Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:17:08 (1516575): wrapper (7.7.26015): starting
14:17:08 (1516575): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 14:17:08] Arguments: --nthreads 3
[2026-01-14 14:17:08] Threads: 3
[2026-01-14 14:17:08] Checking for CVMFS
[2026-01-14 14:17:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 14:17:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 14:17:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 14:17:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 14:17:08] 2.9.2.0 1199050 852 69932 155133 1 56 20554308 36864000 0 130560 0 854848 99.991 37081 23454 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 14:17:08] CVMFS is ok
[2026-01-14 14:17:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 14:17:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 14:17:08] Further information can be found at the LHC@home message board.
[2026-01-14 14:17:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 14:17:08] Checking for apptainer binary...
[2026-01-14 14:17:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 14:17:08] Running /usr/bin/apptainer --version
[2026-01-14 14:17:08] apptainer version 1.4.1-1.1
[2026-01-14 14:17:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 14:17:08] cosA125
[2026-01-14 14:17:08] apptainer works
[2026-01-14 14:17:08] Set ATHENA_PROC_NUMBER=3
[2026-01-14 14:17:08] Set ATHENA_CORE_NUMBER=3
[2026-01-14 14:17:08] Starting ATLAS job with PandaID=6969309224
[2026-01-14 14:17:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 15:15:25]  *** The last 200 lines of the pilot log: ***
[2026-01-14 15:15:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-14 15:15:25]  replicas=None
[2026-01-14 15:15:25]  scope=mc23_13p6TeV
[2026-01-14 15:15:25]  status=None
[2026-01-14 15:15:25]  status_code=0
[2026-01-14 15:15:25]  storage_token=
[2026-01-14 15:15:25]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6969309224/log.48215263._014217.job.log.tgz.1
[2026-01-14 15:15:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/9a/log.48215263._014217.job.log.tgz.1
[2026-01-14 15:15:25]  workdir=None
[2026-01-14 15:15:25] ]
[2026-01-14 15:15:25] 2026-01-14 14:14:21,801 | INFO     | transferring file log.48215263._014217.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6969309224/log.48215263._014217.job.log.tgz.1 to /local/data/boinc/
[2026-01-14 15:15:25] 2026-01-14 14:14:21,801 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6969309224/log.48215263._014217.job.log.tgz.1 /local/data/boinc/slots/0/log.48215263._0142
[2026-01-14 15:15:25] 2026-01-14 14:14:21,807 | INFO     | time since job start (3427s) is within the limit (349056.0s)
[2026-01-14 15:15:25] 2026-01-14 14:14:21,813 | INFO     | adding to output.list: log.48215263._014217.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/9a/log.48215263._014217.job.log.tg
[2026-01-14 15:15:25] 2026-01-14 14:14:21,813 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 15:15:25] 2026-01-14 14:14:21,813 | INFO     | summary of transferred files:
[2026-01-14 15:15:25] 2026-01-14 14:14:21,814 | INFO     |  -- lfn=log.48215263._014217.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 15:15:25] 2026-01-14 14:14:21,814 | INFO     | stage-out finished correctly
[2026-01-14 15:15:25] 2026-01-14 14:14:22,880 | INFO     | PID=1520293 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 15:15:25] 2026-01-14 14:14:23,149 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 15:15:25] 2026-01-14 14:14:23,381 | INFO     | monitor loop #265: job 0:6969309224 is in state 'finished'
[2026-01-14 15:15:25] 2026-01-14 14:14:23,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:15:25] 2026-01-14 14:14:23,881 | INFO     | time since job start (3429s) is within the limit (349056.0s)
[2026-01-14 15:15:25] 2026-01-14 14:14:24,844 | INFO     | job 6969309224 has state=finished
[2026-01-14 15:15:25] 2026-01-14 14:14:24,844 | INFO     | preparing for final server update for job 6969309224 in state='finished'
[2026-01-14 15:15:25] 2026-01-14 14:14:24,844 | INFO     | this job has now completed (state=finished)
[2026-01-14 15:15:25] 2026-01-14 14:14:24,844 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 15:15:25] 2026-01-14 14:14:24,844 | INFO     | log transfer has been attempted: DONE
[2026-01-14 15:15:25] 2026-01-14 14:14:24,844 | INFO     | job 6969309224 has finished - writing final server update
[2026-01-14 15:15:25] 2026-01-14 14:14:24,844 | INFO     | total number of processed events: 400 (read)
[2026-01-14 15:15:25] 2026-01-14 14:14:24,845 | INFO     | executing command: lscpu
[2026-01-14 15:15:25] 2026-01-14 14:14:24,858 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 15:15:25] 2026-01-14 14:14:25,884 | INFO     | monitor loop #266: job 0:6969309224 is in state 'finished'
[2026-01-14 15:15:25] 2026-01-14 14:14:25,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:15:25] 2026-01-14 14:14:25,886 | INFO     | time since job start (3431s) is within the limit (349056.0s)
[2026-01-14 15:15:25] 2026-01-14 14:14:27,891 | INFO     | time since job start (3433s) is within the limit (349056.0s)
[2026-01-14 15:15:25] 2026-01-14 14:14:28,389 | INFO     | monitor loop #267: job 0:6969309224 is in state 'finished'
[2026-01-14 15:15:25] 2026-01-14 14:14:28,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:15:25] 2026-01-14 14:14:29,163 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 15:15:25] 2026-01-14 14:14:29,165 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3941.990416666666
[2026-01-14 15:15:25] 2026-01-14 14:14:29,166 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6969309224/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 15:15:25] 2026-01-14 14:14:29,166 | INFO     | extracted standard info from prmon json
[2026-01-14 15:15:25] 2026-01-14 14:14:29,166 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 15:15:25] 2026-01-14 14:14:29,166 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 15:15:25] 2026-01-14 14:14:29,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 15:15:25] 2026-01-14 14:14:29,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 15:15:25] 2026-01-14 14:14:29,167 | INFO     | fitting pss+swap vs Time
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | sum of square deviations: 36465800.0
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | sum of deviations: -1403917867.0000002
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | mean x: 1768398423.0
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | mean y: 2635583.06122449
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | intersect: 68085226449.690346
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | chi2: 0.012497424747107865
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | current memory leak: -38.50 B/s (using 49 data points, chi2=0.01)
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | could have reported an average CPU frequency of 3919 MHz (5 samples)
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | ..............................
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | . Timing measurements:
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | . get job = 0 s
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | . initial setup = 1 s
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | . payload setup = 2 s
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | . stage-in = 0 s
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | . payload execution = 3406 s
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | . stage-out = 0 s
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | . log creation = 0 s
[2026-01-14 15:15:25] 2026-01-14 14:14:29,168 | INFO     | ..............................
[2026-01-14 15:15:25] 2026-01-14 14:14:29,307 | INFO     | 
[2026-01-14 15:15:25] 2026-01-14 14:14:29,307 | INFO     | job summary report
[2026-01-14 15:15:25] 2026-01-14 14:14:29,307 | INFO     | --------------------------------------------------
[2026-01-14 15:15:25] 2026-01-14 14:14:29,307 | INFO     | PanDA job id: 6969309224
[2026-01-14 15:15:25] 2026-01-14 14:14:29,307 | INFO     | task id: 48215263
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | errors: (none)
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | pilot state: finished 
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | transexitcode: 0
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | exeerrorcode: 0
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | exeerrordiag: 
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | exitcode: 0
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | exitmsg: OK
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | cpuconsumptiontime: 9664 s
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | nevents: 400
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | neventsw: 0
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | pid: 1526734
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | pgrp: 1526734
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | corecount: 3
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | event service: False
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | sizes: {0: 2283951, 3: 2284213, 11: 2284241, 3413: 2309970, 3415: 2318974, 3416: 2319030, 3422: 2319384}
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | --------------------------------------------------
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | 
[2026-01-14 15:15:25] 2026-01-14 14:14:29,308 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | job 6969309224 has completed (purged errors)
[2026-01-14 15:15:25] 2026-01-14 14:14:29,320 | INFO     | overall cleanup function is called
[2026-01-14 15:15:25] 2026-01-14 14:14:30,327 | INFO     | --- collectZombieJob: --- 10, [1526734]
[2026-01-14 15:15:25] 2026-01-14 14:14:30,327 | INFO     | zombie collector waiting for pid 1526734
[2026-01-14 15:15:25] 2026-01-14 14:14:30,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 15:15:25] 2026-01-14 14:14:30,327 | INFO     | collected zombie processes
[2026-01-14 15:15:25] 2026-01-14 14:14:30,327 | INFO     | will attempt to kill all subprocesses of pid=1526734
[2026-01-14 15:15:25] 2026-01-14 14:14:30,378 | INFO     | process IDs to be killed: [1526734] (in reverse order)
[2026-01-14 15:15:25] 2026-01-14 14:14:30,407 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 15:15:25] 2026-01-14 14:14:30,407 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 15:15:25] 2026-01-14 14:14:30,409 | INFO     | did not find any defunct processes belonging to 1526734
[2026-01-14 15:15:25] 2026-01-14 14:14:30,410 | INFO     | did not find any defunct processes belonging to 1526734
[2026-01-14 15:15:25] 2026-01-14 14:14:30,410 | INFO     | ready for new job
[2026-01-14 15:15:25] 2026-01-14 14:14:30,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 15:15:25] 2026-01-14 14:14:30,411 | INFO     | ***************************************
[2026-01-14 15:15:25] 2026-01-14 14:14:30,411 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 15:15:25] 2026-01-14 14:14:30,411 | INFO     | ***************************************
[2026-01-14 15:15:25] 2026-01-14 14:14:30,411 | INFO     | 
[2026-01-14 15:15:25] 2026-01-14 14:14:30,412 | INFO     | architecture information:
[2026-01-14 15:15:25] 2026-01-14 14:14:30,412 | INFO     | executing command: cat /etc/os-release
[2026-01-14 15:15:25] 2026-01-14 14:14:30,421 | INFO     | cat /etc/os-release:
[2026-01-14 15:15:25] NAME="CentOS Linux"
[2026-01-14 15:15:25] VERSION="7 (Core)"
[2026-01-14 15:15:25] ID="centos"
[2026-01-14 15:15:25] ID_LIKE="rhel fedora"
[2026-01-14 15:15:25] VERSION_ID="7"
[2026-01-14 15:15:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 15:15:25] ANSI_COLOR="0;31"
[2026-01-14 15:15:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 15:15:25] HOME_URL="https://www.centos.org/"
[2026-01-14 15:15:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 15:15:25] 
[2026-01-14 15:15:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 15:15:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 15:15:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 15:15:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 15:15:25] 
[2026-01-14 15:15:25] 2026-01-14 14:14:30,421 | INFO     | ***************************************
[2026-01-14 15:15:25] 2026-01-14 14:14:30,924 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 15:15:25] 2026-01-14 14:14:30,934 | INFO     | sufficient remaining disk space (338721505280 B)
[2026-01-14 15:15:25] 2026-01-14 14:14:30,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 15:15:25] 2026-01-14 14:14:30,934 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 15:15:25] 2026-01-14 14:14:30,934 | INFO     | update_server=False
[2026-01-14 15:15:25] 2026-01-14 14:14:30,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 15:15:25] 2026-01-14 14:14:30,934 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:15:25] 2026-01-14 14:14:31,122 | INFO     | all job control threads have been joined
[2026-01-14 15:15:25] 2026-01-14 14:14:31,215 | INFO     | all payload control threads have been joined
[2026-01-14 15:15:25] 2026-01-14 14:14:31,601 | INFO     | all data control threads have been joined
[2026-01-14 15:15:25] 2026-01-14 14:14:31,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:15:25] 2026-01-14 14:14:31,897 | INFO     | aborting loop
[2026-01-14 15:15:25] 2026-01-14 14:14:31,939 | INFO     | [job] retrieve thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:31,939 | INFO     | [job] queue monitor thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:31,989 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:32,127 | INFO     | [job] control thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:32,220 | INFO     | [payload] control thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:32,355 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 15:15:25] 2026-01-14 14:14:32,428 | INFO     | [payload] validate_post thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:32,607 | INFO     | [data] control thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:32,902 | INFO     | [job] job monitor thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:32,905 | INFO     | [data] copytool_in thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:32,905 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:33,355 | INFO     | [job] validate thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:33,404 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:33,501 | INFO     | [payload] failed_post thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:33,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 15:15:25] 2026-01-14 14:14:34,360 | INFO     | [data] copytool_out thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:37,697 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:14:41,908 | INFO     | job.realtimelogging is not enabled
[2026-01-14 15:15:25] 2026-01-14 14:14:42,913 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 15:15:25] 2026-01-14 14:15:01,018 | INFO     | PID=1520293 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 15:15:25] 2026-01-14 14:15:01,019 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 15:15:25] 2026-01-14 14:15:01,019 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 15:15:25] 2026-01-14 14:15:01,019 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 15:15:25] 2026-01-14 14:15:17,970 | INFO     | [monitor] cgroup control has ended
[2026-01-14 15:15:25] 2026-01-14 14:15:19,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783222040384)>', '<ExcThread(monitor, started 139782596327168)>']
[2026-01-14 15:15:25] 2026-01-14 14:15:20,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 15:15:25] 2026-01-14 14:15:20,106 | INFO     | [monitor] control thread has ended
[2026-01-14 15:15:25] 2026-01-14 14:15:25,021 | INFO     | all workflow threads have been joined
[2026-01-14 15:15:25] 2026-01-14 14:15:25,021 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 15:15:25] 2026-01-14 14:15:25,021 | INFO     | traces error code: 0
[2026-01-14 15:15:25] 2026-01-14 14:15:25,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 15:15:25] 2026-01-14 14:15:25,073 [wrapper] ==== pilot stdout END ====
[2026-01-14 15:15:25] 2026-01-14 14:15:25,076 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 15:15:25] 2026-01-14 14:15:25,078 [wrapper] pilotpid: 1520293
[2026-01-14 15:15:25] 2026-01-14 14:15:25,080 [wrapper] Pilot exit status: 0
[2026-01-14 15:15:25] 2026-01-14 14:15:25,087 [wrapper] pandaids: 6969309224
[2026-01-14 15:15:25] 2026-01-14 14:15:25,106 [wrapper] cleanup supervisor_pilot 1536096 1520294
[2026-01-14 15:15:25] 2026-01-14 14:15:25,108 [wrapper] Test setup, not cleaning
[2026-01-14 15:15:25] 2026-01-14 14:15:25,111 [wrapper] apfmon messages muted
[2026-01-14 15:15:25] 2026-01-14 14:15:25,113 [wrapper] ==== wrapper stdout END ====
[2026-01-14 15:15:25] 2026-01-14 14:15:25,115 [wrapper] ==== wrapper stderr END ====
[2026-01-14 15:15:25]  *** Error codes and diagnostics ***
[2026-01-14 15:15:25]     "exeErrorCode": 0,
[2026-01-14 15:15:25]     "exeErrorDiag": "",
[2026-01-14 15:15:25]     "pilotErrorCode": 0,
[2026-01-14 15:15:25]     "pilotErrorDiag": "",
[2026-01-14 15:15:25]  *** Listing of results directory ***
[2026-01-14 15:15:25] total 746236
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc    579449 Jan 14 04:13 pilot3.tar.gz
[2026-01-14 15:15:25] -rwx------ 1 boinc boinc     36322 Jan 14 04:17 runpilot2-wrapper.sh
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc      5112 Jan 14 04:21 queuedata.json
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc       100 Jan 14 14:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 15:15:25] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 14:17 run_atlas
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc       105 Jan 14 14:17 job.xml
[2026-01-14 15:15:25] -rw-r--r-- 2 boinc boinc 602227317 Jan 14 14:17 EVNT.32794306._000569.pool.root.1
[2026-01-14 15:15:25] drwxrwx--x 2 boinc boinc      4096 Jan 14 14:17 shared
[2026-01-14 15:15:25] -rw-r--r-- 2 boinc boinc    592399 Jan 14 14:17 input.tar.gz
[2026-01-14 15:15:25] -rw-r--r-- 2 boinc boinc     15847 Jan 14 14:17 start_atlas.sh
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc         0 Jan 14 14:17 boinc_setup_complete
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc      6438 Jan 14 14:17 init_data.xml
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc         0 Jan 14 14:17 boinc_lockfile
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc      2506 Jan 14 14:17 pandaJob.out
[2026-01-14 15:15:25] -rw------- 1 boinc boinc    997566 Jan 14 14:17 agis_schedconf.cvmfs.json
[2026-01-14 15:15:25] -rw------- 1 boinc boinc   1516246 Jan 14 14:17 agis_ddmendpoints.agis.ALL.json
[2026-01-14 15:15:25] drwx------ 5 boinc boinc      4096 Jan 14 14:17 pilot3
[2026-01-14 15:15:25] -rw------- 1 boinc boinc 156477514 Jan 14 15:14 HITS.48215263._014217.pool.root.1
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc       530 Jan 14 15:14 boinc_task_state.xml
[2026-01-14 15:15:25] -rw------- 1 boinc boinc      1021 Jan 14 15:14 memory_monitor_summary.json
[2026-01-14 15:15:25] -rw------- 1 boinc boinc    235793 Jan 14 15:14 log.48215263._014217.job.log.tgz.1
[2026-01-14 15:15:25] -rw------- 1 boinc boinc      7755 Jan 14 15:14 heartbeat.json
[2026-01-14 15:15:25] -rw------- 1 boinc boinc        95 Jan 14 15:15 pilot_heartbeat.json
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc        26 Jan 14 15:15 wrapper_checkpoint.txt
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc      8192 Jan 14 15:15 boinc_mmap_file
[2026-01-14 15:15:25] -rw------- 1 boinc boinc      4824 Jan 14 15:15 pilotlog.txt
[2026-01-14 15:15:25] -rw------- 1 boinc boinc    520799 Jan 14 15:15 log.48215263._014217.job.log.1
[2026-01-14 15:15:25] -rw------- 1 boinc boinc       357 Jan 14 15:15 output.list
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc       620 Jan 14 15:15 runtime_log
[2026-01-14 15:15:25] -rw------- 1 boinc boinc    778240 Jan 14 15:15 result.tar.gz
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc      8902 Jan 14 15:15 runtime_log.err
[2026-01-14 15:15:25] -rw------- 1 boinc boinc       657 Jan 14 15:15 UVRKDmBZ6z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrCqKDmx9vDdn.diag
[2026-01-14 15:15:25] -rw-r--r-- 1 boinc boinc     22018 Jan 14 15:15 stderr.txt
[2026-01-14 15:15:25] HITS file was successfully produced:
[2026-01-14 15:15:25] -rw------- 1 boinc boinc 156477514 Jan 14 15:14 shared/HITS.pool.root.1
[2026-01-14 15:15:25]  *** Contents of shared directory: ***
[2026-01-14 15:15:25] total 742292
[2026-01-14 15:15:25] -rw-r--r-- 2 boinc boinc 602227317 Jan 14 14:17 ATLAS.root_0
[2026-01-14 15:15:25] -rw-r--r-- 2 boinc boinc    592399 Jan 14 14:17 input.tar.gz
[2026-01-14 15:15:25] -rw-r--r-- 2 boinc boinc     15847 Jan 14 14:17 start_atlas.sh
[2026-01-14 15:15:25] -rw------- 1 boinc boinc 156477514 Jan 14 15:14 HITS.pool.root.1
[2026-01-14 15:15:25] -rw------- 1 boinc boinc    778240 Jan 14 15:15 result.tar.gz
15:15:27 (1516575): run_atlas exited; CPU time 9681.341315
15:15:27 (1516575): called boinc_finish(0)

</stderr_txt>
]]>

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