14 15:53:07] -rw------- 1 boinc boinc       357 Jan 14 15:53 output.list
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc       620 Jan 14 15:53 runtime_log
[2026-01-14 15:53:07] -rw------- 1 boinc boinc    757760 Jan 14 15:53 result.tar.gz
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc      8912 Jan 14 15:53 runtime_log.err
[2026-01-14 15:53:07] -rw------- 1 boinc boinc       659 Jan 14 15:53 oEENDmuOC08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmidkKDmH0ZCUm.diag
[2026-01-14 15:53:07] -rw-r--r-- 1 boinc boinc     12029 Jan 14 15:53 stderr.txt
[2026-01-14 15:53:07] HITS file was successfully produced:
[2026-01-14 15:53:07] -rw------- 1 boinc boinc 152262201 Jan 14 15:52 shared/HITS.pool.root.1
[2026-01-14 15:53:07]  *** Contents of shared directory: ***
[2026-01-14 15:53:07] total 730308
[2026-01-14 15:53:07] -rw-r--r-- 2 boinc boinc 594192815 Jan 14 14:55 ATLAS.root_0
[2026-01-14 15:53:07] -rw-r--r-- 2 boinc boinc    592399 Jan 14 14:55 input.tar.gz
[2026-01-14 15:53:07] -rw-r--r-- 2 boinc boinc     15847 Jan 14 14:55 start_atlas.sh
[2026-01-14 15:53:07] -rw------- 1 boinc boinc 152262201 Jan 14 15:52 HITS.pool.root.1
[2026-01-14 15:53:07] -rw------- 1 boinc boinc    757760 Jan 14 15:53 result.tar.gz
15:53:08 (1347247): run_atlas exited; CPU time 9517.873513
15:53:08 (1347247): called boinc_finish(0)

</stderr_txt>
]]>

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