Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:25:12 (2898123): wrapper (7.7.26015): starting
15:25:12 (2898123): wrapper: running run_atlas (--nthreads 4)
[2026-01-14 15:25:12] Arguments: --nthreads 4
[2026-01-14 15:25:12] Threads: 4
[2026-01-14 15:25:12] Checking for CVMFS
[2026-01-14 15:25:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 15:25:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 15:25:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 15:25:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 15:25:12] 2.9.2.0 2429254 1087 89240 155134 3 57 21629447 36864001 0 130560 0 1225567 99.992 44068 13784 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 15:25:12] CVMFS is ok
[2026-01-14 15:25:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 15:25:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 15:25:12] Further information can be found at the LHC@home message board.
[2026-01-14 15:25:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 15:25:12] Checking for apptainer binary...
[2026-01-14 15:25:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 15:25:12] Running /usr/bin/apptainer --version
[2026-01-14 15:25:12] apptainer version 1.4.1-1.1
[2026-01-14 15:25:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 15:25:12] thA309
[2026-01-14 15:25:12] apptainer works
[2026-01-14 15:25:12] Set ATHENA_PROC_NUMBER=4
[2026-01-14 15:25:12] Set ATHENA_CORE_NUMBER=4
[2026-01-14 15:25:12] Starting ATLAS job with PandaID=6969419445
[2026-01-14 15:25:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 16:14:39]  *** The last 200 lines of the pilot log: ***
[2026-01-14 16:14:39] 2026-01-14 15:14:09,011 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 16:14:39] 2026-01-14 15:14:09,011 | INFO     | collected zombie processes
[2026-01-14 16:14:39] 2026-01-14 15:14:09,011 | INFO     | will attempt to kill all subprocesses of pid=2908498
[2026-01-14 16:14:39] 2026-01-14 15:14:09,063 | INFO     | process IDs to be killed: [2908498] (in reverse order)
[2026-01-14 16:14:39] 2026-01-14 15:14:09,100 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 16:14:39] 2026-01-14 15:14:09,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 16:14:39] 2026-01-14 15:14:09,102 | INFO     | did not find any defunct processes belonging to 2908498
[2026-01-14 16:14:39] 2026-01-14 15:14:09,104 | INFO     | did not find any defunct processes belonging to 2908498
[2026-01-14 16:14:39] 2026-01-14 15:14:09,104 | INFO     | ready for new job
[2026-01-14 16:14:39] 2026-01-14 15:14:09,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 16:14:39] 2026-01-14 15:14:09,105 | INFO     | ***************************************
[2026-01-14 16:14:39] 2026-01-14 15:14:09,105 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 16:14:39] 2026-01-14 15:14:09,105 | INFO     | ***************************************
[2026-01-14 16:14:39] 2026-01-14 15:14:09,105 | INFO     | 
[2026-01-14 16:14:39] 2026-01-14 15:14:09,105 | INFO     | architecture information:
[2026-01-14 16:14:39] 2026-01-14 15:14:09,105 | INFO     | executing command: cat /etc/os-release
[2026-01-14 16:14:39] 2026-01-14 15:14:09,120 | INFO     | cat /etc/os-release:
[2026-01-14 16:14:39] NAME="CentOS Linux"
[2026-01-14 16:14:39] VERSION="7 (Core)"
[2026-01-14 16:14:39] ID="centos"
[2026-01-14 16:14:39] ID_LIKE="rhel fedora"
[2026-01-14 16:14:39] VERSION_ID="7"
[2026-01-14 16:14:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 16:14:39] ANSI_COLOR="0;31"
[2026-01-14 16:14:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 16:14:39] HOME_URL="https://www.centos.org/"
[2026-01-14 16:14:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 16:14:39] 
[2026-01-14 16:14:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 16:14:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 16:14:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 16:14:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 16:14:39] 
[2026-01-14 16:14:39] 2026-01-14 15:14:09,121 | INFO     | ***************************************
[2026-01-14 16:14:39] 2026-01-14 15:14:09,624 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 16:14:39] 2026-01-14 15:14:09,644 | INFO     | sufficient remaining disk space (238523777024 B)
[2026-01-14 16:14:39] 2026-01-14 15:14:09,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 16:14:39] 2026-01-14 15:14:09,645 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 16:14:39] 2026-01-14 15:14:09,645 | INFO     | update_server=False
[2026-01-14 16:14:39] 2026-01-14 15:14:09,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 16:14:39] 2026-01-14 15:14:09,645 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 16:14:39] 2026-01-14 15:14:09,807 | INFO     | all data control threads have been joined
[2026-01-14 16:14:39] 2026-01-14 15:14:09,813 | INFO     | all payload control threads have been joined
[2026-01-14 16:14:39] 2026-01-14 15:14:10,061 | INFO     | all job control threads have been joined
[2026-01-14 16:14:39] 2026-01-14 15:14:10,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 16:14:39] 2026-01-14 15:14:10,432 | INFO     | aborting loop
[2026-01-14 16:14:39] 2026-01-14 15:14:10,650 | INFO     | [job] queue monitor thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:10,651 | INFO     | [job] retrieve thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:10,743 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:10,813 | INFO     | [data] control thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:10,818 | INFO     | [payload] validate_post thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:10,819 | INFO     | [payload] control thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:10,852 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 16:14:39] 2026-01-14 15:14:11,049 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:11,067 | INFO     | [job] control thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:11,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 16:14:39] 2026-01-14 15:14:11,275 | INFO     | [data] copytool_in thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:11,437 | INFO     | [job] job monitor thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:11,861 | INFO     | [payload] failed_post thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:12,032 | INFO     | [job] validate thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:12,051 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:12,858 | INFO     | [data] copytool_out thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:15,205 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:20,155 | INFO     | job.realtimelogging is not enabled
[2026-01-14 16:14:39] 2026-01-14 15:14:21,161 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 16:14:39] 2026-01-14 15:14:23,838 | INFO     | [monitor] cgroup control has ended
[2026-01-14 16:14:39] 2026-01-14 15:14:24,878 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139626131859264)>', '<ExcThread(monitor, started 139625242793728)>']
[2026-01-14 16:14:39] 2026-01-14 15:14:29,904 | INFO     | all workflow threads have been joined
[2026-01-14 16:14:39] 2026-01-14 15:14:29,904 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 16:14:39] 2026-01-14 15:14:29,905 | INFO     | traces error code: 0
[2026-01-14 16:14:39] 2026-01-14 15:14:29,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 16:14:39] 2026-01-14 15:14:39,273 | INFO     | PID=2901928 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 16:14:39] 2026-01-14 15:14:39,273 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 16:14:39] 2026-01-14 15:14:39,273 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 16:14:39] 2026-01-14 15:14:39,273 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 16:14:39] 2026-01-14 15:14:39,273 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 16:14:39] 2026-01-14 15:14:39,273 | INFO     | [monitor] control thread has ended
[2026-01-14 16:14:39] 2026-01-14 15:14:39,352 [wrapper] ==== pilot stdout END ====
[2026-01-14 16:14:39] 2026-01-14 15:14:39,357 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 16:14:39] 2026-01-14 15:14:39,361 [wrapper] pilotpid: 2901928
[2026-01-14 16:14:39] 2026-01-14 15:14:39,365 [wrapper] Pilot exit status: 0
[2026-01-14 16:14:39] 2026-01-14 15:14:39,377 [wrapper] pandaids: 6969419445
[2026-01-14 16:14:39] 2026-01-14 15:14:39,401 [wrapper] cleanup supervisor_pilot 2918361 2901929
[2026-01-14 16:14:39] 2026-01-14 15:14:39,405 [wrapper] Test setup, not cleaning
[2026-01-14 16:14:39] 2026-01-14 15:14:39,408 [wrapper] apfmon messages muted
[2026-01-14 16:14:39] 2026-01-14 15:14:39,412 [wrapper] ==== wrapper stdout END ====
[2026-01-14 16:14:39] 2026-01-14 15:14:39,416 [wrapper] ==== wrapper stderr END ====
[2026-01-14 16:14:39]  *** Error codes and diagnostics ***
[2026-01-14 16:14:39]     "exeErrorCode": 0,
[2026-01-14 16:14:39]     "exeErrorDiag": "",
[2026-01-14 16:14:39]     "pilotErrorCode": 0,
[2026-01-14 16:14:39]     "pilotErrorDiag": "",
[2026-01-14 16:14:39]  *** Listing of results directory ***
[2026-01-14 16:14:39] total 730928
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc    579449 Jan 14 10:29 pilot3.tar.gz
[2026-01-14 16:14:39] -rwx------ 1 boinc boinc     36322 Jan 14 10:31 runpilot2-wrapper.sh
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc      5112 Jan 14 10:31 queuedata.json
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc       100 Jan 14 15:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 16:14:39] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 15:25 run_atlas
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc       105 Jan 14 15:25 job.xml
[2026-01-14 16:14:39] -rw-r--r-- 2 boinc boinc 594023807 Jan 14 15:25 EVNT.32794306._000788.pool.root.1
[2026-01-14 16:14:39] -rw-r--r-- 2 boinc boinc    592403 Jan 14 15:25 input.tar.gz
[2026-01-14 16:14:39] -rw-r--r-- 2 boinc boinc     15847 Jan 14 15:25 start_atlas.sh
[2026-01-14 16:14:39] drwxrwx--x 2 boinc boinc      4096 Jan 14 15:25 shared
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc         0 Jan 14 15:25 boinc_setup_complete
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc      6377 Jan 14 15:25 init_data.xml
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc         0 Jan 14 15:25 boinc_lockfile
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc      2506 Jan 14 15:25 pandaJob.out
[2026-01-14 16:14:39] -rw------- 1 boinc boinc    997566 Jan 14 15:25 agis_schedconf.cvmfs.json
[2026-01-14 16:14:39] -rw------- 1 boinc boinc   1516246 Jan 14 15:25 agis_ddmendpoints.agis.ALL.json
[2026-01-14 16:14:39] drwx------ 5 boinc boinc      4096 Jan 14 15:25 pilot3
[2026-01-14 16:14:39] -rw------- 1 boinc boinc 149138185 Jan 14 16:13 HITS.48215263._019675.pool.root.1
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc       530 Jan 14 16:13 boinc_task_state.xml
[2026-01-14 16:14:39] -rw------- 1 boinc boinc      1019 Jan 14 16:13 memory_monitor_summary.json
[2026-01-14 16:14:39] -rw------- 1 boinc boinc    250197 Jan 14 16:13 log.48215263._019675.job.log.tgz.1
[2026-01-14 16:14:39] -rw------- 1 boinc boinc      7750 Jan 14 16:14 heartbeat.json
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc        27 Jan 14 16:14 wrapper_checkpoint.txt
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc      8192 Jan 14 16:14 boinc_mmap_file
[2026-01-14 16:14:39] -rw------- 1 boinc boinc       747 Jan 14 16:14 pilotlog.txt
[2026-01-14 16:14:39] -rw------- 1 boinc boinc        95 Jan 14 16:14 pilot_heartbeat.json
[2026-01-14 16:14:39] -rw------- 1 boinc boinc    450608 Jan 14 16:14 log.48215263._019675.job.log.1
[2026-01-14 16:14:39] -rw------- 1 boinc boinc       357 Jan 14 16:14 output.list
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc       620 Jan 14 16:14 runtime_log
[2026-01-14 16:14:39] -rw------- 1 boinc boinc    716800 Jan 14 16:14 result.tar.gz
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc      8897 Jan 14 16:14 runtime_log.err
[2026-01-14 16:14:39] -rw------- 1 boinc boinc       657 Jan 14 16:14 E5EMDmiOC08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmybkKDmN6EkKn.diag
[2026-01-14 16:14:39] -rw-r--r-- 1 boinc boinc     10509 Jan 14 16:14 stderr.txt
[2026-01-14 16:14:39] HITS file was successfully produced:
[2026-01-14 16:14:39] -rw------- 1 boinc boinc 149138185 Jan 14 16:13 shared/HITS.pool.root.1
[2026-01-14 16:14:39]  *** Contents of shared directory: ***
[2026-01-14 16:14:39] total 727052
[2026-01-14 16:14:39] -rw-r--r-- 2 boinc boinc 594023807 Jan 14 15:25 ATLAS.root_0
[2026-01-14 16:14:39] -rw-r--r-- 2 boinc boinc    592403 Jan 14 15:25 input.tar.gz
[2026-01-14 16:14:39] -rw-r--r-- 2 boinc boinc     15847 Jan 14 15:25 start_atlas.sh
[2026-01-14 16:14:39] -rw------- 1 boinc boinc 149138185 Jan 14 16:13 HITS.pool.root.1
[2026-01-14 16:14:39] -rw------- 1 boinc boinc    716800 Jan 14 16:14 result.tar.gz
16:14:41 (2898123): run_atlas exited; CPU time 10679.693786
16:14:41 (2898123): called boinc_finish(0)

</stderr_txt>
]]>

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