Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:17:11 (3304252): wrapper (7.7.26015): starting
07:17:11 (3304252): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 07:17:11] Arguments: --nthreads 3
[2026-01-14 07:17:11] Threads: 3
[2026-01-14 07:17:11] Checking for CVMFS
[2026-01-14 07:17:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 07:17:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 07:17:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 07:17:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 07:17:12] 2.9.2.0 3128188 456 66472 155121 0 56 20926431 36864000 0 130560 0 482052 99.991 21915 16113 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 07:17:12] CVMFS is ok
[2026-01-14 07:17:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 07:17:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 07:17:12] Further information can be found at the LHC@home message board.
[2026-01-14 07:17:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 07:17:12] Checking for apptainer binary...
[2026-01-14 07:17:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 07:17:12] Running /usr/bin/apptainer --version
[2026-01-14 07:17:12] apptainer version 1.4.1-1.1
[2026-01-14 07:17:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 07:17:12] thA327
[2026-01-14 07:17:12] apptainer works
[2026-01-14 07:17:12] Set ATHENA_PROC_NUMBER=3
[2026-01-14 07:17:12] Set ATHENA_CORE_NUMBER=3
[2026-01-14 07:17:12] Starting ATLAS job with PandaID=6969271854
[2026-01-14 07:17:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 08:11:26]  *** The last 200 lines of the pilot log: ***
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | job 6969271854 has completed (purged errors)
[2026-01-14 08:11:26] 2026-01-14 07:10:52,407 | INFO     | overall cleanup function is called
[2026-01-14 08:11:26] 2026-01-14 07:10:53,414 | INFO     | --- collectZombieJob: --- 10, [3314420]
[2026-01-14 08:11:26] 2026-01-14 07:10:53,414 | INFO     | zombie collector waiting for pid 3314420
[2026-01-14 08:11:26] 2026-01-14 07:10:53,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 08:11:26] 2026-01-14 07:10:53,414 | INFO     | collected zombie processes
[2026-01-14 08:11:26] 2026-01-14 07:10:53,415 | INFO     | will attempt to kill all subprocesses of pid=3314420
[2026-01-14 08:11:26] 2026-01-14 07:10:53,457 | INFO     | process IDs to be killed: [3314420] (in reverse order)
[2026-01-14 08:11:26] 2026-01-14 07:10:53,480 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 08:11:26] 2026-01-14 07:10:53,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 08:11:26] 2026-01-14 07:10:53,482 | INFO     | did not find any defunct processes belonging to 3314420
[2026-01-14 08:11:26] 2026-01-14 07:10:53,483 | INFO     | did not find any defunct processes belonging to 3314420
[2026-01-14 08:11:26] 2026-01-14 07:10:53,483 | INFO     | ready for new job
[2026-01-14 08:11:26] 2026-01-14 07:10:53,483 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 08:11:26] 2026-01-14 07:10:53,483 | INFO     | ***************************************
[2026-01-14 08:11:26] 2026-01-14 07:10:53,484 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 08:11:26] 2026-01-14 07:10:53,484 | INFO     | ***************************************
[2026-01-14 08:11:26] 2026-01-14 07:10:53,484 | INFO     | 
[2026-01-14 08:11:26] 2026-01-14 07:10:53,484 | INFO     | architecture information:
[2026-01-14 08:11:26] 2026-01-14 07:10:53,484 | INFO     | executing command: cat /etc/os-release
[2026-01-14 08:11:26] 2026-01-14 07:10:53,492 | INFO     | cat /etc/os-release:
[2026-01-14 08:11:26] NAME="CentOS Linux"
[2026-01-14 08:11:26] VERSION="7 (Core)"
[2026-01-14 08:11:26] ID="centos"
[2026-01-14 08:11:26] ID_LIKE="rhel fedora"
[2026-01-14 08:11:26] VERSION_ID="7"
[2026-01-14 08:11:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 08:11:26] ANSI_COLOR="0;31"
[2026-01-14 08:11:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 08:11:26] HOME_URL="https://www.centos.org/"
[2026-01-14 08:11:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 08:11:26] 
[2026-01-14 08:11:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 08:11:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 08:11:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 08:11:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 08:11:26] 
[2026-01-14 08:11:26] 2026-01-14 07:10:53,493 | INFO     | ***************************************
[2026-01-14 08:11:26] 2026-01-14 07:10:53,996 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 08:11:26] 2026-01-14 07:10:54,009 | INFO     | sufficient remaining disk space (383815516160 B)
[2026-01-14 08:11:26] 2026-01-14 07:10:54,009 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 08:11:26] 2026-01-14 07:10:54,009 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 08:11:26] 2026-01-14 07:10:54,009 | INFO     | update_server=False
[2026-01-14 08:11:26] 2026-01-14 07:10:54,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 08:11:26] 2026-01-14 07:10:54,009 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-14 08:11:26] 2026-01-14 07:10:54,009 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 08:11:26] 2026-01-14 07:10:54,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 08:11:26] 2026-01-14 07:10:54,009 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 08:11:26] 2026-01-14 07:10:54,010 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 08:11:26] 2026-01-14 07:10:54,010 | INFO     | aborting loop
[2026-01-14 08:11:26] 2026-01-14 07:10:54,010 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 08:11:26] 2026-01-14 07:10:54,010 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 08:11:26] 2026-01-14 07:10:54,570 | INFO     | all data control threads have been joined
[2026-01-14 08:11:26] 2026-01-14 07:10:54,825 | INFO     | all job control threads have been joined
[2026-01-14 08:11:26] 2026-01-14 07:10:55,015 | INFO     | [job] retrieve thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:55,015 | INFO     | [job] queue monitor thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:55,015 | INFO     | [job] job monitor thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:55,127 | INFO     | all payload control threads have been joined
[2026-01-14 08:11:26] 2026-01-14 07:10:55,490 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:55,509 | INFO     | [data] copytool_in thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:55,576 | INFO     | [data] control thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:55,801 | INFO     | [payload] failed_post thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:55,831 | INFO     | [job] control thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:56,014 | INFO     | [job] validate thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:56,015 | INFO     | [data] copytool_out thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:56,104 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:56,111 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:56,132 | INFO     | [payload] control thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:56,335 | INFO     | [payload] validate_post thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:10:56,528 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 08:11:26] 2026-01-14 07:11:00,535 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:11:04,861 | INFO     | job.realtimelogging is not enabled
[2026-01-14 08:11:26] 2026-01-14 07:11:05,866 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 08:11:26] 2026-01-14 07:11:21,157 | INFO     | [monitor] cgroup control has ended
[2026-01-14 08:11:26] 2026-01-14 07:11:21,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139733466982208)>', '<ExcThread(monitor, started 139732977698560)>']
[2026-01-14 08:11:26] 2026-01-14 07:11:22,156 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 08:11:26] 2026-01-14 07:11:22,156 | INFO     | [monitor] control thread has ended
[2026-01-14 08:11:26] 2026-01-14 07:11:26,339 | INFO     | all workflow threads have been joined
[2026-01-14 08:11:26] 2026-01-14 07:11:26,339 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 08:11:26] 2026-01-14 07:11:26,339 | INFO     | traces error code: 0
[2026-01-14 08:11:26] 2026-01-14 07:11:26,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 08:11:26] 2026-01-14 07:11:26,389 [wrapper] ==== pilot stdout END ====
[2026-01-14 08:11:26] 2026-01-14 07:11:26,392 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 08:11:26] 2026-01-14 07:11:26,394 [wrapper] pilotpid: 3307972
[2026-01-14 08:11:26] 2026-01-14 07:11:26,397 [wrapper] Pilot exit status: 0
[2026-01-14 08:11:26] 2026-01-14 07:11:26,404 [wrapper] pandaids: 6969271854
[2026-01-14 08:11:26] 2026-01-14 07:11:26,420 [wrapper] cleanup supervisor_pilot 3323581 3307973
[2026-01-14 08:11:26] 2026-01-14 07:11:26,422 [wrapper] Test setup, not cleaning
[2026-01-14 08:11:26] 2026-01-14 07:11:26,425 [wrapper] apfmon messages muted
[2026-01-14 08:11:26] 2026-01-14 07:11:26,427 [wrapper] ==== wrapper stdout END ====
[2026-01-14 08:11:26] 2026-01-14 07:11:26,429 [wrapper] ==== wrapper stderr END ====
[2026-01-14 08:11:26]  *** Error codes and diagnostics ***
[2026-01-14 08:11:26]     "exeErrorCode": 0,
[2026-01-14 08:11:26]     "exeErrorDiag": "",
[2026-01-14 08:11:26]     "pilotErrorCode": 0,
[2026-01-14 08:11:26]     "pilotErrorDiag": "",
[2026-01-14 08:11:26]  *** Listing of results directory ***
[2026-01-14 08:11:26] total 731224
[2026-01-14 08:11:26] -rwx------ 1 boinc boinc     36322 Jan 13 23:02 runpilot2-wrapper.sh
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:12 pilot3.tar.gz
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:16 queuedata.json
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc       100 Jan 14 07:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 08:11:26] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 07:17 run_atlas
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc       105 Jan 14 07:17 job.xml
[2026-01-14 08:11:26] -rw-r--r-- 2 boinc boinc 596109432 Jan 14 07:17 EVNT.32794306._000274.pool.root.1
[2026-01-14 08:11:26] -rw-r--r-- 2 boinc boinc    592394 Jan 14 07:17 input.tar.gz
[2026-01-14 08:11:26] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:17 start_atlas.sh
[2026-01-14 08:11:26] drwxrwx--x 2 boinc boinc      4096 Jan 14 07:17 shared
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:17 boinc_setup_complete
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc      6446 Jan 14 07:17 init_data.xml
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:17 boinc_lockfile
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc      2504 Jan 14 07:17 pandaJob.out
[2026-01-14 08:11:26] -rw------- 1 boinc boinc    997218 Jan 14 07:17 agis_schedconf.cvmfs.json
[2026-01-14 08:11:26] -rw------- 1 boinc boinc   1516246 Jan 14 07:17 agis_ddmendpoints.agis.ALL.json
[2026-01-14 08:11:26] drwx------ 5 boinc boinc      4096 Jan 14 07:17 pilot3
[2026-01-14 08:11:26] -rw------- 1 boinc boinc 147319058 Jan 14 08:10 HITS.48215263._006835.pool.root.1
[2026-01-14 08:11:26] -rw------- 1 boinc boinc        95 Jan 14 08:10 pilot_heartbeat.json
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc       529 Jan 14 08:10 boinc_task_state.xml
[2026-01-14 08:11:26] -rw------- 1 boinc boinc      1012 Jan 14 08:10 memory_monitor_summary.json
[2026-01-14 08:11:26] -rw------- 1 boinc boinc    224118 Jan 14 08:10 log.48215263._006835.job.log.tgz.1
[2026-01-14 08:11:26] -rw------- 1 boinc boinc      7729 Jan 14 08:10 heartbeat.json
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc        26 Jan 14 08:11 wrapper_checkpoint.txt
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc      8192 Jan 14 08:11 boinc_mmap_file
[2026-01-14 08:11:26] -rw------- 1 boinc boinc      4628 Jan 14 08:11 pilotlog.txt
[2026-01-14 08:11:26] -rw------- 1 boinc boinc    489918 Jan 14 08:11 log.48215263._006835.job.log.1
[2026-01-14 08:11:26] -rw------- 1 boinc boinc       357 Jan 14 08:11 output.list
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc       620 Jan 14 08:11 runtime_log
[2026-01-14 08:11:26] -rw------- 1 boinc boinc    737280 Jan 14 08:11 result.tar.gz
[2026-01-14 08:11:26] -rw------- 1 boinc boinc       656 Jan 14 08:11 wYPKDm9d1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUziKDmEbRrOm.diag
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc      8897 Jan 14 08:11 runtime_log.err
[2026-01-14 08:11:26] -rw-r--r-- 1 boinc boinc     12363 Jan 14 08:11 stderr.txt
[2026-01-14 08:11:26] HITS file was successfully produced:
[2026-01-14 08:11:26] -rw------- 1 boinc boinc 147319058 Jan 14 08:10 shared/HITS.pool.root.1
[2026-01-14 08:11:26]  *** Contents of shared directory: ***
[2026-01-14 08:11:26] total 727332
[2026-01-14 08:11:26] -rw-r--r-- 2 boinc boinc 596109432 Jan 14 07:17 ATLAS.root_0
[2026-01-14 08:11:26] -rw-r--r-- 2 boinc boinc    592394 Jan 14 07:17 input.tar.gz
[2026-01-14 08:11:26] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:17 start_atlas.sh
[2026-01-14 08:11:26] -rw------- 1 boinc boinc 147319058 Jan 14 08:10 HITS.pool.root.1
[2026-01-14 08:11:26] -rw------- 1 boinc boinc    737280 Jan 14 08:11 result.tar.gz
08:11:28 (3304252): run_atlas exited; CPU time 9004.039005
08:11:28 (3304252): called boinc_finish(0)

</stderr_txt>
]]>

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