Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:33:35 (1372998): wrapper (7.7.26015): starting
13:33:35 (1372998): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 13:33:35] Arguments: --nthreads 3
[2026-01-14 13:33:35] Threads: 3
[2026-01-14 13:33:35] Checking for CVMFS
[2026-01-14 13:33:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 13:33:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 13:33:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 13:33:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 13:33:35] 2.9.2.0 1053361 776 76948 155132 0 57 22719760 36864001 0 130560 0 843266 99.992 31724 25522 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 13:33:35] CVMFS is ok
[2026-01-14 13:33:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 13:33:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 13:33:35] Further information can be found at the LHC@home message board.
[2026-01-14 13:33:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 13:33:35] Checking for apptainer binary...
[2026-01-14 13:33:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 13:33:35] Running /usr/bin/apptainer --version
[2026-01-14 13:33:35] apptainer version 1.4.1-1.1
[2026-01-14 13:33:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 13:33:35] magicA246a
[2026-01-14 13:33:35] apptainer works
[2026-01-14 13:33:35] Set ATHENA_PROC_NUMBER=3
[2026-01-14 13:33:35] Set ATHENA_CORE_NUMBER=3
[2026-01-14 13:33:35] Starting ATLAS job with PandaID=6969362696
[2026-01-14 13:33:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 14:29:49]  *** The last 200 lines of the pilot log: ***
[2026-01-14 14:29:49] 2026-01-14 13:29:12,350 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 14:29:49] 2026-01-14 13:29:12,350 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 14:29:49] 2026-01-14 13:29:12,350 | INFO     | job 6969362696 has completed (purged errors)
[2026-01-14 14:29:49] 2026-01-14 13:29:12,350 | INFO     | overall cleanup function is called
[2026-01-14 14:29:49] 2026-01-14 13:29:13,357 | INFO     | --- collectZombieJob: --- 10, [1383168]
[2026-01-14 14:29:49] 2026-01-14 13:29:13,357 | INFO     | zombie collector waiting for pid 1383168
[2026-01-14 14:29:49] 2026-01-14 13:29:13,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 14:29:49] 2026-01-14 13:29:13,357 | INFO     | collected zombie processes
[2026-01-14 14:29:49] 2026-01-14 13:29:13,357 | INFO     | will attempt to kill all subprocesses of pid=1383168
[2026-01-14 14:29:49] 2026-01-14 13:29:13,416 | INFO     | process IDs to be killed: [1383168] (in reverse order)
[2026-01-14 14:29:49] 2026-01-14 13:29:13,446 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 14:29:49] 2026-01-14 13:29:13,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 14:29:49] 2026-01-14 13:29:13,449 | INFO     | did not find any defunct processes belonging to 1383168
[2026-01-14 14:29:49] 2026-01-14 13:29:13,450 | INFO     | did not find any defunct processes belonging to 1383168
[2026-01-14 14:29:49] 2026-01-14 13:29:13,450 | INFO     | ready for new job
[2026-01-14 14:29:49] 2026-01-14 13:29:13,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 14:29:49] 2026-01-14 13:29:13,451 | INFO     | ***************************************
[2026-01-14 14:29:49] 2026-01-14 13:29:13,451 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 14:29:49] 2026-01-14 13:29:13,451 | INFO     | ***************************************
[2026-01-14 14:29:49] 2026-01-14 13:29:13,451 | INFO     | 
[2026-01-14 14:29:49] 2026-01-14 13:29:13,451 | INFO     | architecture information:
[2026-01-14 14:29:49] 2026-01-14 13:29:13,451 | INFO     | executing command: cat /etc/os-release
[2026-01-14 14:29:49] 2026-01-14 13:29:13,460 | INFO     | cat /etc/os-release:
[2026-01-14 14:29:49] NAME="CentOS Linux"
[2026-01-14 14:29:49] VERSION="7 (Core)"
[2026-01-14 14:29:49] ID="centos"
[2026-01-14 14:29:49] ID_LIKE="rhel fedora"
[2026-01-14 14:29:49] VERSION_ID="7"
[2026-01-14 14:29:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 14:29:49] ANSI_COLOR="0;31"
[2026-01-14 14:29:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 14:29:49] HOME_URL="https://www.centos.org/"
[2026-01-14 14:29:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 14:29:49] 
[2026-01-14 14:29:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 14:29:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 14:29:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 14:29:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 14:29:49] 
[2026-01-14 14:29:49] 2026-01-14 13:29:13,461 | INFO     | ***************************************
[2026-01-14 14:29:49] 2026-01-14 13:29:13,964 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 14:29:49] 2026-01-14 13:29:13,975 | INFO     | sufficient remaining disk space (281055068160 B)
[2026-01-14 14:29:49] 2026-01-14 13:29:13,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 14:29:49] 2026-01-14 13:29:13,976 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 14:29:49] 2026-01-14 13:29:13,976 | INFO     | update_server=False
[2026-01-14 14:29:49] 2026-01-14 13:29:13,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 14:29:49] 2026-01-14 13:29:13,976 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 14:29:49] 2026-01-14 13:29:13,989 | INFO     | all payload control threads have been joined
[2026-01-14 14:29:49] 2026-01-14 13:29:13,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 14:29:49] 2026-01-14 13:29:14,446 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-14 14:29:49] 2026-01-14 13:29:14,447 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 14:29:49] 2026-01-14 13:29:14,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 14:29:49] 2026-01-14 13:29:14,447 | INFO     | will abort loop
[2026-01-14 14:29:49] 2026-01-14 13:29:14,512 | INFO     | all data control threads have been joined
[2026-01-14 14:29:49] 2026-01-14 13:29:14,982 | INFO     | [job] retrieve thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:14,982 | INFO     | [job] queue monitor thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:14,990 | INFO     | [payload] validate_post thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:14,995 | INFO     | [payload] control thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:15,029 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:15,405 | INFO     | all job control threads have been joined
[2026-01-14 14:29:49] 2026-01-14 13:29:15,452 | INFO     | [job] job monitor thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:15,517 | INFO     | [data] control thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:15,604 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:15,973 | INFO     | [data] copytool_in thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:15,998 | INFO     | [data] copytool_out thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:16,065 | INFO     | [payload] failed_post thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:16,390 | INFO     | [job] validate thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:16,411 | INFO     | [job] control thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:16,452 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:16,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 14:29:49] 2026-01-14 13:29:20,883 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:24,940 | INFO     | job.realtimelogging is not enabled
[2026-01-14 14:29:49] 2026-01-14 13:29:25,946 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 14:29:49] 2026-01-14 13:29:44,178 | INFO     | PID=1376722 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 14:29:49] 2026-01-14 13:29:44,178 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 14:29:49] 2026-01-14 13:29:44,178 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 14:29:49] 2026-01-14 13:29:44,178 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 14:29:49] 2026-01-14 13:29:44,434 | INFO     | [monitor] cgroup control has ended
[2026-01-14 14:29:49] 2026-01-14 13:29:44,447 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139883980625728)>', '<ExcThread(monitor, started 139883049903872)>']
[2026-01-14 14:29:49] 2026-01-14 13:29:45,183 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 14:29:49] 2026-01-14 13:29:45,183 | INFO     | [monitor] control thread has ended
[2026-01-14 14:29:49] 2026-01-14 13:29:49,455 | INFO     | all workflow threads have been joined
[2026-01-14 14:29:49] 2026-01-14 13:29:49,455 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 14:29:49] 2026-01-14 13:29:49,455 | INFO     | traces error code: 0
[2026-01-14 14:29:49] 2026-01-14 13:29:49,455 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 14:29:49] 2026-01-14 13:29:49,508 [wrapper] ==== pilot stdout END ====
[2026-01-14 14:29:49] 2026-01-14 13:29:49,511 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 14:29:49] 2026-01-14 13:29:49,513 [wrapper] pilotpid: 1376722
[2026-01-14 14:29:49] 2026-01-14 13:29:49,515 [wrapper] Pilot exit status: 0
[2026-01-14 14:29:49] 2026-01-14 13:29:49,522 [wrapper] pandaids: 6969362696
[2026-01-14 14:29:49] 2026-01-14 13:29:49,541 [wrapper] cleanup supervisor_pilot 1393772 1376723
[2026-01-14 14:29:49] 2026-01-14 13:29:49,544 [wrapper] Test setup, not cleaning
[2026-01-14 14:29:49] 2026-01-14 13:29:49,546 [wrapper] apfmon messages muted
[2026-01-14 14:29:49] 2026-01-14 13:29:49,549 [wrapper] ==== wrapper stdout END ====
[2026-01-14 14:29:49] 2026-01-14 13:29:49,551 [wrapper] ==== wrapper stderr END ====
[2026-01-14 14:29:49]  *** Error codes and diagnostics ***
[2026-01-14 14:29:49]     "exeErrorCode": 0,
[2026-01-14 14:29:49]     "exeErrorDiag": "",
[2026-01-14 14:29:49]     "pilotErrorCode": 0,
[2026-01-14 14:29:49]     "pilotErrorDiag": "",
[2026-01-14 14:29:49]  *** Listing of results directory ***
[2026-01-14 14:29:49] total 738740
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc      5112 Jan 14 08:33 queuedata.json
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc    579449 Jan 14 08:33 pilot3.tar.gz
[2026-01-14 14:29:49] -rwx------ 1 boinc boinc     36322 Jan 14 08:33 runpilot2-wrapper.sh
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc       100 Jan 14 13:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 14:29:49] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 13:33 run_atlas
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc       105 Jan 14 13:33 job.xml
[2026-01-14 14:29:49] -rw-r--r-- 2 boinc boinc 597791621 Jan 14 13:33 EVNT.32794306._000683.pool.root.1
[2026-01-14 14:29:49] drwxrwx--x 2 boinc boinc      4096 Jan 14 13:33 shared
[2026-01-14 14:29:49] -rw-r--r-- 2 boinc boinc    592398 Jan 14 13:33 input.tar.gz
[2026-01-14 14:29:49] -rw-r--r-- 2 boinc boinc     15847 Jan 14 13:33 start_atlas.sh
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc         0 Jan 14 13:33 boinc_setup_complete
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc      6447 Jan 14 13:33 init_data.xml
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc         0 Jan 14 13:33 boinc_lockfile
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc      2507 Jan 14 13:33 pandaJob.out
[2026-01-14 14:29:49] -rw------- 1 boinc boinc    997566 Jan 14 13:33 agis_schedconf.cvmfs.json
[2026-01-14 14:29:49] -rw------- 1 boinc boinc   1516246 Jan 14 13:33 agis_ddmendpoints.agis.ALL.json
[2026-01-14 14:29:49] drwx------ 5 boinc boinc      4096 Jan 14 13:33 pilot3
[2026-01-14 14:29:49] -rw------- 1 boinc boinc 153288659 Jan 14 14:28 HITS.48215263._017066.pool.root.1
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc       529 Jan 14 14:28 boinc_task_state.xml
[2026-01-14 14:29:49] -rw------- 1 boinc boinc      1018 Jan 14 14:28 memory_monitor_summary.json
[2026-01-14 14:29:49] -rw------- 1 boinc boinc        95 Jan 14 14:29 pilot_heartbeat.json
[2026-01-14 14:29:49] -rw------- 1 boinc boinc    234480 Jan 14 14:29 log.48215263._017066.job.log.tgz.1
[2026-01-14 14:29:49] -rw------- 1 boinc boinc      7754 Jan 14 14:29 heartbeat.json
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc      8192 Jan 14 14:29 boinc_mmap_file
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc        26 Jan 14 14:29 wrapper_checkpoint.txt
[2026-01-14 14:29:49] -rw------- 1 boinc boinc      5010 Jan 14 14:29 pilotlog.txt
[2026-01-14 14:29:49] -rw------- 1 boinc boinc    507451 Jan 14 14:29 log.48215263._017066.job.log.1
[2026-01-14 14:29:49] -rw------- 1 boinc boinc       357 Jan 14 14:29 output.list
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc       620 Jan 14 14:29 runtime_log
[2026-01-14 14:29:49] -rw------- 1 boinc boinc    757760 Jan 14 14:29 result.tar.gz
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc      8917 Jan 14 14:29 runtime_log.err
[2026-01-14 14:29:49] -rw------- 1 boinc boinc       660 Jan 14 14:29 DqiNDmbYA08n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1HkKDmvmG7Zm.diag
[2026-01-14 14:29:49] -rw-r--r-- 1 boinc boinc     11342 Jan 14 14:29 stderr.txt
[2026-01-14 14:29:49] HITS file was successfully produced:
[2026-01-14 14:29:49] -rw------- 1 boinc boinc 153288659 Jan 14 14:28 shared/HITS.pool.root.1
[2026-01-14 14:29:49]  *** Contents of shared directory: ***
[2026-01-14 14:29:49] total 734824
[2026-01-14 14:29:49] -rw-r--r-- 2 boinc boinc 597791621 Jan 14 13:33 ATLAS.root_0
[2026-01-14 14:29:49] -rw-r--r-- 2 boinc boinc    592398 Jan 14 13:33 input.tar.gz
[2026-01-14 14:29:49] -rw-r--r-- 2 boinc boinc     15847 Jan 14 13:33 start_atlas.sh
[2026-01-14 14:29:49] -rw------- 1 boinc boinc 153288659 Jan 14 14:28 HITS.pool.root.1
[2026-01-14 14:29:49] -rw------- 1 boinc boinc    757760 Jan 14 14:29 result.tar.gz
14:29:51 (1372998): run_atlas exited; CPU time 9389.009295
14:29:51 (1372998): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN