Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:44:41 (2121620): wrapper (7.7.26015): starting
12:44:41 (2121620): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 12:44:41] Arguments: --nthreads 3
[2026-01-14 12:44:41] Threads: 3
[2026-01-14 12:44:41] Checking for CVMFS
[2026-01-14 12:44:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 12:44:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 12:44:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 12:44:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 12:44:41] 2.9.2.0 1812368 871 63212 155130 2 57 20471148 36864000 0 130560 0 837620 99.990 35881 17451 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 12:44:41] CVMFS is ok
[2026-01-14 12:44:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 12:44:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 12:44:41] Further information can be found at the LHC@home message board.
[2026-01-14 12:44:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 12:44:41] Checking for apptainer binary...
[2026-01-14 12:44:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 12:44:41] Running /usr/bin/apptainer --version
[2026-01-14 12:44:41] apptainer version 1.4.2-2.1
[2026-01-14 12:44:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 12:44:41] cosA133a
[2026-01-14 12:44:41] apptainer works
[2026-01-14 12:44:41] Set ATHENA_PROC_NUMBER=3
[2026-01-14 12:44:41] Set ATHENA_CORE_NUMBER=3
[2026-01-14 12:44:41] Starting ATLAS job with PandaID=6969305725
[2026-01-14 12:44:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 13:47:58]  *** The last 200 lines of the pilot log: ***
[2026-01-14 13:47:58]  scope=mc23_13p6TeV
[2026-01-14 13:47:58]  status=None
[2026-01-14 13:47:58]  status_code=0
[2026-01-14 13:47:58]  storage_token=
[2026-01-14 13:47:58]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6969305725/log.48215263._011943.job.log.tgz.1
[2026-01-14 13:47:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/54/log.48215263._011943.job.log.tgz.1
[2026-01-14 13:47:58]  workdir=None
[2026-01-14 13:47:58] ]
[2026-01-14 13:47:58] 2026-01-14 12:46:55,382 | INFO     | transferring file log.48215263._011943.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6969305725/log.48215263._011943.job.log.tgz.1 to /local/data/boinc/
[2026-01-14 13:47:58] 2026-01-14 12:46:55,382 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6969305725/log.48215263._011943.job.log.tgz.1 /local/data/boinc/slots/0/log.48215263._0119
[2026-01-14 13:47:58] 2026-01-14 12:46:55,393 | INFO     | adding to output.list: log.48215263._011943.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/54/log.48215263._011943.job.log.tg
[2026-01-14 13:47:58] 2026-01-14 12:46:55,393 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 13:47:58] 2026-01-14 12:46:55,394 | INFO     | summary of transferred files:
[2026-01-14 13:47:58] 2026-01-14 12:46:55,394 | INFO     |  -- lfn=log.48215263._011943.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 13:47:58] 2026-01-14 12:46:55,394 | INFO     | stage-out finished correctly
[2026-01-14 13:47:58] 2026-01-14 12:46:55,839 | INFO     | time since job start (3728s) is within the limit (349056.0s)
[2026-01-14 13:47:58] 2026-01-14 12:46:57,825 | INFO     | monitor loop #288: job 0:6969305725 is in state 'finished'
[2026-01-14 13:47:58] 2026-01-14 12:46:57,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 13:47:58] 2026-01-14 12:46:57,845 | INFO     | time since job start (3730s) is within the limit (349056.0s)
[2026-01-14 13:47:58] 2026-01-14 12:46:58,007 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 13:47:58] 2026-01-14 12:46:58,863 | INFO     | job 6969305725 has state=finished
[2026-01-14 13:47:58] 2026-01-14 12:46:58,864 | INFO     | preparing for final server update for job 6969305725 in state='finished'
[2026-01-14 13:47:58] 2026-01-14 12:46:58,865 | INFO     | this job has now completed (state=finished)
[2026-01-14 13:47:58] 2026-01-14 12:46:58,866 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 13:47:58] 2026-01-14 12:46:58,866 | INFO     | log transfer has been attempted: DONE
[2026-01-14 13:47:58] 2026-01-14 12:46:58,866 | INFO     | job 6969305725 has finished - writing final server update
[2026-01-14 13:47:58] 2026-01-14 12:46:58,867 | INFO     | total number of processed events: 400 (read)
[2026-01-14 13:47:58] 2026-01-14 12:46:58,868 | INFO     | executing command: lscpu
[2026-01-14 13:47:58] 2026-01-14 12:46:58,885 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 13:47:58] 2026-01-14 12:46:59,852 | INFO     | time since job start (3732s) is within the limit (349056.0s)
[2026-01-14 13:47:58] 2026-01-14 12:47:00,328 | INFO     | monitor loop #289: job 0:6969305725 is in state 'finished'
[2026-01-14 13:47:58] 2026-01-14 12:47:00,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 13:47:58] 2026-01-14 12:47:01,858 | INFO     | time since job start (3734s) is within the limit (349056.0s)
[2026-01-14 13:47:58] 2026-01-14 12:47:02,831 | INFO     | monitor loop #290: job 0:6969305725 is in state 'finished'
[2026-01-14 13:47:58] 2026-01-14 12:47:02,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 13:47:58] 2026-01-14 12:47:02,934 | INFO     | PID=2125340 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 13:47:58] 2026-01-14 12:47:03,935 | INFO     | time since job start (3736s) is within the limit (349056.0s)
[2026-01-14 13:47:58] 2026-01-14 12:47:04,196 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 13:47:58] 2026-01-14 12:47:04,197 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4092.03225
[2026-01-14 13:47:58] 2026-01-14 12:47:04,198 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6969305725/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 13:47:58] 2026-01-14 12:47:04,198 | INFO     | extracted standard info from prmon json
[2026-01-14 13:47:58] 2026-01-14 12:47:04,199 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 13:47:58] 2026-01-14 12:47:04,199 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 13:47:58] 2026-01-14 12:47:04,199 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 13:47:58] 2026-01-14 12:47:04,199 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 13:47:58] 2026-01-14 12:47:04,199 | INFO     | fitting pss+swap vs Time
[2026-01-14 13:47:58] 2026-01-14 12:47:04,199 | INFO     | sum of square deviations: 48810217.5
[2026-01-14 13:47:58] 2026-01-14 12:47:04,199 | INFO     | sum of deviations: -5216939935.499999
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | mean x: 1768393032.5
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | mean y: 2469196.537037037
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | intersect: 189012080409.78757
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | chi2: 0.05919961005483269
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | current memory leak: -106.88 B/s (using 54 data points, chi2=0.06)
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | could have reported an average CPU frequency of 4239 MHz (6 samples)
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | ..............................
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | . Timing measurements:
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | . get job = 0 s
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | . initial setup = 1 s
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | . payload setup = 5 s
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | . stage-in = 0 s
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | . payload execution = 3703 s
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | . stage-out = 0 s
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | . log creation = 0 s
[2026-01-14 13:47:58] 2026-01-14 12:47:04,200 | INFO     | ..............................
[2026-01-14 13:47:58] 2026-01-14 12:47:04,475 | INFO     | 
[2026-01-14 13:47:58] 2026-01-14 12:47:04,475 | INFO     | job summary report
[2026-01-14 13:47:58] 2026-01-14 12:47:04,475 | INFO     | --------------------------------------------------
[2026-01-14 13:47:58] 2026-01-14 12:47:04,476 | INFO     | PanDA job id: 6969305725
[2026-01-14 13:47:58] 2026-01-14 12:47:04,476 | INFO     | task id: 48215263
[2026-01-14 13:47:58] 2026-01-14 12:47:04,476 | INFO     | errors: (none)
[2026-01-14 13:47:58] 2026-01-14 12:47:04,476 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 13:47:58] 2026-01-14 12:47:04,476 | INFO     | pilot state: finished 
[2026-01-14 13:47:58] 2026-01-14 12:47:04,476 | INFO     | transexitcode: 0
[2026-01-14 13:47:58] 2026-01-14 12:47:04,476 | INFO     | exeerrorcode: 0
[2026-01-14 13:47:58] 2026-01-14 12:47:04,477 | INFO     | exeerrordiag: 
[2026-01-14 13:47:58] 2026-01-14 12:47:04,477 | INFO     | exitcode: 0
[2026-01-14 13:47:58] 2026-01-14 12:47:04,477 | INFO     | exitmsg: OK
[2026-01-14 13:47:58] 2026-01-14 12:47:04,477 | INFO     | cpuconsumptiontime: 10499 s
[2026-01-14 13:47:58] 2026-01-14 12:47:04,477 | INFO     | nevents: 400
[2026-01-14 13:47:58] 2026-01-14 12:47:04,477 | INFO     | neventsw: 0
[2026-01-14 13:47:58] 2026-01-14 12:47:04,477 | INFO     | pid: 2131795
[2026-01-14 13:47:58] 2026-01-14 12:47:04,478 | INFO     | pgrp: 2131795
[2026-01-14 13:47:58] 2026-01-14 12:47:04,478 | INFO     | corecount: 3
[2026-01-14 13:47:58] 2026-01-14 12:47:04,478 | INFO     | event service: False
[2026-01-14 13:47:58] 2026-01-14 12:47:04,478 | INFO     | sizes: {0: 2283780, 1: 2283979, 5: 2284241, 11: 2284297, 3712: 2310137, 3713: 2319141, 3716: 2319325, 3722: 2319519}
[2026-01-14 13:47:58] 2026-01-14 12:47:04,478 | INFO     | --------------------------------------------------
[2026-01-14 13:47:58] 2026-01-14 12:47:04,478 | INFO     | 
[2026-01-14 13:47:58] 2026-01-14 12:47:04,479 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-14 13:47:58] 2026-01-14 12:47:04,491 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | job 6969305725 has completed (purged errors)
[2026-01-14 13:47:58] 2026-01-14 12:47:04,492 | INFO     | overall cleanup function is called
[2026-01-14 13:47:58] 2026-01-14 12:47:05,499 | INFO     | --- collectZombieJob: --- 10, [2131795]
[2026-01-14 13:47:58] 2026-01-14 12:47:05,499 | INFO     | zombie collector waiting for pid 2131795
[2026-01-14 13:47:58] 2026-01-14 12:47:05,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 13:47:58] 2026-01-14 12:47:05,499 | INFO     | collected zombie processes
[2026-01-14 13:47:58] 2026-01-14 12:47:05,499 | INFO     | will attempt to kill all subprocesses of pid=2131795
[2026-01-14 13:47:58] 2026-01-14 12:47:05,538 | INFO     | process IDs to be killed: [2131795] (in reverse order)
[2026-01-14 13:47:58] 2026-01-14 12:47:05,562 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 13:47:58] 2026-01-14 12:47:05,562 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 13:47:58] 2026-01-14 12:47:05,563 | INFO     | did not find any defunct processes belonging to 2131795
[2026-01-14 13:47:58] 2026-01-14 12:47:05,564 | INFO     | did not find any defunct processes belonging to 2131795
[2026-01-14 13:47:58] 2026-01-14 12:47:05,564 | INFO     | ready for new job
[2026-01-14 13:47:58] 2026-01-14 12:47:05,564 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 13:47:58] 2026-01-14 12:47:05,564 | INFO     | ***************************************
[2026-01-14 13:47:58] 2026-01-14 12:47:05,564 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 13:47:58] 2026-01-14 12:47:05,564 | INFO     | ***************************************
[2026-01-14 13:47:58] 2026-01-14 12:47:05,564 | INFO     | 
[2026-01-14 13:47:58] 2026-01-14 12:47:05,565 | INFO     | architecture information:
[2026-01-14 13:47:58] 2026-01-14 12:47:05,565 | INFO     | executing command: cat /etc/os-release
[2026-01-14 13:47:58] 2026-01-14 12:47:05,573 | INFO     | cat /etc/os-release:
[2026-01-14 13:47:58] NAME="CentOS Linux"
[2026-01-14 13:47:58] VERSION="7 (Core)"
[2026-01-14 13:47:58] ID="centos"
[2026-01-14 13:47:58] ID_LIKE="rhel fedora"
[2026-01-14 13:47:58] VERSION_ID="7"
[2026-01-14 13:47:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 13:47:58] ANSI_COLOR="0;31"
[2026-01-14 13:47:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 13:47:58] HOME_URL="https://www.centos.org/"
[2026-01-14 13:47:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 13:47:58] 
[2026-01-14 13:47:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 13:47:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 13:47:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 13:47:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 13:47:58] 
[2026-01-14 13:47:58] 2026-01-14 12:47:05,574 | INFO     | ***************************************
[2026-01-14 13:47:58] 2026-01-14 12:47:06,077 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 13:47:58] 2026-01-14 12:47:06,090 | INFO     | sufficient remaining disk space (337023860736 B)
[2026-01-14 13:47:58] 2026-01-14 12:47:06,090 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 13:47:58] 2026-01-14 12:47:06,090 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 13:47:58] 2026-01-14 12:47:06,090 | INFO     | update_server=False
[2026-01-14 13:47:58] 2026-01-14 12:47:06,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 13:47:58] 2026-01-14 12:47:06,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 13:47:58] 2026-01-14 12:47:06,091 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 13:47:58] 2026-01-14 12:47:06,340 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 13:47:58] 2026-01-14 12:47:06,341 | INFO     | aborting loop
[2026-01-14 13:47:58] 2026-01-14 12:47:06,481 | INFO     | all data control threads have been joined
[2026-01-14 13:47:58] 2026-01-14 12:47:06,666 | INFO     | all job control threads have been joined
[2026-01-14 13:47:58] 2026-01-14 12:47:07,096 | INFO     | [job] retrieve thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:07,097 | INFO     | [job] queue monitor thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:07,117 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:07,193 | INFO     | [job] validate thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:07,281 | INFO     | all payload control threads have been joined
[2026-01-14 13:47:58] 2026-01-14 12:47:07,322 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:07,347 | INFO     | [job] job monitor thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:07,463 | INFO     | [data] copytool_in thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:07,487 | INFO     | [data] control thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:07,672 | INFO     | [job] control thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:08,097 | INFO     | [data] copytool_out thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:08,147 | INFO     | [payload] failed_post thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:08,287 | INFO     | [payload] control thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:08,448 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:08,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 13:47:58] 2026-01-14 12:47:08,673 | INFO     | [payload] validate_post thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:12,556 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:16,742 | INFO     | job.realtimelogging is not enabled
[2026-01-14 13:47:58] 2026-01-14 12:47:17,748 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 13:47:58] 2026-01-14 12:47:35,997 | INFO     | 3739s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-14 13:47:58] 2026-01-14 12:47:37,088 | INFO     | PID=2125340 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 13:47:58] 2026-01-14 12:47:37,088 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 13:47:58] 2026-01-14 12:47:37,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 13:47:58] 2026-01-14 12:47:37,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 13:47:58] 2026-01-14 12:47:51,873 | INFO     | [monitor] cgroup control has ended
[2026-01-14 13:47:58] 2026-01-14 12:47:53,102 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139953254836032)>', '<ExcThread(monitor, started 139952381753088)>']
[2026-01-14 13:47:58] 2026-01-14 12:47:53,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 13:47:58] 2026-01-14 12:47:53,172 | INFO     | [monitor] control thread has ended
[2026-01-14 13:47:58] 2026-01-14 12:47:58,128 | INFO     | all workflow threads have been joined
[2026-01-14 13:47:58] 2026-01-14 12:47:58,129 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 13:47:58] 2026-01-14 12:47:58,129 | INFO     | traces error code: 0
[2026-01-14 13:47:58] 2026-01-14 12:47:58,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 13:47:58] 2026-01-14 12:47:58,175 [wrapper] ==== pilot stdout END ====
[2026-01-14 13:47:58] 2026-01-14 12:47:58,179 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 13:47:58] 2026-01-14 12:47:58,182 [wrapper] pilotpid: 2125340
[2026-01-14 13:47:58] 2026-01-14 12:47:58,184 [wrapper] Pilot exit status: 0
[2026-01-14 13:47:58] 2026-01-14 12:47:58,193 [wrapper] pandaids: 6969305725
[2026-01-14 13:47:58] 2026-01-14 12:47:58,210 [wrapper] cleanup supervisor_pilot 2141188 2125341
[2026-01-14 13:47:58] 2026-01-14 12:47:58,213 [wrapper] Test setup, not cleaning
[2026-01-14 13:47:58] 2026-01-14 12:47:58,216 [wrapper] apfmon messages muted
[2026-01-14 13:47:58] 2026-01-14 12:47:58,219 [wrapper] ==== wrapper stdout END ====
[2026-01-14 13:47:58] 2026-01-14 12:47:58,222 [wrapper] ==== wrapper stderr END ====
[2026-01-14 13:47:58]  *** Error codes and diagnostics ***
[2026-01-14 13:47:58]     "exeErrorCode": 0,
[2026-01-14 13:47:58]     "exeErrorDiag": "",
[2026-01-14 13:47:58]     "pilotErrorCode": 0,
[2026-01-14 13:47:58]     "pilotErrorDiag": "",
[2026-01-14 13:47:58]  *** Listing of results directory ***
[2026-01-14 13:47:58] total 741016
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc    579449 Jan 14 02:50 pilot3.tar.gz
[2026-01-14 13:47:58] -rwx------ 1 boinc boinc     36322 Jan 14 02:54 runpilot2-wrapper.sh
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc      5112 Jan 14 02:57 queuedata.json
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc       100 Jan 14 12:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 13:47:58] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 12:44 run_atlas
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc       105 Jan 14 12:44 job.xml
[2026-01-14 13:47:58] -rw-r--r-- 2 boinc boinc 596504451 Jan 14 12:44 EVNT.32794306._000478.pool.root.1
[2026-01-14 13:47:58] -rw-r--r-- 2 boinc boinc    592395 Jan 14 12:44 input.tar.gz
[2026-01-14 13:47:58] -rw-r--r-- 2 boinc boinc     15847 Jan 14 12:44 start_atlas.sh
[2026-01-14 13:47:58] drwxrwx--x 2 boinc boinc      4096 Jan 14 12:44 shared
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc         0 Jan 14 12:44 boinc_setup_complete
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc      6274 Jan 14 12:44 init_data.xml
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc         0 Jan 14 12:44 boinc_lockfile
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc      2506 Jan 14 12:44 pandaJob.out
[2026-01-14 13:47:58] -rw------- 1 boinc boinc    997566 Jan 14 12:44 agis_schedconf.cvmfs.json
[2026-01-14 13:47:58] -rw------- 1 boinc boinc   1516246 Jan 14 12:44 agis_ddmendpoints.agis.ALL.json
[2026-01-14 13:47:58] drwx------ 5 boinc boinc      4096 Jan 14 12:44 pilot3
[2026-01-14 13:47:58] -rw------- 1 boinc boinc 156776042 Jan 14 13:46 HITS.48215263._011943.pool.root.1
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc       530 Jan 14 13:46 boinc_task_state.xml
[2026-01-14 13:47:58] -rw------- 1 boinc boinc      1015 Jan 14 13:46 memory_monitor_summary.json
[2026-01-14 13:47:58] -rw------- 1 boinc boinc    239804 Jan 14 13:46 log.48215263._011943.job.log.tgz.1
[2026-01-14 13:47:58] -rw------- 1 boinc boinc      7763 Jan 14 13:47 heartbeat.json
[2026-01-14 13:47:58] -rw------- 1 boinc boinc        95 Jan 14 13:47 pilot_heartbeat.json
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc      8192 Jan 14 13:47 boinc_mmap_file
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc        27 Jan 14 13:47 wrapper_checkpoint.txt
[2026-01-14 13:47:58] -rw------- 1 boinc boinc      4939 Jan 14 13:47 pilotlog.txt
[2026-01-14 13:47:58] -rw------- 1 boinc boinc    563649 Jan 14 13:47 log.48215263._011943.job.log.1
[2026-01-14 13:47:58] -rw------- 1 boinc boinc       357 Jan 14 13:47 output.list
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc       620 Jan 14 13:47 runtime_log
[2026-01-14 13:47:58] -rw------- 1 boinc boinc    819200 Jan 14 13:47 result.tar.gz
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc      8907 Jan 14 13:47 runtime_log.err
[2026-01-14 13:47:58] -rw------- 1 boinc boinc       660 Jan 14 13:47 Pc1NDmjG5z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5ejKDmKAn66m.diag
[2026-01-14 13:47:58] -rw-r--r-- 1 boinc boinc     22094 Jan 14 13:47 stderr.txt
[2026-01-14 13:47:58] HITS file was successfully produced:
[2026-01-14 13:47:58] -rw------- 1 boinc boinc 156776042 Jan 14 13:46 shared/HITS.pool.root.1
[2026-01-14 13:47:58]  *** Contents of shared directory: ***
[2026-01-14 13:47:58] total 737028
[2026-01-14 13:47:58] -rw-r--r-- 2 boinc boinc 596504451 Jan 14 12:44 ATLAS.root_0
[2026-01-14 13:47:58] -rw-r--r-- 2 boinc boinc    592395 Jan 14 12:44 input.tar.gz
[2026-01-14 13:47:58] -rw-r--r-- 2 boinc boinc     15847 Jan 14 12:44 start_atlas.sh
[2026-01-14 13:47:58] -rw------- 1 boinc boinc 156776042 Jan 14 13:46 HITS.pool.root.1
[2026-01-14 13:47:58] -rw------- 1 boinc boinc    819200 Jan 14 13:47 result.tar.gz
13:47:59 (2121620): run_atlas exited; CPU time 10516.686721
13:47:59 (2121620): called boinc_finish(0)

</stderr_txt>
]]>

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