Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:49:51 (3093440): wrapper (7.7.26015): starting
07:49:51 (3093440): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 07:49:51] Arguments: --nthreads 3
[2026-01-14 07:49:51] Threads: 3
[2026-01-14 07:49:51] Checking for CVMFS
[2026-01-14 07:49:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 07:49:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 07:49:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 07:49:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 07:49:51] 2.9.2.0 2866369 609 72664 155121 0 57 23635482 36864001 0 130560 0 613642 99.989 28859 16576 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 07:49:51] CVMFS is ok
[2026-01-14 07:49:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 07:49:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 07:49:51] Further information can be found at the LHC@home message board.
[2026-01-14 07:49:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 07:49:51] Checking for apptainer binary...
[2026-01-14 07:49:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 07:49:51] Running /usr/bin/apptainer --version
[2026-01-14 07:49:51] apptainer version 1.4.1-1.1
[2026-01-14 07:49:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 07:49:51] magicA161a
[2026-01-14 07:49:51] apptainer works
[2026-01-14 07:49:51] Set ATHENA_PROC_NUMBER=3
[2026-01-14 07:49:51] Set ATHENA_CORE_NUMBER=3
[2026-01-14 07:49:51] Starting ATLAS job with PandaID=6969271941
[2026-01-14 07:49:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 08:44:12]  *** The last 200 lines of the pilot log: ***
[2026-01-14 08:44:12] 2026-01-14 07:43:39,839 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 08:44:12] 2026-01-14 07:43:39,839 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 08:44:12] 2026-01-14 07:43:39,839 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 08:44:12] 2026-01-14 07:43:39,840 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 08:44:12] 2026-01-14 07:43:39,840 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 08:44:12] 2026-01-14 07:43:39,840 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 08:44:12] 2026-01-14 07:43:39,840 | INFO     | job 6969271941 has completed (purged errors)
[2026-01-14 08:44:12] 2026-01-14 07:43:39,840 | INFO     | overall cleanup function is called
[2026-01-14 08:44:12] 2026-01-14 07:43:40,844 | INFO     | --- collectZombieJob: --- 10, [3103610]
[2026-01-14 08:44:12] 2026-01-14 07:43:40,845 | INFO     | zombie collector waiting for pid 3103610
[2026-01-14 08:44:12] 2026-01-14 07:43:40,845 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 08:44:12] 2026-01-14 07:43:40,845 | INFO     | collected zombie processes
[2026-01-14 08:44:12] 2026-01-14 07:43:40,845 | INFO     | will attempt to kill all subprocesses of pid=3103610
[2026-01-14 08:44:12] 2026-01-14 07:43:40,888 | INFO     | process IDs to be killed: [3103610] (in reverse order)
[2026-01-14 08:44:12] 2026-01-14 07:43:40,911 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 08:44:12] 2026-01-14 07:43:40,911 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 08:44:12] 2026-01-14 07:43:40,913 | INFO     | did not find any defunct processes belonging to 3103610
[2026-01-14 08:44:12] 2026-01-14 07:43:40,914 | INFO     | did not find any defunct processes belonging to 3103610
[2026-01-14 08:44:12] 2026-01-14 07:43:40,914 | INFO     | ready for new job
[2026-01-14 08:44:12] 2026-01-14 07:43:40,914 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 08:44:12] 2026-01-14 07:43:40,914 | INFO     | ***************************************
[2026-01-14 08:44:12] 2026-01-14 07:43:40,914 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 08:44:12] 2026-01-14 07:43:40,914 | INFO     | ***************************************
[2026-01-14 08:44:12] 2026-01-14 07:43:40,915 | INFO     | 
[2026-01-14 08:44:12] 2026-01-14 07:43:40,915 | INFO     | architecture information:
[2026-01-14 08:44:12] 2026-01-14 07:43:40,915 | INFO     | executing command: cat /etc/os-release
[2026-01-14 08:44:12] 2026-01-14 07:43:40,924 | INFO     | cat /etc/os-release:
[2026-01-14 08:44:12] NAME="CentOS Linux"
[2026-01-14 08:44:12] VERSION="7 (Core)"
[2026-01-14 08:44:12] ID="centos"
[2026-01-14 08:44:12] ID_LIKE="rhel fedora"
[2026-01-14 08:44:12] VERSION_ID="7"
[2026-01-14 08:44:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 08:44:12] ANSI_COLOR="0;31"
[2026-01-14 08:44:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 08:44:12] HOME_URL="https://www.centos.org/"
[2026-01-14 08:44:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 08:44:12] 
[2026-01-14 08:44:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 08:44:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 08:44:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 08:44:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 08:44:12] 
[2026-01-14 08:44:12] 2026-01-14 07:43:40,924 | INFO     | ***************************************
[2026-01-14 08:44:12] 2026-01-14 07:43:41,427 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 08:44:12] 2026-01-14 07:43:41,438 | INFO     | sufficient remaining disk space (381028401152 B)
[2026-01-14 08:44:12] 2026-01-14 07:43:41,438 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 08:44:12] 2026-01-14 07:43:41,438 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 08:44:12] 2026-01-14 07:43:41,439 | INFO     | update_server=False
[2026-01-14 08:44:12] 2026-01-14 07:43:41,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 08:44:12] 2026-01-14 07:43:41,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 08:44:12] 2026-01-14 07:43:41,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 08:44:12] 2026-01-14 07:43:41,439 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 08:44:12] 2026-01-14 07:43:41,439 | INFO     | aborting loop
[2026-01-14 08:44:12] 2026-01-14 07:43:41,564 | INFO     | all data control threads have been joined
[2026-01-14 08:44:12] 2026-01-14 07:43:41,950 | INFO     | all payload control threads have been joined
[2026-01-14 08:44:12] 2026-01-14 07:43:42,444 | INFO     | [job] retrieve thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:42,444 | INFO     | [job] queue monitor thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:42,444 | INFO     | [job] job monitor thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:42,484 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:42,570 | INFO     | [data] control thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:42,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 08:44:12] 2026-01-14 07:43:42,577 | INFO     | all job control threads have been joined
[2026-01-14 08:44:12] 2026-01-14 07:43:42,956 | INFO     | [payload] control thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:42,970 | INFO     | [job] validate thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:43,012 | INFO     | [payload] validate_post thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:43,067 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:43,103 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:43,251 | INFO     | [payload] failed_post thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:43,582 | INFO     | [job] control thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:43,932 | INFO     | [data] copytool_in thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:44,580 | INFO     | [data] copytool_out thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:45,446 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:43:52,009 | INFO     | job.realtimelogging is not enabled
[2026-01-14 08:44:12] 2026-01-14 07:43:53,014 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 08:44:12] 2026-01-14 07:44:00,980 | INFO     | [monitor] cgroup control has ended
[2026-01-14 08:44:12] 2026-01-14 07:44:01,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140629903349568)>', '<ExcThread(monitor, started 140628864247552)>']
[2026-01-14 08:44:12] 2026-01-14 07:44:06,694 | INFO     | all workflow threads have been joined
[2026-01-14 08:44:12] 2026-01-14 07:44:06,695 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 08:44:12] 2026-01-14 07:44:06,695 | INFO     | traces error code: 0
[2026-01-14 08:44:12] 2026-01-14 07:44:06,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 08:44:12] 2026-01-14 07:44:12,528 | INFO     | PID=3097162 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 08:44:12] 2026-01-14 07:44:12,529 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 08:44:12] 2026-01-14 07:44:12,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 08:44:12] 2026-01-14 07:44:12,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 08:44:12] 2026-01-14 07:44:12,529 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 08:44:12] 2026-01-14 07:44:12,529 | INFO     | [monitor] control thread has ended
[2026-01-14 08:44:12] 2026-01-14 07:44:12,574 [wrapper] ==== pilot stdout END ====
[2026-01-14 08:44:12] 2026-01-14 07:44:12,576 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 08:44:12] 2026-01-14 07:44:12,578 [wrapper] pilotpid: 3097162
[2026-01-14 08:44:12] 2026-01-14 07:44:12,580 [wrapper] Pilot exit status: 0
[2026-01-14 08:44:12] 2026-01-14 07:44:12,587 [wrapper] pandaids: 6969271941
[2026-01-14 08:44:12] 2026-01-14 07:44:12,603 [wrapper] cleanup supervisor_pilot 3112783 3097163
[2026-01-14 08:44:12] 2026-01-14 07:44:12,605 [wrapper] Test setup, not cleaning
[2026-01-14 08:44:12] 2026-01-14 07:44:12,607 [wrapper] apfmon messages muted
[2026-01-14 08:44:12] 2026-01-14 07:44:12,609 [wrapper] ==== wrapper stdout END ====
[2026-01-14 08:44:12] 2026-01-14 07:44:12,611 [wrapper] ==== wrapper stderr END ====
[2026-01-14 08:44:12]  *** Error codes and diagnostics ***
[2026-01-14 08:44:12]     "exeErrorCode": 0,
[2026-01-14 08:44:12]     "exeErrorDiag": "",
[2026-01-14 08:44:12]     "pilotErrorCode": 0,
[2026-01-14 08:44:12]     "pilotErrorDiag": "",
[2026-01-14 08:44:12]  *** Listing of results directory ***
[2026-01-14 08:44:12] total 739588
[2026-01-14 08:44:12] -rwx------ 1 boinc boinc     36322 Jan 13 23:02 runpilot2-wrapper.sh
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:12 pilot3.tar.gz
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:20 queuedata.json
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc       100 Jan 14 07:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 08:44:12] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 07:49 run_atlas
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc       105 Jan 14 07:49 job.xml
[2026-01-14 08:44:12] -rw-r--r-- 2 boinc boinc 597190319 Jan 14 07:49 EVNT.32794306._000277.pool.root.1
[2026-01-14 08:44:12] -rw-r--r-- 2 boinc boinc    592391 Jan 14 07:49 input.tar.gz
[2026-01-14 08:44:12] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:49 start_atlas.sh
[2026-01-14 08:44:12] drwxrwx--x 2 boinc boinc      4096 Jan 14 07:49 shared
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:49 boinc_setup_complete
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc      6448 Jan 14 07:49 init_data.xml
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:49 boinc_lockfile
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc      2504 Jan 14 07:49 pandaJob.out
[2026-01-14 08:44:12] -rw------- 1 boinc boinc    997218 Jan 14 07:49 agis_schedconf.cvmfs.json
[2026-01-14 08:44:12] -rw------- 1 boinc boinc   1516246 Jan 14 07:49 agis_ddmendpoints.agis.ALL.json
[2026-01-14 08:44:12] drwx------ 5 boinc boinc      4096 Jan 14 07:49 pilot3
[2026-01-14 08:44:12] -rw------- 1 boinc boinc 154781118 Jan 14 08:43 HITS.48215263._006922.pool.root.1
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc       529 Jan 14 08:43 boinc_task_state.xml
[2026-01-14 08:44:12] -rw------- 1 boinc boinc      1009 Jan 14 08:43 memory_monitor_summary.json
[2026-01-14 08:44:12] -rw------- 1 boinc boinc    240060 Jan 14 08:43 log.48215263._006922.job.log.tgz.1
[2026-01-14 08:44:12] -rw------- 1 boinc boinc      7739 Jan 14 08:43 heartbeat.json
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc      8192 Jan 14 08:43 boinc_mmap_file
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc        26 Jan 14 08:43 wrapper_checkpoint.txt
[2026-01-14 08:44:12] -rw------- 1 boinc boinc       747 Jan 14 08:44 pilotlog.txt
[2026-01-14 08:44:12] -rw------- 1 boinc boinc        95 Jan 14 08:44 pilot_heartbeat.json
[2026-01-14 08:44:12] -rw------- 1 boinc boinc    490819 Jan 14 08:44 log.48215263._006922.job.log.1
[2026-01-14 08:44:12] -rw------- 1 boinc boinc       357 Jan 14 08:44 output.list
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc       620 Jan 14 08:44 runtime_log
[2026-01-14 08:44:12] -rw------- 1 boinc boinc    747520 Jan 14 08:44 result.tar.gz
[2026-01-14 08:44:12] -rw------- 1 boinc boinc       660 Jan 14 08:44 s4dNDmJe1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8FpKDm9AfDin.diag
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc      8917 Jan 14 08:44 runtime_log.err
[2026-01-14 08:44:12] -rw-r--r-- 1 boinc boinc     11514 Jan 14 08:44 stderr.txt
[2026-01-14 08:44:12] HITS file was successfully produced:
[2026-01-14 08:44:12] -rw------- 1 boinc boinc 154781118 Jan 14 08:43 shared/HITS.pool.root.1
[2026-01-14 08:44:12]  *** Contents of shared directory: ***
[2026-01-14 08:44:12] total 735688
[2026-01-14 08:44:12] -rw-r--r-- 2 boinc boinc 597190319 Jan 14 07:49 ATLAS.root_0
[2026-01-14 08:44:12] -rw-r--r-- 2 boinc boinc    592391 Jan 14 07:49 input.tar.gz
[2026-01-14 08:44:12] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:49 start_atlas.sh
[2026-01-14 08:44:12] -rw------- 1 boinc boinc 154781118 Jan 14 08:43 HITS.pool.root.1
[2026-01-14 08:44:12] -rw------- 1 boinc boinc    747520 Jan 14 08:44 result.tar.gz
08:44:14 (3093440): run_atlas exited; CPU time 9022.556516
08:44:14 (3093440): called boinc_finish(0)

</stderr_txt>
]]>

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