Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:30:13 (1396644): wrapper (7.7.26015): starting
14:30:13 (1396644): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 14:30:13] Arguments: --nthreads 3
[2026-01-14 14:30:13] Threads: 3
[2026-01-14 14:30:13] Checking for CVMFS
[2026-01-14 14:30:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 14:30:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 14:30:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 14:30:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 14:30:14] 2.9.2.0 1053361 833 77788 155133 0 57 22727855 36864001 0 130560 0 903523 99.992 33068 25146 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 14:30:14] CVMFS is ok
[2026-01-14 14:30:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 14:30:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 14:30:14] Further information can be found at the LHC@home message board.
[2026-01-14 14:30:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 14:30:14] Checking for apptainer binary...
[2026-01-14 14:30:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 14:30:14] Running /usr/bin/apptainer --version
[2026-01-14 14:30:14] apptainer version 1.4.1-1.1
[2026-01-14 14:30:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 14:30:14] magicA246a
[2026-01-14 14:30:14] apptainer works
[2026-01-14 14:30:14] Set ATHENA_PROC_NUMBER=3
[2026-01-14 14:30:14] Set ATHENA_CORE_NUMBER=3
[2026-01-14 14:30:14] Starting ATLAS job with PandaID=6969362734
[2026-01-14 14:30:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 15:28:35]  *** The last 200 lines of the pilot log: ***
[2026-01-14 15:28:35] 2026-01-14 14:28:04,053 | INFO     | --- collectZombieJob: --- 10, [1406807]
[2026-01-14 15:28:35] 2026-01-14 14:28:04,053 | INFO     | zombie collector waiting for pid 1406807
[2026-01-14 15:28:35] 2026-01-14 14:28:04,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 15:28:35] 2026-01-14 14:28:04,053 | INFO     | collected zombie processes
[2026-01-14 15:28:35] 2026-01-14 14:28:04,053 | INFO     | will attempt to kill all subprocesses of pid=1406807
[2026-01-14 15:28:35] 2026-01-14 14:28:04,111 | INFO     | process IDs to be killed: [1406807] (in reverse order)
[2026-01-14 15:28:35] 2026-01-14 14:28:04,139 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 15:28:35] 2026-01-14 14:28:04,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 15:28:35] 2026-01-14 14:28:04,141 | INFO     | did not find any defunct processes belonging to 1406807
[2026-01-14 15:28:35] 2026-01-14 14:28:04,143 | INFO     | did not find any defunct processes belonging to 1406807
[2026-01-14 15:28:35] 2026-01-14 14:28:04,143 | INFO     | ready for new job
[2026-01-14 15:28:35] 2026-01-14 14:28:04,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 15:28:35] 2026-01-14 14:28:04,144 | INFO     | ***************************************
[2026-01-14 15:28:35] 2026-01-14 14:28:04,144 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 15:28:35] 2026-01-14 14:28:04,144 | INFO     | ***************************************
[2026-01-14 15:28:35] 2026-01-14 14:28:04,144 | INFO     | 
[2026-01-14 15:28:35] 2026-01-14 14:28:04,144 | INFO     | architecture information:
[2026-01-14 15:28:35] 2026-01-14 14:28:04,144 | INFO     | executing command: cat /etc/os-release
[2026-01-14 15:28:35] 2026-01-14 14:28:04,153 | INFO     | cat /etc/os-release:
[2026-01-14 15:28:35] NAME="CentOS Linux"
[2026-01-14 15:28:35] VERSION="7 (Core)"
[2026-01-14 15:28:35] ID="centos"
[2026-01-14 15:28:35] ID_LIKE="rhel fedora"
[2026-01-14 15:28:35] VERSION_ID="7"
[2026-01-14 15:28:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 15:28:35] ANSI_COLOR="0;31"
[2026-01-14 15:28:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 15:28:35] HOME_URL="https://www.centos.org/"
[2026-01-14 15:28:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 15:28:35] 
[2026-01-14 15:28:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 15:28:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 15:28:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 15:28:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 15:28:35] 
[2026-01-14 15:28:35] 2026-01-14 14:28:04,153 | INFO     | ***************************************
[2026-01-14 15:28:35] 2026-01-14 14:28:04,656 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 15:28:35] 2026-01-14 14:28:04,669 | INFO     | sufficient remaining disk space (281033048064 B)
[2026-01-14 15:28:35] 2026-01-14 14:28:04,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 15:28:35] 2026-01-14 14:28:04,669 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 15:28:35] 2026-01-14 14:28:04,669 | INFO     | update_server=False
[2026-01-14 15:28:35] 2026-01-14 14:28:04,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 15:28:35] 2026-01-14 14:28:04,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:28:35] 2026-01-14 14:28:04,821 | INFO     | aborting loop
[2026-01-14 15:28:35] 2026-01-14 14:28:04,969 | INFO     | all payload control threads have been joined
[2026-01-14 15:28:35] 2026-01-14 14:28:05,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 15:28:35] 2026-01-14 14:28:05,331 | INFO     | all job control threads have been joined
[2026-01-14 15:28:35] 2026-01-14 14:28:05,522 | INFO     | all data control threads have been joined
[2026-01-14 15:28:35] 2026-01-14 14:28:05,674 | INFO     | [job] retrieve thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:05,712 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:05,826 | INFO     | [job] job monitor thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:05,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 15:28:35] 2026-01-14 14:28:05,975 | INFO     | [payload] control thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:05,978 | INFO     | [payload] failed_post thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:06,336 | INFO     | [job] control thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:06,503 | INFO     | [payload] validate_post thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:06,527 | INFO     | [data] control thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:06,660 | INFO     | [data] copytool_in thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:07,015 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:07,134 | INFO     | [data] copytool_out thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:07,137 | INFO     | [job] validate thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:07,168 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:07,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:28:35] 2026-01-14 14:28:08,679 | INFO     | [job] queue monitor thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:09,946 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:15,619 | INFO     | job.realtimelogging is not enabled
[2026-01-14 15:28:35] 2026-01-14 14:28:16,624 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 15:28:35] 2026-01-14 14:28:23,327 | INFO     | [monitor] cgroup control has ended
[2026-01-14 15:28:35] 2026-01-14 14:28:24,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472971368256)>', '<ExcThread(monitor, started 140472697722624)>']
[2026-01-14 15:28:35] 2026-01-14 14:28:29,695 | INFO     | all workflow threads have been joined
[2026-01-14 15:28:35] 2026-01-14 14:28:29,695 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 15:28:35] 2026-01-14 14:28:29,696 | INFO     | traces error code: 0
[2026-01-14 15:28:35] 2026-01-14 14:28:29,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 15:28:35] 2026-01-14 14:28:35,246 | INFO     | PID=1400362 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 15:28:35] 2026-01-14 14:28:35,246 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 15:28:35] 2026-01-14 14:28:35,246 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 15:28:35] 2026-01-14 14:28:35,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 15:28:35] 2026-01-14 14:28:35,246 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 15:28:35] 2026-01-14 14:28:35,246 | INFO     | [monitor] control thread has ended
[2026-01-14 15:28:35] 2026-01-14 14:28:35,295 [wrapper] ==== pilot stdout END ====
[2026-01-14 15:28:35] 2026-01-14 14:28:35,298 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 15:28:35] 2026-01-14 14:28:35,300 [wrapper] pilotpid: 1400362
[2026-01-14 15:28:35] 2026-01-14 14:28:35,303 [wrapper] Pilot exit status: 0
[2026-01-14 15:28:35] 2026-01-14 14:28:35,310 [wrapper] pandaids: 6969362734
[2026-01-14 15:28:35] 2026-01-14 14:28:35,329 [wrapper] cleanup supervisor_pilot 1416970 1400363
[2026-01-14 15:28:35] 2026-01-14 14:28:35,332 [wrapper] Test setup, not cleaning
[2026-01-14 15:28:35] 2026-01-14 14:28:35,334 [wrapper] apfmon messages muted
[2026-01-14 15:28:35] 2026-01-14 14:28:35,337 [wrapper] ==== wrapper stdout END ====
[2026-01-14 15:28:35] 2026-01-14 14:28:35,339 [wrapper] ==== wrapper stderr END ====
[2026-01-14 15:28:35]  *** Error codes and diagnostics ***
[2026-01-14 15:28:35]     "exeErrorCode": 0,
[2026-01-14 15:28:35]     "exeErrorDiag": "",
[2026-01-14 15:28:35]     "pilotErrorCode": 0,
[2026-01-14 15:28:35]     "pilotErrorDiag": "",
[2026-01-14 15:28:35]  *** Listing of results directory ***
[2026-01-14 15:28:35] total 752168
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc      5112 Jan 14 08:33 queuedata.json
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc    579449 Jan 14 08:33 pilot3.tar.gz
[2026-01-14 15:28:35] -rwx------ 1 boinc boinc     36322 Jan 14 08:33 runpilot2-wrapper.sh
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc       100 Jan 14 14:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 15:28:35] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 14:30 run_atlas
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc       105 Jan 14 14:30 job.xml
[2026-01-14 15:28:35] -rw-r--r-- 2 boinc boinc 602649029 Jan 14 14:30 EVNT.32794306._000685.pool.root.1
[2026-01-14 15:28:35] -rw-r--r-- 2 boinc boinc    592396 Jan 14 14:30 input.tar.gz
[2026-01-14 15:28:35] -rw-r--r-- 2 boinc boinc     15847 Jan 14 14:30 start_atlas.sh
[2026-01-14 15:28:35] drwxrwx--x 2 boinc boinc      4096 Jan 14 14:30 shared
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc         0 Jan 14 14:30 boinc_setup_complete
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc      6447 Jan 14 14:30 init_data.xml
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc         0 Jan 14 14:30 boinc_lockfile
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc      2507 Jan 14 14:30 pandaJob.out
[2026-01-14 15:28:35] -rw------- 1 boinc boinc    997566 Jan 14 14:30 agis_schedconf.cvmfs.json
[2026-01-14 15:28:35] -rw------- 1 boinc boinc   1516246 Jan 14 14:30 agis_ddmendpoints.agis.ALL.json
[2026-01-14 15:28:35] drwx------ 5 boinc boinc      4096 Jan 14 14:30 pilot3
[2026-01-14 15:28:35] -rw------- 1 boinc boinc 162166860 Jan 14 15:27 HITS.48215263._017104.pool.root.1
[2026-01-14 15:28:35] -rw------- 1 boinc boinc        95 Jan 14 15:27 pilot_heartbeat.json
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc       529 Jan 14 15:27 boinc_task_state.xml
[2026-01-14 15:28:35] -rw------- 1 boinc boinc      1009 Jan 14 15:27 memory_monitor_summary.json
[2026-01-14 15:28:35] -rw------- 1 boinc boinc    222032 Jan 14 15:27 log.48215263._017104.job.log.tgz.1
[2026-01-14 15:28:35] -rw------- 1 boinc boinc      7744 Jan 14 15:28 heartbeat.json
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc      8192 Jan 14 15:28 boinc_mmap_file
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc        26 Jan 14 15:28 wrapper_checkpoint.txt
[2026-01-14 15:28:35] -rw------- 1 boinc boinc       747 Jan 14 15:28 pilotlog.txt
[2026-01-14 15:28:35] -rw------- 1 boinc boinc    524249 Jan 14 15:28 log.48215263._017104.job.log.1
[2026-01-14 15:28:35] -rw------- 1 boinc boinc       357 Jan 14 15:28 output.list
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc       620 Jan 14 15:28 runtime_log
[2026-01-14 15:28:35] -rw------- 1 boinc boinc    768000 Jan 14 15:28 result.tar.gz
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc      8917 Jan 14 15:28 runtime_log.err
[2026-01-14 15:28:35] -rw------- 1 boinc boinc       660 Jan 14 15:28 7iNKDmcYA08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQIkKDmyRb7cn.diag
[2026-01-14 15:28:35] -rw-r--r-- 1 boinc boinc     10710 Jan 14 15:28 stderr.txt
[2026-01-14 15:28:35] HITS file was successfully produced:
[2026-01-14 15:28:35] -rw------- 1 boinc boinc 162166860 Jan 14 15:27 shared/HITS.pool.root.1
[2026-01-14 15:28:35]  *** Contents of shared directory: ***
[2026-01-14 15:28:35] total 748252
[2026-01-14 15:28:35] -rw-r--r-- 2 boinc boinc 602649029 Jan 14 14:30 ATLAS.root_0
[2026-01-14 15:28:35] -rw-r--r-- 2 boinc boinc    592396 Jan 14 14:30 input.tar.gz
[2026-01-14 15:28:35] -rw-r--r-- 2 boinc boinc     15847 Jan 14 14:30 start_atlas.sh
[2026-01-14 15:28:35] -rw------- 1 boinc boinc 162166860 Jan 14 15:27 HITS.pool.root.1
[2026-01-14 15:28:35] -rw------- 1 boinc boinc    768000 Jan 14 15:28 result.tar.gz
15:28:36 (1396644): run_atlas exited; CPU time 9767.946455
15:28:36 (1396644): called boinc_finish(0)

</stderr_txt>
]]>

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