Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:29:08 (19071): wrapper (7.7.26015): starting
03:29:08 (19071): wrapper: running run_atlas (--nthreads 8)
[2026-01-14 03:29:08] Arguments: --nthreads 8
[2026-01-14 03:29:08] Threads: 8
[2026-01-14 03:29:08] Checking for CVMFS
[2026-01-14 03:29:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 03:29:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 03:29:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 03:29:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 03:29:09] 2.11.2.0 2856 215040 82652 155124 2 56 12543515 20275200 1 130560 0 70684654 99.913 10523087 34192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-14 03:29:09] CVMFS is ok
[2026-01-14 03:29:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 03:29:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 03:29:09] Further information can be found at the LHC@home message board.
[2026-01-14 03:29:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 03:29:09] Checking for apptainer binary...
[2026-01-14 03:29:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 03:29:09] Running /usr/bin/apptainer --version
[2026-01-14 03:29:09] apptainer version 1.3.2-1.el7
[2026-01-14 03:29:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 03:29:11] c-115-6.aglt2.org
[2026-01-14 03:29:11] apptainer works
[2026-01-14 03:29:11] Set ATHENA_PROC_NUMBER=8
[2026-01-14 03:29:11] Set ATHENA_CORE_NUMBER=8
[2026-01-14 03:29:11] Starting ATLAS job with PandaID=6969265735
[2026-01-14 03:29:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 04:42:42]  *** The last 200 lines of the pilot log: ***
[2026-01-14 04:42:42]  lfn=log.48215263._004759.job.log.tgz.1
[2026-01-14 04:42:42]  mtime=0
[2026-01-14 04:42:42]  protocol_id=None
[2026-01-14 04:42:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-14 04:42:42]  replicas=None
[2026-01-14 04:42:42]  scope=mc23_13p6TeV
[2026-01-14 04:42:42]  status=None
[2026-01-14 04:42:42]  status_code=0
[2026-01-14 04:42:42]  storage_token=
[2026-01-14 04:42:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969265735/log.48215263._004759.job.log.tgz.1
[2026-01-14 04:42:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/c3/log.48215263._004759.job.log.tgz.1
[2026-01-14 04:42:42]  workdir=None
[2026-01-14 04:42:42] ]
[2026-01-14 04:42:42] 2026-01-14 09:41:45,595 | INFO     | transferring file log.48215263._004759.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969265735/log.48215263._004759.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-14 04:42:42] 2026-01-14 09:41:45,596 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969265735/log.48215263._004759.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._004759.job
[2026-01-14 04:42:42] 2026-01-14 09:41:45,620 | INFO     | adding to output.list: log.48215263._004759.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/c3/log.48215263._004759.job.log.tg
[2026-01-14 04:42:42] 2026-01-14 09:41:45,621 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 04:42:42] 2026-01-14 09:41:45,622 | INFO     | summary of transferred files:
[2026-01-14 04:42:42] 2026-01-14 09:41:45,622 | INFO     |  -- lfn=log.48215263._004759.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 04:42:42] 2026-01-14 09:41:45,622 | INFO     | stage-out finished correctly
[2026-01-14 04:42:42] 2026-01-14 09:41:45,705 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 04:42:42] 2026-01-14 09:41:46,563 | INFO     | monitor loop #323: job 0:6969265735 is in state 'finished'
[2026-01-14 04:42:42] 2026-01-14 09:41:46,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 04:42:42] 2026-01-14 09:41:46,737 | INFO     | job 6969265735 has state=finished
[2026-01-14 04:42:42] 2026-01-14 09:41:46,737 | INFO     | preparing for final server update for job 6969265735 in state='finished'
[2026-01-14 04:42:42] 2026-01-14 09:41:46,738 | INFO     | this job has now completed (state=finished)
[2026-01-14 04:42:42] 2026-01-14 09:41:46,738 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 04:42:42] 2026-01-14 09:41:46,738 | INFO     | log transfer has been attempted: DONE
[2026-01-14 04:42:42] 2026-01-14 09:41:46,738 | INFO     | job 6969265735 has finished - writing final server update
[2026-01-14 04:42:42] 2026-01-14 09:41:46,739 | INFO     | total number of processed events: 400 (read)
[2026-01-14 04:42:42] 2026-01-14 09:41:46,740 | INFO     | executing command: lscpu
[2026-01-14 04:42:42] 2026-01-14 09:41:46,766 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 04:42:42] 2026-01-14 09:41:47,373 | INFO     | time since job start (4339s) is within the limit (349056.0s)
[2026-01-14 04:42:42] 2026-01-14 09:41:49,067 | INFO     | monitor loop #324: job 0:6969265735 is in state 'finished'
[2026-01-14 04:42:42] 2026-01-14 09:41:49,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 04:42:42] 2026-01-14 09:41:49,380 | INFO     | time since job start (4341s) is within the limit (349056.0s)
[2026-01-14 04:42:42] 2026-01-14 09:41:51,386 | INFO     | time since job start (4343s) is within the limit (349056.0s)
[2026-01-14 04:42:42] 2026-01-14 09:41:51,570 | INFO     | monitor loop #325: job 0:6969265735 is in state 'finished'
[2026-01-14 04:42:42] 2026-01-14 09:41:51,571 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 04:42:42] 2026-01-14 09:41:52,338 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-14 04:42:42] 2026-01-14 09:41:52,342 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1845.625
[2026-01-14 04:42:42] 2026-01-14 09:41:52,344 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969265735/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 04:42:42] 2026-01-14 09:41:52,346 | INFO     | extracted standard info from prmon json
[2026-01-14 04:42:42] 2026-01-14 09:41:52,346 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 04:42:42] 2026-01-14 09:41:52,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 04:42:42] 2026-01-14 09:41:52,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 04:42:42] 2026-01-14 09:41:52,347 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 04:42:42] 2026-01-14 09:41:52,349 | INFO     | fitting pss+swap vs Time
[2026-01-14 04:42:42] 2026-01-14 09:41:52,350 | INFO     | sum of square deviations: 81266640.0
[2026-01-14 04:42:42] 2026-01-14 09:41:52,350 | INFO     | sum of deviations: -7379311154.0
[2026-01-14 04:42:42] 2026-01-14 09:41:52,350 | INFO     | mean x: 1768381625.5
[2026-01-14 04:42:42] 2026-01-14 09:41:52,350 | INFO     | mean y: 2723579.9375
[2026-01-14 04:42:42] 2026-01-14 09:41:52,351 | INFO     | intersect: 160578308513.44528
[2026-01-14 04:42:42] 2026-01-14 09:41:52,351 | INFO     | chi2: 0.05713347055381583
[2026-01-14 04:42:42] 2026-01-14 09:41:52,351 | INFO     | current memory leak: -90.80 B/s (using 64 data points, chi2=0.06)
[2026-01-14 04:42:42] 2026-01-14 09:41:52,351 | INFO     | could have reported an average CPU frequency of 2020 MHz (6 samples)
[2026-01-14 04:42:42] 2026-01-14 09:41:52,352 | INFO     | ..............................
[2026-01-14 04:42:42] 2026-01-14 09:41:52,352 | INFO     | . Timing measurements:
[2026-01-14 04:42:42] 2026-01-14 09:41:52,352 | INFO     | . get job = 0 s
[2026-01-14 04:42:42] 2026-01-14 09:41:52,352 | INFO     | . initial setup = 2 s
[2026-01-14 04:42:42] 2026-01-14 09:41:52,352 | INFO     | . payload setup = 8 s
[2026-01-14 04:42:42] 2026-01-14 09:41:52,352 | INFO     | . stage-in = 0 s
[2026-01-14 04:42:42] 2026-01-14 09:41:52,352 | INFO     | . payload execution = 4307 s
[2026-01-14 04:42:42] 2026-01-14 09:41:52,353 | INFO     | . stage-out = 0 s
[2026-01-14 04:42:42] 2026-01-14 09:41:52,353 | INFO     | . log creation = 0 s
[2026-01-14 04:42:42] 2026-01-14 09:41:52,353 | INFO     | ..............................
[2026-01-14 04:42:42] 2026-01-14 09:41:52,682 | INFO     | 
[2026-01-14 04:42:42] 2026-01-14 09:41:52,682 | INFO     | job summary report
[2026-01-14 04:42:42] 2026-01-14 09:41:52,683 | INFO     | --------------------------------------------------
[2026-01-14 04:42:42] 2026-01-14 09:41:52,683 | INFO     | PanDA job id: 6969265735
[2026-01-14 04:42:42] 2026-01-14 09:41:52,683 | INFO     | task id: 48215263
[2026-01-14 04:42:42] 2026-01-14 09:41:52,683 | INFO     | errors: (none)
[2026-01-14 04:42:42] 2026-01-14 09:41:52,683 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 04:42:42] 2026-01-14 09:41:52,684 | INFO     | pilot state: finished 
[2026-01-14 04:42:42] 2026-01-14 09:41:52,684 | INFO     | transexitcode: 0
[2026-01-14 04:42:42] 2026-01-14 09:41:52,684 | INFO     | exeerrorcode: 0
[2026-01-14 04:42:42] 2026-01-14 09:41:52,684 | INFO     | exeerrordiag: 
[2026-01-14 04:42:42] 2026-01-14 09:41:52,684 | INFO     | exitcode: 0
[2026-01-14 04:42:42] 2026-01-14 09:41:52,685 | INFO     | exitmsg: OK
[2026-01-14 04:42:42] 2026-01-14 09:41:52,685 | INFO     | cpuconsumptiontime: 31497 s
[2026-01-14 04:42:42] 2026-01-14 09:41:52,685 | INFO     | nevents: 400
[2026-01-14 04:42:42] 2026-01-14 09:41:52,685 | INFO     | neventsw: 0
[2026-01-14 04:42:42] 2026-01-14 09:41:52,685 | INFO     | pid: 29137
[2026-01-14 04:42:42] 2026-01-14 09:41:52,685 | INFO     | pgrp: 29137
[2026-01-14 04:42:42] 2026-01-14 09:41:52,686 | INFO     | corecount: 8
[2026-01-14 04:42:42] 2026-01-14 09:41:52,686 | INFO     | event service: False
[2026-01-14 04:42:42] 2026-01-14 09:41:52,686 | INFO     | sizes: {0: 2283945, 6: 2284207, 11: 2284235, 4319: 2310250, 4320: 2319304, 4327: 2319442}
[2026-01-14 04:42:42] 2026-01-14 09:41:52,686 | INFO     | --------------------------------------------------
[2026-01-14 04:42:42] 2026-01-14 09:41:52,686 | INFO     | 
[2026-01-14 04:42:42] 2026-01-14 09:41:52,687 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-14 04:42:42] 2026-01-14 09:41:52,714 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,715 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,715 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,715 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,715 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,718 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 04:42:42] 2026-01-14 09:41:52,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,718 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 04:42:42] 2026-01-14 09:41:52,718 | INFO     | job 6969265735 has completed (purged errors)
[2026-01-14 04:42:42] 2026-01-14 09:41:52,719 | INFO     | overall cleanup function is called
[2026-01-14 04:42:42] 2026-01-14 09:41:53,727 | INFO     | --- collectZombieJob: --- 10, [29137]
[2026-01-14 04:42:42] 2026-01-14 09:41:53,727 | INFO     | zombie collector waiting for pid 29137
[2026-01-14 04:42:42] 2026-01-14 09:41:53,727 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 04:42:42] 2026-01-14 09:41:53,728 | INFO     | collected zombie processes
[2026-01-14 04:42:42] 2026-01-14 09:41:53,728 | INFO     | will attempt to kill all subprocesses of pid=29137
[2026-01-14 04:42:42] 2026-01-14 09:41:53,810 | INFO     | process IDs to be killed: [29137] (in reverse order)
[2026-01-14 04:42:42] 2026-01-14 09:41:53,861 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 04:42:42] 2026-01-14 09:41:53,861 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 04:42:42] 2026-01-14 09:41:53,865 | INFO     | did not find any defunct processes belonging to 29137
[2026-01-14 04:42:42] 2026-01-14 09:41:53,869 | INFO     | did not find any defunct processes belonging to 29137
[2026-01-14 04:42:42] 2026-01-14 09:41:53,869 | INFO     | ready for new job
[2026-01-14 04:42:42] 2026-01-14 09:41:53,870 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 04:42:42] 2026-01-14 09:41:53,871 | INFO     | ***************************************
[2026-01-14 04:42:42] 2026-01-14 09:41:53,872 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 04:42:42] 2026-01-14 09:41:53,872 | INFO     | ***************************************
[2026-01-14 04:42:42] 2026-01-14 09:41:53,872 | INFO     | 
[2026-01-14 04:42:42] 2026-01-14 09:41:53,872 | INFO     | architecture information:
[2026-01-14 04:42:42] 2026-01-14 09:41:53,873 | INFO     | executing command: cat /etc/os-release
[2026-01-14 04:42:42] 2026-01-14 09:41:53,892 | INFO     | cat /etc/os-release:
[2026-01-14 04:42:42] NAME="CentOS Linux"
[2026-01-14 04:42:42] VERSION="7 (Core)"
[2026-01-14 04:42:42] ID="centos"
[2026-01-14 04:42:42] ID_LIKE="rhel fedora"
[2026-01-14 04:42:42] VERSION_ID="7"
[2026-01-14 04:42:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 04:42:42] ANSI_COLOR="0;31"
[2026-01-14 04:42:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 04:42:42] HOME_URL="https://www.centos.org/"
[2026-01-14 04:42:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 04:42:42] 
[2026-01-14 04:42:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 04:42:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 04:42:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 04:42:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 04:42:42] 
[2026-01-14 04:42:42] 2026-01-14 09:41:53,892 | INFO     | ***************************************
[2026-01-14 04:42:42] 2026-01-14 09:41:54,395 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-14 04:42:42] 2026-01-14 09:41:54,417 | INFO     | sufficient remaining disk space (17868783616 B)
[2026-01-14 04:42:42] 2026-01-14 09:41:54,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 04:42:42] 2026-01-14 09:41:54,418 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 04:42:42] 2026-01-14 09:41:54,418 | INFO     | update_server=False
[2026-01-14 04:42:42] 2026-01-14 09:41:54,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 04:42:42] 2026-01-14 09:41:54,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 04:42:42] 2026-01-14 09:41:54,419 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:42:42] 2026-01-14 09:41:54,694 | INFO     | all data control threads have been joined
[2026-01-14 04:42:42] 2026-01-14 09:41:54,848 | INFO     | all job control threads have been joined
[2026-01-14 04:42:42] 2026-01-14 09:41:55,079 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:42:42] 2026-01-14 09:41:55,079 | INFO     | aborting loop
[2026-01-14 04:42:42] 2026-01-14 09:41:55,420 | INFO     | [job] retrieve thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:55,425 | INFO     | [job] queue monitor thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:55,451 | INFO     | [job] validate thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:55,494 | INFO     | [payload] validate_post thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:55,598 | INFO     | [payload] failed_post thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:55,607 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:55,699 | INFO     | [data] control thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:55,713 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:55,853 | INFO     | [job] control thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:55,907 | INFO     | all payload control threads have been joined
[2026-01-14 04:42:42] 2026-01-14 09:41:56,085 | INFO     | [job] job monitor thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:56,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 04:42:42] 2026-01-14 09:41:56,311 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:56,420 | INFO     | [data] copytool_out thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:56,516 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:56,895 | INFO     | [data] copytool_in thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:41:56,911 | INFO     | [payload] control thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:42:00,300 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 04:42:42] 2026-01-14 09:42:24,601 | INFO     | PID=22749 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-14 04:42:42] 2026-01-14 09:42:24,601 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 04:42:42] 2026-01-14 09:42:24,601 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 04:42:42] 2026-01-14 09:42:24,601 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 04:42:42] 2026-01-14 09:42:35,164 | INFO     | [monitor] cgroup control has ended
[2026-01-14 04:42:42] 2026-01-14 09:42:36,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140632397264704)>', '<ExcThread(monitor, started 140631422777088)>']
[2026-01-14 04:42:42] 2026-01-14 09:42:37,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 04:42:42] 2026-01-14 09:42:37,663 | INFO     | [monitor] control thread has ended
[2026-01-14 04:42:42] 2026-01-14 09:42:41,872 | INFO     | all workflow threads have been joined
[2026-01-14 04:42:42] 2026-01-14 09:42:41,872 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 04:42:42] 2026-01-14 09:42:41,872 | INFO     | traces error code: 0
[2026-01-14 04:42:42] 2026-01-14 09:42:41,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 04:42:42] 2026-01-14 09:42:41,975 [wrapper] ==== pilot stdout END ====
[2026-01-14 04:42:42] 2026-01-14 09:42:41,980 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 04:42:42] 2026-01-14 09:42:41,985 [wrapper] pilotpid: 22749
[2026-01-14 04:42:42] 2026-01-14 09:42:41,989 [wrapper] Pilot exit status: 0
[2026-01-14 04:42:42] 2026-01-14 09:42:42,008 [wrapper] pandaids: 6969265735
[2026-01-14 04:42:42] 2026-01-14 09:42:42,058 [wrapper] cleanup supervisor_pilot 26534 22750
[2026-01-14 04:42:42] 2026-01-14 09:42:42,063 [wrapper] Test setup, not cleaning
[2026-01-14 04:42:42] 2026-01-14 09:42:42,067 [wrapper] apfmon messages muted
[2026-01-14 04:42:42] 2026-01-14 09:42:42,072 [wrapper] ==== wrapper stdout END ====
[2026-01-14 04:42:42] 2026-01-14 09:42:42,077 [wrapper] ==== wrapper stderr END ====
[2026-01-14 04:42:42]  *** Error codes and diagnostics ***
[2026-01-14 04:42:42]     "exeErrorCode": 0,
[2026-01-14 04:42:42]     "exeErrorDiag": "",
[2026-01-14 04:42:42]     "pilotErrorCode": 0,
[2026-01-14 04:42:42]     "pilotErrorDiag": "",
[2026-01-14 04:42:42]  *** Listing of results directory ***
[2026-01-14 04:42:42] total 731740
[2026-01-14 04:42:42] -rwx------ 1 boincer umatlas     36322 Jan 13 16:58 runpilot2-wrapper.sh
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas    579449 Jan 13 17:05 pilot3.tar.gz
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas      5112 Jan 13 17:12 queuedata.json
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas       100 Jan 14 03:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 04:42:42] -rwxr-xr-x 1 boincer umatlas      7986 Jan 14 03:29 run_atlas
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas       105 Jan 14 03:29 job.xml
[2026-01-14 04:42:42] -rw-r--r-- 2 boincer umatlas 595036341 Jan 14 03:29 EVNT.32794306._000191.pool.root.1
[2026-01-14 04:42:42] -rw-r--r-- 2 boincer umatlas     15847 Jan 14 03:29 start_atlas.sh
[2026-01-14 04:42:42] drwxrwx--x 2 boincer umatlas      4096 Jan 14 03:29 shared
[2026-01-14 04:42:42] -rw-r--r-- 2 boincer umatlas    592390 Jan 14 03:29 input.tar.gz
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas         0 Jan 14 03:29 boinc_lockfile
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas      2505 Jan 14 03:29 pandaJob.out
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas        57 Jan 14 03:29 setup.sh.local
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas    997218 Jan 14 03:29 agis_schedconf.cvmfs.json
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas   1516246 Jan 14 03:29 agis_ddmendpoints.agis.ALL.json
[2026-01-14 04:42:42] drwx------ 5 boincer umatlas      4096 Jan 14 03:29 pilot3
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas      5908 Jan 14 04:40 init_data.xml
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas 148432126 Jan 14 04:41 HITS.48215263._004759.pool.root.1
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas        95 Jan 14 04:41 pilot_heartbeat.json
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas       530 Jan 14 04:41 boinc_task_state.xml
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas      1044 Jan 14 04:41 memory_monitor_summary.json
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas    318008 Jan 14 04:41 log.48215263._004759.job.log.tgz.1
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas      7835 Jan 14 04:41 heartbeat.json
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas      8192 Jan 14 04:42 boinc_mmap_file
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas        27 Jan 14 04:42 wrapper_checkpoint.txt
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas      4746 Jan 14 04:42 pilotlog.txt
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas    631434 Jan 14 04:42 log.48215263._004759.job.log.1
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas       357 Jan 14 04:42 output.list
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas       620 Jan 14 04:42 runtime_log
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas    972800 Jan 14 04:42 result.tar.gz
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas       657 Jan 14 04:42 sV4LDmPa1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCmoKDmfDt50m.diag
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas      9337 Jan 14 04:42 runtime_log.err
[2026-01-14 04:42:42] -rw-r--r-- 1 boincer umatlas     21663 Jan 14 04:42 stderr.txt
[2026-01-14 04:42:42] HITS file was successfully produced:
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas 148432126 Jan 14 04:41 shared/HITS.pool.root.1
[2026-01-14 04:42:42]  *** Contents of shared directory: ***
[2026-01-14 04:42:42] total 727604
[2026-01-14 04:42:42] -rw-r--r-- 2 boincer umatlas 595036341 Jan 14 03:29 ATLAS.root_0
[2026-01-14 04:42:42] -rw-r--r-- 2 boincer umatlas     15847 Jan 14 03:29 start_atlas.sh
[2026-01-14 04:42:42] -rw-r--r-- 2 boincer umatlas    592390 Jan 14 03:29 input.tar.gz
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas 148432126 Jan 14 04:41 HITS.pool.root.1
[2026-01-14 04:42:42] -rw------- 1 boincer umatlas    972800 Jan 14 04:42 result.tar.gz
04:42:44 (19071): run_atlas exited; CPU time 31474.525301
04:42:44 (19071): called boinc_finish(0)

</stderr_txt>
]]>

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