Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:39:12 (3137441): wrapper (7.7.26015): starting
09:39:12 (3137441): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 09:39:12] Arguments: --nthreads 3
[2026-01-14 09:39:12] Threads: 3
[2026-01-14 09:39:12] Checking for CVMFS
[2026-01-14 09:39:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 09:39:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 09:39:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 09:39:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 09:39:13] 2.9.2.0 2866369 718 72800 155124 3 57 23648478 36864001 0 130560 0 734088 99.991 32953 1709 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 09:39:13] CVMFS is ok
[2026-01-14 09:39:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 09:39:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 09:39:13] Further information can be found at the LHC@home message board.
[2026-01-14 09:39:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 09:39:13] Checking for apptainer binary...
[2026-01-14 09:39:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 09:39:13] Running /usr/bin/apptainer --version
[2026-01-14 09:39:13] apptainer version 1.4.1-1.1
[2026-01-14 09:39:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 09:39:13] magicA161a
[2026-01-14 09:39:13] apptainer works
[2026-01-14 09:39:13] Set ATHENA_PROC_NUMBER=3
[2026-01-14 09:39:13] Set ATHENA_CORE_NUMBER=3
[2026-01-14 09:39:13] Starting ATLAS job with PandaID=6969306587
[2026-01-14 09:39:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 10:34:26]  *** The last 200 lines of the pilot log: ***
[2026-01-14 10:34:26] 2026-01-14 09:34:06,384 | INFO     | will attempt to kill all subprocesses of pid=3147612
[2026-01-14 10:34:26] 2026-01-14 09:34:06,427 | INFO     | process IDs to be killed: [3147612] (in reverse order)
[2026-01-14 10:34:26] 2026-01-14 09:34:06,450 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 10:34:26] 2026-01-14 09:34:06,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 10:34:26] 2026-01-14 09:34:06,452 | INFO     | did not find any defunct processes belonging to 3147612
[2026-01-14 10:34:26] 2026-01-14 09:34:06,453 | INFO     | did not find any defunct processes belonging to 3147612
[2026-01-14 10:34:26] 2026-01-14 09:34:06,453 | INFO     | ready for new job
[2026-01-14 10:34:26] 2026-01-14 09:34:06,453 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 10:34:26] 2026-01-14 09:34:06,454 | INFO     | ***************************************
[2026-01-14 10:34:26] 2026-01-14 09:34:06,454 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 10:34:26] 2026-01-14 09:34:06,454 | INFO     | ***************************************
[2026-01-14 10:34:26] 2026-01-14 09:34:06,454 | INFO     | 
[2026-01-14 10:34:26] 2026-01-14 09:34:06,454 | INFO     | architecture information:
[2026-01-14 10:34:26] 2026-01-14 09:34:06,454 | INFO     | executing command: cat /etc/os-release
[2026-01-14 10:34:26] 2026-01-14 09:34:06,462 | INFO     | cat /etc/os-release:
[2026-01-14 10:34:26] NAME="CentOS Linux"
[2026-01-14 10:34:26] VERSION="7 (Core)"
[2026-01-14 10:34:26] ID="centos"
[2026-01-14 10:34:26] ID_LIKE="rhel fedora"
[2026-01-14 10:34:26] VERSION_ID="7"
[2026-01-14 10:34:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 10:34:26] ANSI_COLOR="0;31"
[2026-01-14 10:34:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 10:34:26] HOME_URL="https://www.centos.org/"
[2026-01-14 10:34:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 10:34:26] 
[2026-01-14 10:34:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 10:34:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 10:34:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 10:34:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 10:34:26] 
[2026-01-14 10:34:26] 2026-01-14 09:34:06,463 | INFO     | ***************************************
[2026-01-14 10:34:26] 2026-01-14 09:34:06,966 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 10:34:26] 2026-01-14 09:34:06,978 | INFO     | sufficient remaining disk space (381011623936 B)
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | INFO     | update_server=False
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 10:34:26] 2026-01-14 09:34:06,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 10:34:26] 2026-01-14 09:34:07,163 | INFO     | all data control threads have been joined
[2026-01-14 10:34:26] 2026-01-14 09:34:07,262 | INFO     | all job control threads have been joined
[2026-01-14 10:34:26] 2026-01-14 09:34:07,369 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-14 10:34:26] 2026-01-14 09:34:07,369 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 10:34:26] 2026-01-14 09:34:07,369 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 10:34:26] 2026-01-14 09:34:07,369 | INFO     | will abort loop
[2026-01-14 10:34:26] 2026-01-14 09:34:07,984 | INFO     | [job] retrieve thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:07,985 | INFO     | [job] queue monitor thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:08,169 | INFO     | [data] control thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:08,220 | INFO     | all payload control threads have been joined
[2026-01-14 10:34:26] 2026-01-14 09:34:08,268 | INFO     | [job] control thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:08,375 | INFO     | [job] job monitor thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:08,377 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:08,535 | INFO     | [data] copytool_in thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:08,869 | INFO     | [payload] failed_post thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:08,986 | INFO     | [data] copytool_out thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:09,075 | INFO     | [job] validate thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:09,156 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:09,207 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:09,226 | INFO     | [payload] control thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:09,308 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:09,396 | INFO     | [payload] validate_post thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:09,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 10:34:26] 2026-01-14 09:34:13,475 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 10:34:26] 2026-01-14 09:34:21,516 | INFO     | [monitor] cgroup control has ended
[2026-01-14 10:34:26] 2026-01-14 09:34:21,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140207932823360)>', '<ExcThread(monitor, started 140207294756608)>']
[2026-01-14 10:34:26] 2026-01-14 09:34:22,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 10:34:26] 2026-01-14 09:34:22,057 | INFO     | [monitor] control thread has ended
[2026-01-14 10:34:26] 2026-01-14 09:34:26,615 | INFO     | all workflow threads have been joined
[2026-01-14 10:34:26] 2026-01-14 09:34:26,615 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 10:34:26] 2026-01-14 09:34:26,615 | INFO     | traces error code: 0
[2026-01-14 10:34:26] 2026-01-14 09:34:26,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 10:34:26] 2026-01-14 09:34:26,665 [wrapper] ==== pilot stdout END ====
[2026-01-14 10:34:26] 2026-01-14 09:34:26,667 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 10:34:26] 2026-01-14 09:34:26,669 [wrapper] pilotpid: 3141162
[2026-01-14 10:34:26] 2026-01-14 09:34:26,672 [wrapper] Pilot exit status: 0
[2026-01-14 10:34:26] 2026-01-14 09:34:26,679 [wrapper] pandaids: 6969306587
[2026-01-14 10:34:26] 2026-01-14 09:34:26,694 [wrapper] cleanup supervisor_pilot 3156782 3141163
[2026-01-14 10:34:26] 2026-01-14 09:34:26,697 [wrapper] Test setup, not cleaning
[2026-01-14 10:34:26] 2026-01-14 09:34:26,699 [wrapper] apfmon messages muted
[2026-01-14 10:34:26] 2026-01-14 09:34:26,701 [wrapper] ==== wrapper stdout END ====
[2026-01-14 10:34:26] 2026-01-14 09:34:26,704 [wrapper] ==== wrapper stderr END ====
[2026-01-14 10:34:26]  *** Error codes and diagnostics ***
[2026-01-14 10:34:26]     "exeErrorCode": 0,
[2026-01-14 10:34:26]     "exeErrorDiag": "",
[2026-01-14 10:34:26]     "pilotErrorCode": 0,
[2026-01-14 10:34:26]     "pilotErrorDiag": "",
[2026-01-14 10:34:26]  *** Listing of results directory ***
[2026-01-14 10:34:26] total 744696
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc    579449 Jan 14 04:13 pilot3.tar.gz
[2026-01-14 10:34:26] -rwx------ 1 boinc boinc     36322 Jan 14 04:16 runpilot2-wrapper.sh
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc      5112 Jan 14 04:21 queuedata.json
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc       100 Jan 14 09:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 10:34:26] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 09:39 run_atlas
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc       105 Jan 14 09:39 job.xml
[2026-01-14 10:34:26] -rw-r--r-- 2 boinc boinc 600916929 Jan 14 09:39 EVNT.32794306._000503.pool.root.1
[2026-01-14 10:34:26] -rw-r--r-- 2 boinc boinc    592402 Jan 14 09:39 input.tar.gz
[2026-01-14 10:34:26] -rw-r--r-- 2 boinc boinc     15847 Jan 14 09:39 start_atlas.sh
[2026-01-14 10:34:26] drwxrwx--x 2 boinc boinc      4096 Jan 14 09:39 shared
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc         0 Jan 14 09:39 boinc_setup_complete
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc      6448 Jan 14 09:39 init_data.xml
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc         0 Jan 14 09:39 boinc_lockfile
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc      2507 Jan 14 09:39 pandaJob.out
[2026-01-14 10:34:26] -rw------- 1 boinc boinc    997218 Jan 14 09:39 agis_schedconf.cvmfs.json
[2026-01-14 10:34:26] -rw------- 1 boinc boinc   1516246 Jan 14 09:39 agis_ddmendpoints.agis.ALL.json
[2026-01-14 10:34:26] drwx------ 5 boinc boinc      4096 Jan 14 09:39 pilot3
[2026-01-14 10:34:26] -rw------- 1 boinc boinc        95 Jan 14 10:33 pilot_heartbeat.json
[2026-01-14 10:34:26] -rw------- 1 boinc boinc 156278024 Jan 14 10:33 HITS.48215263._012565.pool.root.1
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc       529 Jan 14 10:33 boinc_task_state.xml
[2026-01-14 10:34:26] -rw------- 1 boinc boinc      1009 Jan 14 10:33 memory_monitor_summary.json
[2026-01-14 10:34:26] -rw------- 1 boinc boinc    232212 Jan 14 10:33 log.48215263._012565.job.log.tgz.1
[2026-01-14 10:34:26] -rw------- 1 boinc boinc      7744 Jan 14 10:34 heartbeat.json
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc      8192 Jan 14 10:34 boinc_mmap_file
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc        26 Jan 14 10:34 wrapper_checkpoint.txt
[2026-01-14 10:34:26] -rw------- 1 boinc boinc      4742 Jan 14 10:34 pilotlog.txt
[2026-01-14 10:34:26] -rw------- 1 boinc boinc    499724 Jan 14 10:34 log.48215263._012565.job.log.1
[2026-01-14 10:34:26] -rw------- 1 boinc boinc       357 Jan 14 10:34 output.list
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc       620 Jan 14 10:34 runtime_log
[2026-01-14 10:34:26] -rw------- 1 boinc boinc    747520 Jan 14 10:34 result.tar.gz
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc      8917 Jan 14 10:34 runtime_log.err
[2026-01-14 10:34:26] -rw------- 1 boinc boinc       660 Jan 14 10:34 a8NLDmWY6z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPtjKDmWj3WMn.diag
[2026-01-14 10:34:26] -rw-r--r-- 1 boinc boinc     10349 Jan 14 10:34 stderr.txt
[2026-01-14 10:34:26] HITS file was successfully produced:
[2026-01-14 10:34:26] -rw------- 1 boinc boinc 156278024 Jan 14 10:33 shared/HITS.pool.root.1
[2026-01-14 10:34:26]  *** Contents of shared directory: ***
[2026-01-14 10:34:26] total 740788
[2026-01-14 10:34:26] -rw-r--r-- 2 boinc boinc 600916929 Jan 14 09:39 ATLAS.root_0
[2026-01-14 10:34:26] -rw-r--r-- 2 boinc boinc    592402 Jan 14 09:39 input.tar.gz
[2026-01-14 10:34:26] -rw-r--r-- 2 boinc boinc     15847 Jan 14 09:39 start_atlas.sh
[2026-01-14 10:34:26] -rw------- 1 boinc boinc 156278024 Jan 14 10:33 HITS.pool.root.1
[2026-01-14 10:34:26] -rw------- 1 boinc boinc    747520 Jan 14 10:34 result.tar.gz
10:34:28 (3137441): run_atlas exited; CPU time 9216.907514
10:34:28 (3137441): called boinc_finish(0)

</stderr_txt>
]]>

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