Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:34:51 (3159389): wrapper (7.7.26015): starting
10:34:51 (3159389): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 10:34:51] Arguments: --nthreads 3
[2026-01-14 10:34:51] Threads: 3
[2026-01-14 10:34:51] Checking for CVMFS
[2026-01-14 10:34:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 10:34:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 10:34:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 10:34:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 10:34:51] 2.9.2.0 2866369 774 73632 155125 3 57 23651721 36864001 0 130560 0 794329 99.991 34298 1776 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 10:34:51] CVMFS is ok
[2026-01-14 10:34:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 10:34:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 10:34:51] Further information can be found at the LHC@home message board.
[2026-01-14 10:34:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 10:34:51] Checking for apptainer binary...
[2026-01-14 10:34:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 10:34:51] Running /usr/bin/apptainer --version
[2026-01-14 10:34:51] apptainer version 1.4.1-1.1
[2026-01-14 10:34:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 10:34:51] magicA161a
[2026-01-14 10:34:51] apptainer works
[2026-01-14 10:34:51] Set ATHENA_PROC_NUMBER=3
[2026-01-14 10:34:51] Set ATHENA_CORE_NUMBER=3
[2026-01-14 10:34:51] Starting ATLAS job with PandaID=6969307560
[2026-01-14 10:34:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 11:29:08]  *** The last 200 lines of the pilot log: ***
[2026-01-14 11:29:08] 2026-01-14 10:28:35,439 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 11:29:08] 2026-01-14 10:28:35,439 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 11:29:08] 2026-01-14 10:28:35,439 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 11:29:08] 2026-01-14 10:28:35,439 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 11:29:08] 2026-01-14 10:28:35,439 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 11:29:08] 2026-01-14 10:28:35,439 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 11:29:08] 2026-01-14 10:28:35,439 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 11:29:08] 2026-01-14 10:28:35,439 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 11:29:08] 2026-01-14 10:28:35,439 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 11:29:08] 2026-01-14 10:28:35,440 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 11:29:08] 2026-01-14 10:28:35,440 | INFO     | job 6969307560 has completed (purged errors)
[2026-01-14 11:29:08] 2026-01-14 10:28:35,440 | INFO     | overall cleanup function is called
[2026-01-14 11:29:08] 2026-01-14 10:28:36,446 | INFO     | --- collectZombieJob: --- 10, [3169552]
[2026-01-14 11:29:08] 2026-01-14 10:28:36,446 | INFO     | zombie collector waiting for pid 3169552
[2026-01-14 11:29:08] 2026-01-14 10:28:36,447 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 11:29:08] 2026-01-14 10:28:36,447 | INFO     | collected zombie processes
[2026-01-14 11:29:08] 2026-01-14 10:28:36,447 | INFO     | will attempt to kill all subprocesses of pid=3169552
[2026-01-14 11:29:08] 2026-01-14 10:28:36,488 | INFO     | process IDs to be killed: [3169552] (in reverse order)
[2026-01-14 11:29:08] 2026-01-14 10:28:36,512 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 11:29:08] 2026-01-14 10:28:36,512 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 11:29:08] 2026-01-14 10:28:36,513 | INFO     | did not find any defunct processes belonging to 3169552
[2026-01-14 11:29:08] 2026-01-14 10:28:36,514 | INFO     | did not find any defunct processes belonging to 3169552
[2026-01-14 11:29:08] 2026-01-14 10:28:36,514 | INFO     | ready for new job
[2026-01-14 11:29:08] 2026-01-14 10:28:36,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 11:29:08] 2026-01-14 10:28:36,515 | INFO     | ***************************************
[2026-01-14 11:29:08] 2026-01-14 10:28:36,515 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 11:29:08] 2026-01-14 10:28:36,515 | INFO     | ***************************************
[2026-01-14 11:29:08] 2026-01-14 10:28:36,515 | INFO     | 
[2026-01-14 11:29:08] 2026-01-14 10:28:36,515 | INFO     | architecture information:
[2026-01-14 11:29:08] 2026-01-14 10:28:36,516 | INFO     | executing command: cat /etc/os-release
[2026-01-14 11:29:08] 2026-01-14 10:28:36,524 | INFO     | cat /etc/os-release:
[2026-01-14 11:29:08] NAME="CentOS Linux"
[2026-01-14 11:29:08] VERSION="7 (Core)"
[2026-01-14 11:29:08] ID="centos"
[2026-01-14 11:29:08] ID_LIKE="rhel fedora"
[2026-01-14 11:29:08] VERSION_ID="7"
[2026-01-14 11:29:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 11:29:08] ANSI_COLOR="0;31"
[2026-01-14 11:29:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 11:29:08] HOME_URL="https://www.centos.org/"
[2026-01-14 11:29:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 11:29:08] 
[2026-01-14 11:29:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 11:29:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 11:29:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 11:29:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 11:29:08] 
[2026-01-14 11:29:08] 2026-01-14 10:28:36,524 | INFO     | ***************************************
[2026-01-14 11:29:08] 2026-01-14 10:28:37,027 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 11:29:08] 2026-01-14 10:28:37,040 | INFO     | sufficient remaining disk space (381001138176 B)
[2026-01-14 11:29:08] 2026-01-14 10:28:37,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 11:29:08] 2026-01-14 10:28:37,040 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 11:29:08] 2026-01-14 10:28:37,040 | INFO     | update_server=False
[2026-01-14 11:29:08] 2026-01-14 10:28:37,040 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 11:29:08] 2026-01-14 10:28:37,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 11:29:08] 2026-01-14 10:28:37,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 11:29:08] 2026-01-14 10:28:37,254 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 11:29:08] 2026-01-14 10:28:37,254 | INFO     | aborting loop
[2026-01-14 11:29:08] 2026-01-14 10:28:37,810 | INFO     | all data control threads have been joined
[2026-01-14 11:29:08] 2026-01-14 10:28:38,046 | INFO     | [job] queue monitor thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:38,046 | INFO     | [job] retrieve thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:38,075 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:38,257 | INFO     | [job] job monitor thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:38,447 | INFO     | all payload control threads have been joined
[2026-01-14 11:29:08] 2026-01-14 10:28:38,471 | INFO     | [payload] validate_post thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:38,628 | INFO     | all job control threads have been joined
[2026-01-14 11:29:08] 2026-01-14 10:28:38,758 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:38,816 | INFO     | [data] control thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:38,934 | INFO     | [data] copytool_in thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:39,075 | INFO     | [data] copytool_out thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:39,452 | INFO     | [job] validate thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:39,453 | INFO     | [payload] control thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:39,453 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:39,541 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:39,554 | INFO     | [payload] failed_post thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:39,633 | INFO     | [job] control thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:28:39,936 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 11:29:08] 2026-01-14 10:28:43,944 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 11:29:08] 2026-01-14 10:29:00,884 | INFO     | [monitor] cgroup control has ended
[2026-01-14 11:29:08] 2026-01-14 10:29:02,740 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140687370929984)>', '<ExcThread(monitor, started 140686745659136)>']
[2026-01-14 11:29:08] 2026-01-14 10:29:07,766 | INFO     | all workflow threads have been joined
[2026-01-14 11:29:08] 2026-01-14 10:29:07,766 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 11:29:08] 2026-01-14 10:29:07,766 | INFO     | traces error code: 0
[2026-01-14 11:29:08] 2026-01-14 10:29:07,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 11:29:08] 2026-01-14 10:29:08,032 | INFO     | PID=3163111 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 11:29:08] 2026-01-14 10:29:08,032 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 11:29:08] 2026-01-14 10:29:08,032 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 11:29:08] 2026-01-14 10:29:08,032 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 11:29:08] 2026-01-14 10:29:08,032 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 11:29:08] 2026-01-14 10:29:08,032 | INFO     | [monitor] control thread has ended
[2026-01-14 11:29:08] 2026-01-14 10:29:08,078 [wrapper] ==== pilot stdout END ====
[2026-01-14 11:29:08] 2026-01-14 10:29:08,080 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 11:29:08] 2026-01-14 10:29:08,083 [wrapper] pilotpid: 3163111
[2026-01-14 11:29:08] 2026-01-14 10:29:08,085 [wrapper] Pilot exit status: 0
[2026-01-14 11:29:08] 2026-01-14 10:29:08,092 [wrapper] pandaids: 6969307560
[2026-01-14 11:29:08] 2026-01-14 10:29:08,107 [wrapper] cleanup supervisor_pilot 3178734 3163112
[2026-01-14 11:29:08] 2026-01-14 10:29:08,110 [wrapper] Test setup, not cleaning
[2026-01-14 11:29:08] 2026-01-14 10:29:08,112 [wrapper] apfmon messages muted
[2026-01-14 11:29:08] 2026-01-14 10:29:08,114 [wrapper] ==== wrapper stdout END ====
[2026-01-14 11:29:08] 2026-01-14 10:29:08,117 [wrapper] ==== wrapper stderr END ====
[2026-01-14 11:29:08]  *** Error codes and diagnostics ***
[2026-01-14 11:29:08]     "exeErrorCode": 0,
[2026-01-14 11:29:08]     "exeErrorDiag": "",
[2026-01-14 11:29:08]     "pilotErrorCode": 0,
[2026-01-14 11:29:08]     "pilotErrorDiag": "",
[2026-01-14 11:29:08]  *** Listing of results directory ***
[2026-01-14 11:29:08] total 738796
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc    579449 Jan 14 04:13 pilot3.tar.gz
[2026-01-14 11:29:08] -rwx------ 1 boinc boinc     36322 Jan 14 04:16 runpilot2-wrapper.sh
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc      5112 Jan 14 04:21 queuedata.json
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc       100 Jan 14 10:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 11:29:08] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 10:34 run_atlas
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc       105 Jan 14 10:34 job.xml
[2026-01-14 11:29:08] -rw-r--r-- 2 boinc boinc 596321823 Jan 14 10:34 EVNT.32794306._000530.pool.root.1
[2026-01-14 11:29:08] -rw-r--r-- 2 boinc boinc    592402 Jan 14 10:34 input.tar.gz
[2026-01-14 11:29:08] -rw-r--r-- 2 boinc boinc     15847 Jan 14 10:34 start_atlas.sh
[2026-01-14 11:29:08] drwxrwx--x 2 boinc boinc      4096 Jan 14 10:34 shared
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc         0 Jan 14 10:34 boinc_setup_complete
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc      6448 Jan 14 10:34 init_data.xml
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc         0 Jan 14 10:34 boinc_lockfile
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc      2507 Jan 14 10:34 pandaJob.out
[2026-01-14 11:29:08] -rw------- 1 boinc boinc    997218 Jan 14 10:34 agis_schedconf.cvmfs.json
[2026-01-14 11:29:08] -rw------- 1 boinc boinc   1516246 Jan 14 10:34 agis_ddmendpoints.agis.ALL.json
[2026-01-14 11:29:08] drwx------ 5 boinc boinc      4096 Jan 14 10:34 pilot3
[2026-01-14 11:29:08] -rw------- 1 boinc boinc 154838218 Jan 14 11:28 HITS.48215263._013247.pool.root.1
[2026-01-14 11:29:08] -rw------- 1 boinc boinc        95 Jan 14 11:28 pilot_heartbeat.json
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc       529 Jan 14 11:28 boinc_task_state.xml
[2026-01-14 11:29:08] -rw------- 1 boinc boinc      1017 Jan 14 11:28 memory_monitor_summary.json
[2026-01-14 11:29:08] -rw------- 1 boinc boinc    240280 Jan 14 11:28 log.48215263._013247.job.log.tgz.1
[2026-01-14 11:29:08] -rw------- 1 boinc boinc      7755 Jan 14 11:28 heartbeat.json
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc      8192 Jan 14 11:28 boinc_mmap_file
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc        26 Jan 14 11:28 wrapper_checkpoint.txt
[2026-01-14 11:29:08] -rw------- 1 boinc boinc       747 Jan 14 11:29 pilotlog.txt
[2026-01-14 11:29:08] -rw------- 1 boinc boinc    490651 Jan 14 11:29 log.48215263._013247.job.log.1
[2026-01-14 11:29:08] -rw------- 1 boinc boinc       357 Jan 14 11:29 output.list
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc       620 Jan 14 11:29 runtime_log
[2026-01-14 11:29:08] -rw------- 1 boinc boinc    747520 Jan 14 11:29 result.tar.gz
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc      8917 Jan 14 11:29 runtime_log.err
[2026-01-14 11:29:08] -rw------- 1 boinc boinc       660 Jan 14 11:29 IPdLDmXY6z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm39pKDmnv2TLm.diag
[2026-01-14 11:29:08] -rw-r--r-- 1 boinc boinc     11830 Jan 14 11:29 stderr.txt
[2026-01-14 11:29:08] HITS file was successfully produced:
[2026-01-14 11:29:08] -rw------- 1 boinc boinc 154838218 Jan 14 11:28 shared/HITS.pool.root.1
[2026-01-14 11:29:08]  *** Contents of shared directory: ***
[2026-01-14 11:29:08] total 734896
[2026-01-14 11:29:08] -rw-r--r-- 2 boinc boinc 596321823 Jan 14 10:34 ATLAS.root_0
[2026-01-14 11:29:08] -rw-r--r-- 2 boinc boinc    592402 Jan 14 10:34 input.tar.gz
[2026-01-14 11:29:08] -rw-r--r-- 2 boinc boinc     15847 Jan 14 10:34 start_atlas.sh
[2026-01-14 11:29:08] -rw------- 1 boinc boinc 154838218 Jan 14 11:28 HITS.pool.root.1
[2026-01-14 11:29:08] -rw------- 1 boinc boinc    747520 Jan 14 11:29 result.tar.gz
11:29:10 (3159389): run_atlas exited; CPU time 9037.512935
11:29:10 (3159389): called boinc_finish(0)

</stderr_txt>
]]>

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