Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:43:10 (2657): wrapper (7.7.26015): starting
15:43:10 (2657): wrapper: running run_atlas (--nthreads 8)
[2026-01-14 15:43:10] Arguments: --nthreads 8
[2026-01-14 15:43:10] Threads: 8
[2026-01-14 15:43:10] Checking for CVMFS
[2026-01-14 15:43:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 15:43:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 15:43:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 15:43:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 15:43:13] 2.11.2.0 17161 22992 102292 155134 0 65 23602560 25165825 96 130560 0 3696172 99.548 3529196 3048 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-14 15:43:13] CVMFS is ok
[2026-01-14 15:43:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 15:43:13] Checking for apptainer binary...
[2026-01-14 15:43:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 15:43:13] Running /usr/bin/apptainer --version
[2026-01-14 15:43:13] apptainer version 1.3.2-1.el7
[2026-01-14 15:43:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 15:43:19] cg-vwn491.simple-grid.lan
[2026-01-14 15:43:19] apptainer works
[2026-01-14 15:43:20] Set ATHENA_PROC_NUMBER=8
[2026-01-14 15:43:20] Set ATHENA_CORE_NUMBER=8
[2026-01-14 15:43:20] Starting ATLAS job with PandaID=6969402958
[2026-01-14 15:43:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 18:45:09]  *** The last 200 lines of the pilot log: ***
[2026-01-14 18:45:09] 2026-01-14 17:43:57,242 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 18:45:09] 2026-01-14 17:43:57,243 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-14 18:45:09] 2026-01-14 17:43:57,245 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6969402958/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,246 | INFO     | extracted standard info from prmon json
[2026-01-14 18:45:09] 2026-01-14 17:43:57,246 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 18:45:09] 2026-01-14 17:43:57,246 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 18:45:09] 2026-01-14 17:43:57,246 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 18:45:09] 2026-01-14 17:43:57,247 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 18:45:09] 2026-01-14 17:43:57,250 | INFO     | fitting pss+swap vs Time
[2026-01-14 18:45:09] 2026-01-14 17:43:57,251 | INFO     | sum of square deviations: 1342841922.0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,255 | INFO     | sum of deviations: 92547379394.00002
[2026-01-14 18:45:09] 2026-01-14 17:43:57,255 | INFO     | mean x: 1768407529.0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,255 | INFO     | mean y: 2382476.2208588957
[2026-01-14 18:45:09] 2026-01-14 17:43:57,255 | INFO     | intersect: -121874571041.74438
[2026-01-14 18:45:09] 2026-01-14 17:43:57,256 | INFO     | chi2: 8.366053151671132
[2026-01-14 18:45:09] 2026-01-14 17:43:57,256 | INFO     | sum of square deviations: 1223016419.5
[2026-01-14 18:45:09] 2026-01-14 17:43:57,257 | INFO     | sum of deviations: 99951854725.5
[2026-01-14 18:45:09] 2026-01-14 17:43:57,257 | INFO     | mean x: 1768407376.5
[2026-01-14 18:45:09] 2026-01-14 17:43:57,257 | INFO     | mean y: 2391551.829113924
[2026-01-14 18:45:09] 2026-01-14 17:43:57,257 | INFO     | intersect: -144521912761.0212
[2026-01-14 18:45:09] 2026-01-14 17:43:57,258 | INFO     | chi2: 7.677236099289511
[2026-01-14 18:45:09] 2026-01-14 17:43:57,258 | INFO     | current chi2=7.677236099289511 (change=8.233476884425828 %)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,258 | INFO     | right removable region: 157
[2026-01-14 18:45:09] 2026-01-14 17:43:57,258 | INFO     | sum of square deviations: 1223016419.5
[2026-01-14 18:45:09] 2026-01-14 17:43:57,259 | INFO     | sum of deviations: 38373048295.499985
[2026-01-14 18:45:09] 2026-01-14 17:43:57,259 | INFO     | mean x: 1768407681.5
[2026-01-14 18:45:09] 2026-01-14 17:43:57,259 | INFO     | mean y: 2451361.525316456
[2026-01-14 18:45:09] 2026-01-14 17:43:57,259 | INFO     | intersect: -55482652751.856255
[2026-01-14 18:45:09] 2026-01-14 17:43:57,260 | INFO     | chi2: 3.437075325098371
[2026-01-14 18:45:09] 2026-01-14 17:43:57,260 | INFO     | current chi2=3.437075325098371 (change=58.91640582737858 %)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,260 | INFO     | sum of square deviations: 1110539892.0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,261 | INFO     | sum of deviations: -2238353276.0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,261 | INFO     | mean x: 1768407834.0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,261 | INFO     | mean y: 2506309.4836601308
[2026-01-14 18:45:09] 2026-01-14 17:43:57,261 | INFO     | intersect: 3566828038.9888654
[2026-01-14 18:45:09] 2026-01-14 17:43:57,261 | INFO     | chi2: 0.9270517843744511
[2026-01-14 18:45:09] 2026-01-14 17:43:57,261 | INFO     | current chi2=0.9270517843744511 (change=73.02788863529145 %)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,262 | INFO     | sum of square deviations: 1005179777.0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,262 | INFO     | sum of deviations: -7957072562.500003
[2026-01-14 18:45:09] 2026-01-14 17:43:57,263 | INFO     | mean x: 1768407986.5
[2026-01-14 18:45:09] 2026-01-14 17:43:57,263 | INFO     | mean y: 2514408.0337837837
[2026-01-14 18:45:09] 2026-01-14 17:43:57,263 | INFO     | intersect: 14001354208.294731
[2026-01-14 18:45:09] 2026-01-14 17:43:57,263 | INFO     | chi2: 0.8120592749635666
[2026-01-14 18:45:09] 2026-01-14 17:43:57,263 | INFO     | current chi2=0.8120592749635666 (change=12.404108524366665 %)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,263 | INFO     | left removable region: 30
[2026-01-14 18:45:09] 2026-01-14 17:43:57,263 | INFO     | sum of square deviations: 635130048.0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,264 | INFO     | sum of deviations: 2485413585.0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,264 | INFO     | mean x: 1768408261.0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,264 | INFO     | mean y: 2527783.2677165354
[2026-01-14 18:45:09] 2026-01-14 17:43:57,264 | INFO     | intersect: -6917670575.408625
[2026-01-14 18:45:09] 2026-01-14 17:43:57,264 | INFO     | chi2: 0.0003628307423474389
[2026-01-14 18:45:09] 2026-01-14 17:43:57,265 | INFO     | current memory leak: 3.91 B/s (using 127 data points, chi2=0.00)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,265 | INFO     | could have reported an average CPU frequency of 2249 MHz (9 samples)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,265 | INFO     | ..............................
[2026-01-14 18:45:09] 2026-01-14 17:43:57,265 | INFO     | . Timing measurements:
[2026-01-14 18:45:09] 2026-01-14 17:43:57,265 | INFO     | . get job = 0 s
[2026-01-14 18:45:09] 2026-01-14 17:43:57,265 | INFO     | . initial setup = 9 s
[2026-01-14 18:45:09] 2026-01-14 17:43:57,266 | INFO     | . payload setup = 147 s
[2026-01-14 18:45:09] 2026-01-14 17:43:57,266 | INFO     | . stage-in = 0 s
[2026-01-14 18:45:09] 2026-01-14 17:43:57,266 | INFO     | . payload execution = 10085 s
[2026-01-14 18:45:09] 2026-01-14 17:43:57,266 | INFO     | . stage-out = 3 s
[2026-01-14 18:45:09] 2026-01-14 17:43:57,266 | INFO     | . log creation = 1 s
[2026-01-14 18:45:09] 2026-01-14 17:43:57,266 | INFO     | ..............................
[2026-01-14 18:45:09] 2026-01-14 17:43:57,299 | INFO     | time since job start (10576s) is within the limit (349056.0s)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,375 | INFO     | 
[2026-01-14 18:45:09] 2026-01-14 17:43:57,375 | INFO     | job summary report
[2026-01-14 18:45:09] 2026-01-14 17:43:57,375 | INFO     | --------------------------------------------------
[2026-01-14 18:45:09] 2026-01-14 17:43:57,375 | INFO     | PanDA job id: 6969402958
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | task id: 48215263
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | errors: (none)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | pilot state: finished 
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | transexitcode: 0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | exeerrorcode: 0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | exeerrordiag: 
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | exitcode: 0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | exitmsg: OK
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | cpuconsumptiontime: 35980 s
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | nevents: 400
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | neventsw: 0
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | pid: 12858
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | pgrp: 12858
[2026-01-14 18:45:09] 2026-01-14 17:43:57,376 | INFO     | corecount: 8
[2026-01-14 18:45:09] 2026-01-14 17:43:57,377 | INFO     | event service: False
[2026-01-14 18:45:09] 2026-01-14 17:43:57,377 | INFO     | sizes: {0: 2283721, 1: 2283976, 12: 2283976, 23: 2284004, 34: 2284032, 44: 2284060, 55: 2284216, 66: 2284244, 76: 2284272, 87: 2284328, 98: 2284356, 109: 2284982, 
[2026-01-14 18:45:09] 2026-01-14 17:43:57,377 | INFO     | --------------------------------------------------
[2026-01-14 18:45:09] 2026-01-14 17:43:57,377 | INFO     | 
[2026-01-14 18:45:09] 2026-01-14 17:43:57,377 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-14 18:45:09] 2026-01-14 17:43:57,820 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,820 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,820 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,820 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,820 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,820 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,820 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,821 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 18:45:09] 2026-01-14 17:43:57,822 | INFO     | job 6969402958 has completed (purged errors)
[2026-01-14 18:45:09] 2026-01-14 17:43:57,822 | INFO     | overall cleanup function is called
[2026-01-14 18:45:09] 2026-01-14 17:43:58,830 | INFO     | --- collectZombieJob: --- 10, [12858]
[2026-01-14 18:45:09] 2026-01-14 17:43:58,831 | INFO     | zombie collector waiting for pid 12858
[2026-01-14 18:45:09] 2026-01-14 17:43:58,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 18:45:09] 2026-01-14 17:43:58,831 | INFO     | collected zombie processes
[2026-01-14 18:45:09] 2026-01-14 17:43:58,831 | INFO     | will attempt to kill all subprocesses of pid=12858
[2026-01-14 18:45:09] 2026-01-14 17:43:58,892 | INFO     | process IDs to be killed: [12858] (in reverse order)
[2026-01-14 18:45:09] 2026-01-14 17:43:59,885 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 18:45:09] 2026-01-14 17:43:59,885 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 18:45:09] 2026-01-14 17:43:59,887 | INFO     | did not find any defunct processes belonging to 12858
[2026-01-14 18:45:09] 2026-01-14 17:43:59,889 | INFO     | did not find any defunct processes belonging to 12858
[2026-01-14 18:45:09] 2026-01-14 17:43:59,889 | INFO     | ready for new job
[2026-01-14 18:45:09] 2026-01-14 17:43:59,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 18:45:09] 2026-01-14 17:43:59,891 | INFO     | ***************************************
[2026-01-14 18:45:09] 2026-01-14 17:43:59,891 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 18:45:09] 2026-01-14 17:43:59,891 | INFO     | ***************************************
[2026-01-14 18:45:09] 2026-01-14 17:43:59,891 | INFO     | 
[2026-01-14 18:45:09] 2026-01-14 17:43:59,891 | INFO     | pilot is running in a VM
[2026-01-14 18:45:09] 2026-01-14 17:43:59,892 | INFO     | architecture information:
[2026-01-14 18:45:09] 2026-01-14 17:43:59,911 | INFO     | executing command: cat /etc/os-release
[2026-01-14 18:45:09] 2026-01-14 17:44:00,185 | INFO     | cat /etc/os-release:
[2026-01-14 18:45:09] NAME="CentOS Linux"
[2026-01-14 18:45:09] VERSION="7 (Core)"
[2026-01-14 18:45:09] ID="centos"
[2026-01-14 18:45:09] ID_LIKE="rhel fedora"
[2026-01-14 18:45:09] VERSION_ID="7"
[2026-01-14 18:45:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 18:45:09] ANSI_COLOR="0;31"
[2026-01-14 18:45:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 18:45:09] HOME_URL="https://www.centos.org/"
[2026-01-14 18:45:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 18:45:09] 
[2026-01-14 18:45:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 18:45:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 18:45:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 18:45:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 18:45:09] 
[2026-01-14 18:45:09] 2026-01-14 17:44:00,186 | INFO     | ***************************************
[2026-01-14 18:45:09] 2026-01-14 17:44:00,690 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-14 18:45:09] 2026-01-14 17:44:00,905 | INFO     | sufficient remaining disk space (495955476480 B)
[2026-01-14 18:45:09] 2026-01-14 17:44:00,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 18:45:09] 2026-01-14 17:44:00,906 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 18:45:09] 2026-01-14 17:44:00,906 | INFO     | update_server=False
[2026-01-14 18:45:09] 2026-01-14 17:44:00,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 18:45:09] 2026-01-14 17:44:00,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 18:45:09] 2026-01-14 17:44:01,043 | INFO     | all data control threads have been joined
[2026-01-14 18:45:09] 2026-01-14 17:44:01,820 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 18:45:09] 2026-01-14 17:44:01,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 18:45:09] 2026-01-14 17:44:01,830 | INFO     | aborting loop
[2026-01-14 18:45:09] 2026-01-14 17:44:01,912 | INFO     | [job] retrieve thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:02,049 | INFO     | [data] control thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:02,139 | INFO     | all job control threads have been joined
[2026-01-14 18:45:09] 2026-01-14 17:44:02,167 | INFO     | [job] validate thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:02,229 | INFO     | [payload] failed_post thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:02,294 | INFO     | all payload control threads have been joined
[2026-01-14 18:45:09] 2026-01-14 17:44:02,396 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 18:45:09] 2026-01-14 17:44:02,554 | INFO     | [data] copytool_in thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:02,747 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:02,836 | INFO     | [job] job monitor thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:02,924 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:03,142 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:03,145 | INFO     | [job] control thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:03,219 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:03,251 | INFO     | [payload] validate_post thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:03,300 | INFO     | [payload] control thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:03,402 | INFO     | [job] queue monitor thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:03,827 | INFO     | [data] copytool_out thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:04,916 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 18:45:09] 2026-01-14 17:44:30,407 | INFO     | PID=6380 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-14 18:45:09] 2026-01-14 17:44:30,407 | INFO     | .. there are 2 such processes running
[2026-01-14 18:45:09] 2026-01-14 17:44:30,408 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 18:45:09] 2026-01-14 17:44:30,408 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 18:45:09] 2026-01-14 17:44:30,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 18:45:09] 2026-01-14 17:44:58,668 | INFO     | [monitor] cgroup control has ended
[2026-01-14 18:45:09] 2026-01-14 17:44:58,943 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140307720533824)>', '<ExcThread(monitor, started 140307404396288)>']
[2026-01-14 18:45:09] 2026-01-14 17:44:59,580 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 18:45:09] 2026-01-14 17:44:59,581 | INFO     | [monitor] control thread has ended
[2026-01-14 18:45:09] 2026-01-14 17:45:03,969 | INFO     | all workflow threads have been joined
[2026-01-14 18:45:09] 2026-01-14 17:45:03,970 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 18:45:09] 2026-01-14 17:45:03,970 | INFO     | traces error code: 0
[2026-01-14 18:45:09] 2026-01-14 17:45:03,970 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 18:45:09] 2026-01-14 17:45:04,263 [wrapper] ==== pilot stdout END ====
[2026-01-14 18:45:09] 2026-01-14 17:45:04,360 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 18:45:09] 2026-01-14 17:45:04,459 [wrapper] pilotpid: 6380
[2026-01-14 18:45:09] 2026-01-14 17:45:04,573 [wrapper] Pilot exit status: 0
[2026-01-14 18:45:09] 2026-01-14 17:45:05,075 [wrapper] pandaids: 6969402958
[2026-01-14 18:45:09] 2026-01-14 17:45:06,132 [wrapper] cleanup supervisor_pilot 31121 6381
[2026-01-14 18:45:09] 2026-01-14 17:45:06,250 [wrapper] Test setup, not cleaning
[2026-01-14 18:45:09] 2026-01-14 17:45:06,307 [wrapper] apfmon messages muted
[2026-01-14 18:45:09] 2026-01-14 17:45:06,405 [wrapper] ==== wrapper stdout END ====
[2026-01-14 18:45:09] 2026-01-14 17:45:06,532 [wrapper] ==== wrapper stderr END ====
[2026-01-14 18:45:09]  *** Error codes and diagnostics ***
[2026-01-14 18:45:09]     "exeErrorCode": 0,
[2026-01-14 18:45:09]     "exeErrorDiag": "",
[2026-01-14 18:45:09]     "pilotErrorCode": 0,
[2026-01-14 18:45:09]     "pilotErrorDiag": "",
[2026-01-14 18:45:09]  *** Listing of results directory ***
[2026-01-14 18:45:09] total 738776
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc    579449 Jan 14 08:33 pilot3.tar.gz
[2026-01-14 18:45:09] -rwx------. 1 boinc boinc     36322 Jan 14 08:34 runpilot2-wrapper.sh
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc      5112 Jan 14 08:34 queuedata.json
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc       100 Jan 14 15:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 18:45:09] -rwxr-xr-x. 1 boinc boinc      7986 Jan 14 15:43 run_atlas
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc       105 Jan 14 15:43 job.xml
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc      6391 Jan 14 15:43 init_data.xml
[2026-01-14 18:45:09] -rw-r--r--. 2 boinc boinc 594266028 Jan 14 15:43 EVNT.32794306._000708.pool.root.1
[2026-01-14 18:45:09] -rw-r--r--. 2 boinc boinc     15847 Jan 14 15:43 start_atlas.sh
[2026-01-14 18:45:09] drwxrwx--x. 2 boinc boinc        68 Jan 14 15:43 shared
[2026-01-14 18:45:09] -rw-r--r--. 2 boinc boinc    592405 Jan 14 15:43 input.tar.gz
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc         0 Jan 14 15:43 boinc_lockfile
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc      2506 Jan 14 15:43 pandaJob.out
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc    997566 Jan 14 15:47 agis_schedconf.cvmfs.json
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc   1516246 Jan 14 15:47 agis_ddmendpoints.agis.ALL.json
[2026-01-14 18:45:09] drwx------. 5 boinc boinc      4096 Jan 14 15:47 pilot3
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc 154684700 Jan 14 18:40 HITS.48215263._017665.pool.root.1
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc       531 Jan 14 18:40 boinc_task_state.xml
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc      1017 Jan 14 18:41 memory_monitor_summary.json
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc    403099 Jan 14 18:42 log.48215263._017665.job.log.tgz.1
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc        95 Jan 14 18:43 pilot_heartbeat.json
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc      7779 Jan 14 18:43 heartbeat.json
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc      4883 Jan 14 18:45 pilotlog.txt
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc   1421627 Jan 14 18:45 log.48215263._017665.job.log.1
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc        28 Jan 14 18:45 wrapper_checkpoint.txt
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc      8192 Jan 14 18:45 boinc_mmap_file
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc       357 Jan 14 18:45 output.list
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc       620 Jan 14 18:45 runtime_log
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc   1843200 Jan 14 18:45 result.tar.gz
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc       655 Jan 14 18:45 xS9LDmOZA08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmibqKDmM8f5Lm.diag
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc      8817 Jan 14 18:45 runtime_log.err
[2026-01-14 18:45:09] -rw-r--r--. 1 boinc boinc     20760 Jan 14 18:45 stderr.txt
[2026-01-14 18:45:09] HITS file was successfully produced:
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc 154684700 Jan 14 18:40 shared/HITS.pool.root.1
[2026-01-14 18:45:09]  *** Contents of shared directory: ***
[2026-01-14 18:45:09] total 733796
[2026-01-14 18:45:09] -rw-r--r--. 2 boinc boinc 594266028 Jan 14 15:43 ATLAS.root_0
[2026-01-14 18:45:09] -rw-r--r--. 2 boinc boinc     15847 Jan 14 15:43 start_atlas.sh
[2026-01-14 18:45:09] -rw-r--r--. 2 boinc boinc    592405 Jan 14 15:43 input.tar.gz
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc 154684700 Jan 14 18:40 HITS.pool.root.1
[2026-01-14 18:45:09] -rw-------. 1 boinc boinc   1843200 Jan 14 18:45 result.tar.gz
18:45:11 (2657): run_atlas exited; CPU time 36083.770417
18:45:11 (2657): called boinc_finish(0)

</stderr_txt>
]]>

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