Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:17:33 (1889715): wrapper (7.7.26015): starting
02:17:33 (1889715): wrapper: running run_atlas (--nthreads 8)
[2026-01-14 02:17:33] Arguments: --nthreads 8
[2026-01-14 02:17:33] Threads: 8
[2026-01-14 02:17:33] Checking for CVMFS
[2026-01-14 02:17:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 02:17:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 02:17:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 02:17:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 02:17:35] 2.13.3.0 12563 29799 286456 155123 3 16 39243734 40960000 23202 16776704 0 40834480 99.761 21193940 32885 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-14 02:17:35] CVMFS is ok
[2026-01-14 02:17:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 02:17:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 02:17:35] Further information can be found at the LHC@home message board.
[2026-01-14 02:17:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 02:17:35] Checking for apptainer binary...
[2026-01-14 02:17:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 02:17:35] Running /usr/bin/apptainer --version
[2026-01-14 02:17:35] apptainer version 1.4.5-2.el9
[2026-01-14 02:17:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 02:17:36] c-211-33-3.aglt2.org
[2026-01-14 02:17:36] apptainer works
[2026-01-14 02:17:36] Set ATHENA_PROC_NUMBER=8
[2026-01-14 02:17:36] Set ATHENA_CORE_NUMBER=8
[2026-01-14 02:17:36] Starting ATLAS job with PandaID=6969280792
[2026-01-14 02:17:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 03:38:58]  *** The last 200 lines of the pilot log: ***
[2026-01-14 03:38:58] 2026-01-14 08:38:04,445 | INFO     | time since job start (4777s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:05,997 | INFO     | monitor loop #341: job 0:6969280792 is in state 'finished'
[2026-01-14 03:38:58] 2026-01-14 08:38:05,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 03:38:58] 2026-01-14 08:38:06,452 | INFO     | time since job start (4779s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:06,518 | INFO     | job 6969280792 has state=finished
[2026-01-14 03:38:58] 2026-01-14 08:38:06,519 | INFO     | preparing for final server update for job 6969280792 in state='finished'
[2026-01-14 03:38:58] 2026-01-14 08:38:06,519 | INFO     | this job has now completed (state=finished)
[2026-01-14 03:38:58] 2026-01-14 08:38:06,519 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 03:38:58] 2026-01-14 08:38:06,519 | INFO     | log transfer has been attempted: DONE
[2026-01-14 03:38:58] 2026-01-14 08:38:06,519 | INFO     | job 6969280792 has finished - writing final server update
[2026-01-14 03:38:58] 2026-01-14 08:38:06,520 | INFO     | total number of processed events: 400 (read)
[2026-01-14 03:38:58] 2026-01-14 08:38:06,568 | INFO     | executing command: lscpu
[2026-01-14 03:38:58] 2026-01-14 08:38:06,767 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 03:38:58] 2026-01-14 08:38:08,460 | INFO     | time since job start (4781s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:08,502 | INFO     | monitor loop #342: job 0:6969280792 is in state 'finished'
[2026-01-14 03:38:58] 2026-01-14 08:38:08,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 03:38:58] 2026-01-14 08:38:10,471 | INFO     | time since job start (4783s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:11,007 | INFO     | monitor loop #343: job 0:6969280792 is in state 'finished'
[2026-01-14 03:38:58] 2026-01-14 08:38:11,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 03:38:58] 2026-01-14 08:38:12,478 | INFO     | time since job start (4785s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:13,512 | INFO     | monitor loop #344: job 0:6969280792 is in state 'finished'
[2026-01-14 03:38:58] 2026-01-14 08:38:13,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 03:38:58] 2026-01-14 08:38:14,485 | INFO     | time since job start (4787s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:16,054 | INFO     | monitor loop #345: job 0:6969280792 is in state 'finished'
[2026-01-14 03:38:58] 2026-01-14 08:38:16,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 03:38:58] 2026-01-14 08:38:16,289 | INFO     | PID=1893724 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 03:38:58] 2026-01-14 08:38:16,289 | INFO     | .. there are 17 such processes running
[2026-01-14 03:38:58] 2026-01-14 08:38:17,290 | INFO     | time since job start (4790s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:18,559 | INFO     | monitor loop #346: job 0:6969280792 is in state 'finished'
[2026-01-14 03:38:58] 2026-01-14 08:38:18,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 03:38:58] 2026-01-14 08:38:19,297 | INFO     | time since job start (4792s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:21,064 | INFO     | monitor loop #347: job 0:6969280792 is in state 'finished'
[2026-01-14 03:38:58] 2026-01-14 08:38:21,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 03:38:58] 2026-01-14 08:38:21,304 | INFO     | time since job start (4794s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:23,311 | INFO     | time since job start (4796s) is within the limit (349056.0s)
[2026-01-14 03:38:58] 2026-01-14 08:38:23,569 | INFO     | monitor loop #348: job 0:6969280792 is in state 'finished'
[2026-01-14 03:38:58] 2026-01-14 08:38:23,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 03:38:58] 2026-01-14 08:38:23,968 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-14 03:38:58] 2026-01-14 08:38:23,985 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2704.510312500001
[2026-01-14 03:38:58] 2026-01-14 08:38:24,002 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6969280792/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 03:38:58] 2026-01-14 08:38:24,007 | INFO     | extracted standard info from prmon json
[2026-01-14 03:38:58] 2026-01-14 08:38:24,007 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 03:38:58] 2026-01-14 08:38:24,007 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 03:38:58] 2026-01-14 08:38:24,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 03:38:58] 2026-01-14 08:38:24,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 03:38:58] 2026-01-14 08:38:24,010 | INFO     | fitting pss+swap vs Time
[2026-01-14 03:38:58] 2026-01-14 08:38:24,011 | INFO     | sum of square deviations: 106334887.94285718
[2026-01-14 03:38:58] 2026-01-14 08:38:24,011 | INFO     | sum of deviations: -13160503674.742855
[2026-01-14 03:38:58] 2026-01-14 08:38:24,011 | INFO     | mean x: 1768377636.8285713
[2026-01-14 03:38:58] 2026-01-14 08:38:24,011 | INFO     | mean y: 2759156.2714285715
[2026-01-14 03:38:58] 2026-01-14 08:38:24,011 | INFO     | intersect: 218865456414.4087
[2026-01-14 03:38:58] 2026-01-14 08:38:24,015 | INFO     | chi2: 0.10669464892021373
[2026-01-14 03:38:58] 2026-01-14 08:38:24,015 | INFO     | current memory leak: -123.76 B/s (using 70 data points, chi2=0.11)
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | could have reported an average CPU frequency of 2727 MHz (6 samples)
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | ..............................
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | . Timing measurements:
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | . get job = 0 s
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | . initial setup = 4 s
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | . payload setup = 37 s
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | . stage-in = 0 s
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | . payload execution = 4670 s
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | . stage-out = 1 s
[2026-01-14 03:38:58] 2026-01-14 08:38:24,016 | INFO     | . log creation = 0 s
[2026-01-14 03:38:58] 2026-01-14 08:38:24,017 | INFO     | ..............................
[2026-01-14 03:38:58] 2026-01-14 08:38:24,236 | INFO     | 
[2026-01-14 03:38:58] 2026-01-14 08:38:24,236 | INFO     | job summary report
[2026-01-14 03:38:58] 2026-01-14 08:38:24,236 | INFO     | --------------------------------------------------
[2026-01-14 03:38:58] 2026-01-14 08:38:24,236 | INFO     | PanDA job id: 6969280792
[2026-01-14 03:38:58] 2026-01-14 08:38:24,236 | INFO     | task id: 48215263
[2026-01-14 03:38:58] 2026-01-14 08:38:24,236 | INFO     | errors: (none)
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | pilot state: finished 
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | transexitcode: 0
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | exeerrorcode: 0
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | exeerrordiag: 
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | exitcode: 0
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | exitmsg: OK
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | cpuconsumptiontime: 25459 s
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | nevents: 400
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | neventsw: 0
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | pid: 1903877
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | pgrp: 1903877
[2026-01-14 03:38:58] 2026-01-14 08:38:24,237 | INFO     | corecount: 8
[2026-01-14 03:38:58] 2026-01-14 08:38:24,238 | INFO     | event service: False
[2026-01-14 03:38:58] 2026-01-14 08:38:24,238 | INFO     | sizes: {0: 2283722, 1: 2283806, 2: 2284005, 13: 2284005, 23: 2284061, 26: 2284351, 35: 2284507, 4712: 2310665, 4716: 2319663, 4719: 2319719, 4740: 2319913}
[2026-01-14 03:38:58] 2026-01-14 08:38:24,238 | INFO     | --------------------------------------------------
[2026-01-14 03:38:58] 2026-01-14 08:38:24,238 | INFO     | 
[2026-01-14 03:38:58] 2026-01-14 08:38:24,238 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | job 6969280792 has completed (purged errors)
[2026-01-14 03:38:58] 2026-01-14 08:38:24,279 | INFO     | overall cleanup function is called
[2026-01-14 03:38:58] 2026-01-14 08:38:25,289 | INFO     | --- collectZombieJob: --- 10, [1903877]
[2026-01-14 03:38:58] 2026-01-14 08:38:25,290 | INFO     | zombie collector waiting for pid 1903877
[2026-01-14 03:38:58] 2026-01-14 08:38:25,290 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 03:38:58] 2026-01-14 08:38:25,290 | INFO     | collected zombie processes
[2026-01-14 03:38:58] 2026-01-14 08:38:25,290 | INFO     | will attempt to kill all subprocesses of pid=1903877
[2026-01-14 03:38:58] 2026-01-14 08:38:26,905 | INFO     | process IDs to be killed: [1903877] (in reverse order)
[2026-01-14 03:38:58] 2026-01-14 08:38:27,138 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 03:38:58] 2026-01-14 08:38:27,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 03:38:58] 2026-01-14 08:38:27,155 | INFO     | did not find any defunct processes belonging to 1903877
[2026-01-14 03:38:58] 2026-01-14 08:38:27,264 | INFO     | did not find any defunct processes belonging to 1903877
[2026-01-14 03:38:58] 2026-01-14 08:38:27,264 | INFO     | ready for new job
[2026-01-14 03:38:58] 2026-01-14 08:38:27,264 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 03:38:58] 2026-01-14 08:38:27,266 | INFO     | ***************************************
[2026-01-14 03:38:58] 2026-01-14 08:38:27,266 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 03:38:58] 2026-01-14 08:38:27,266 | INFO     | ***************************************
[2026-01-14 03:38:58] 2026-01-14 08:38:27,266 | INFO     | 
[2026-01-14 03:38:58] 2026-01-14 08:38:27,311 | INFO     | architecture information:
[2026-01-14 03:38:58] 2026-01-14 08:38:27,316 | INFO     | executing command: cat /etc/os-release
[2026-01-14 03:38:58] 2026-01-14 08:38:27,443 | INFO     | cat /etc/os-release:
[2026-01-14 03:38:58] NAME="CentOS Linux"
[2026-01-14 03:38:58] VERSION="7 (Core)"
[2026-01-14 03:38:58] ID="centos"
[2026-01-14 03:38:58] ID_LIKE="rhel fedora"
[2026-01-14 03:38:58] VERSION_ID="7"
[2026-01-14 03:38:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 03:38:58] ANSI_COLOR="0;31"
[2026-01-14 03:38:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 03:38:58] HOME_URL="https://www.centos.org/"
[2026-01-14 03:38:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 03:38:58] 
[2026-01-14 03:38:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 03:38:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 03:38:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 03:38:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 03:38:58] 
[2026-01-14 03:38:58] 2026-01-14 08:38:27,443 | INFO     | ***************************************
[2026-01-14 03:38:58] 2026-01-14 08:38:27,947 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-14 03:38:58] 2026-01-14 08:38:27,975 | INFO     | sufficient remaining disk space (123584118784 B)
[2026-01-14 03:38:58] 2026-01-14 08:38:27,975 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 03:38:58] 2026-01-14 08:38:27,975 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 03:38:58] 2026-01-14 08:38:27,975 | INFO     | update_server=False
[2026-01-14 03:38:58] 2026-01-14 08:38:27,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 03:38:58] 2026-01-14 08:38:27,976 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 03:38:58] 2026-01-14 08:38:27,977 | INFO     | aborting loop
[2026-01-14 03:38:58] 2026-01-14 08:38:28,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 03:38:58] 2026-01-14 08:38:28,573 | INFO     | all data control threads have been joined
[2026-01-14 03:38:58] 2026-01-14 08:38:28,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 03:38:58] 2026-01-14 08:38:28,983 | INFO     | [job] job monitor thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:29,000 | INFO     | [job] retrieve thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:29,070 | INFO     | [payload] failed_post thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:29,217 | INFO     | all payload control threads have been joined
[2026-01-14 03:38:58] 2026-01-14 08:38:29,279 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 03:38:58] 2026-01-14 08:38:29,432 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:29,593 | INFO     | [data] control thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:29,615 | INFO     | all job control threads have been joined
[2026-01-14 03:38:58] 2026-01-14 08:38:29,786 | INFO     | [data] copytool_in thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:29,804 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:30,156 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:30,224 | INFO     | [payload] control thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:30,259 | INFO     | [job] validate thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:30,269 | INFO     | [payload] validate_post thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:30,285 | INFO     | [job] queue monitor thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:30,405 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:30,621 | INFO     | [job] control thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:30,774 | INFO     | [data] copytool_out thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:32,113 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 03:38:58] 2026-01-14 08:38:35,168 | INFO     | [monitor] cgroup control has ended
[2026-01-14 03:38:58] 2026-01-14 08:38:35,231 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140697027819328)>', '<ExcThread(monitor, started 140696677771008)>']
[2026-01-14 03:38:58] 2026-01-14 08:38:40,257 | INFO     | all workflow threads have been joined
[2026-01-14 03:38:58] 2026-01-14 08:38:40,258 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 03:38:58] 2026-01-14 08:38:40,258 | INFO     | traces error code: 0
[2026-01-14 03:38:58] 2026-01-14 08:38:40,258 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 03:38:58] 2026-01-14 08:38:57,383 | INFO     | PID=1893724 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 03:38:58] 2026-01-14 08:38:57,384 | INFO     | .. there are 17 such processes running
[2026-01-14 03:38:58] 2026-01-14 08:38:57,386 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 03:38:58] 2026-01-14 08:38:57,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 03:38:58] 2026-01-14 08:38:57,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 03:38:58] 2026-01-14 08:38:57,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 03:38:58] 2026-01-14 08:38:57,386 | CRITICAL | thread 'MainThread' is not alive
[2026-01-14 03:38:58] 2026-01-14 08:38:57,386 | INFO     | [monitor] control thread has ended
[2026-01-14 03:38:58] 2026-01-14 08:38:57,612 [wrapper] ==== pilot stdout END ====
[2026-01-14 03:38:58] 2026-01-14 08:38:57,653 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 03:38:58] 2026-01-14 08:38:57,675 [wrapper] pilotpid: 1893724
[2026-01-14 03:38:58] 2026-01-14 08:38:57,701 [wrapper] Pilot exit status: 0
[2026-01-14 03:38:58] 2026-01-14 08:38:57,834 [wrapper] pandaids: 6969280792
[2026-01-14 03:38:58] 2026-01-14 08:38:58,404 [wrapper] cleanup supervisor_pilot 2210689 1893725
[2026-01-14 03:38:58] 2026-01-14 08:38:58,416 [wrapper] Test setup, not cleaning
[2026-01-14 03:38:58] 2026-01-14 08:38:58,435 [wrapper] apfmon messages muted
[2026-01-14 03:38:58] 2026-01-14 08:38:58,446 [wrapper] ==== wrapper stdout END ====
[2026-01-14 03:38:58] 2026-01-14 08:38:58,477 [wrapper] ==== wrapper stderr END ====
[2026-01-14 03:38:58]  *** Error codes and diagnostics ***
[2026-01-14 03:38:58]     "exeErrorCode": 0,
[2026-01-14 03:38:58]     "exeErrorDiag": "",
[2026-01-14 03:38:58]     "pilotErrorCode": 0,
[2026-01-14 03:38:58]     "pilotErrorDiag": "",
[2026-01-14 03:38:58]  *** Listing of results directory ***
[2026-01-14 03:38:58] total 734972
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas    579449 Jan 13 20:50 pilot3.tar.gz
[2026-01-14 03:38:58] -rwx------. 1 boincer umatlas     36322 Jan 13 20:51 runpilot2-wrapper.sh
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 20:54 queuedata.json
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas       100 Jan 14 02:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 03:38:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 14 02:17 run_atlas
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas       105 Jan 14 02:17 job.xml
[2026-01-14 03:38:58] -rw-r--r--. 2 boincer umatlas 595828653 Jan 14 02:17 EVNT.32794306._000455.pool.root.1
[2026-01-14 03:38:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 02:17 start_atlas.sh
[2026-01-14 03:38:58] drwxrwx--x. 2 boincer umatlas      4096 Jan 14 02:17 shared
[2026-01-14 03:38:58] -rw-r--r--. 2 boincer umatlas    592403 Jan 14 02:17 input.tar.gz
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas         0 Jan 14 02:17 boinc_lockfile
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas      2507 Jan 14 02:17 pandaJob.out
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas        57 Jan 14 02:17 setup.sh.local
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas    997226 Jan 14 02:18 agis_schedconf.cvmfs.json
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas   1516246 Jan 14 02:18 agis_ddmendpoints.agis.ALL.json
[2026-01-14 03:38:58] drwx------. 5 boincer umatlas      4096 Jan 14 02:18 pilot3
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas      6859 Jan 14 03:36 init_data.xml
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas 150830030 Jan 14 03:37 HITS.48215263._011373.pool.root.1
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas       531 Jan 14 03:37 boinc_task_state.xml
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas      1041 Jan 14 03:37 memory_monitor_summary.json
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas    340446 Jan 14 03:37 log.48215263._011373.job.log.tgz.1
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas      7833 Jan 14 03:38 heartbeat.json
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas      8192 Jan 14 03:38 boinc_mmap_file
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas        27 Jan 14 03:38 wrapper_checkpoint.txt
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas        95 Jan 14 03:38 pilot_heartbeat.json
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas       893 Jan 14 03:38 pilotlog.txt
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas    674891 Jan 14 03:38 log.48215263._011373.job.log.1
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas       357 Jan 14 03:38 output.list
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas       620 Jan 14 03:38 runtime_log
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas   1034240 Jan 14 03:38 result.tar.gz
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas      9352 Jan 14 03:38 runtime_log.err
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas       655 Jan 14 03:38 IhaMDm6D5z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxlpKDmeG7Z0m.diag
[2026-01-14 03:38:58] -rw-r--r--. 1 boincer umatlas     22365 Jan 14 03:38 stderr.txt
[2026-01-14 03:38:58] HITS file was successfully produced:
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas 150830030 Jan 14 03:37 shared/HITS.pool.root.1
[2026-01-14 03:38:58]  *** Contents of shared directory: ***
[2026-01-14 03:38:58] total 730776
[2026-01-14 03:38:58] -rw-r--r--. 2 boincer umatlas 595828653 Jan 14 02:17 ATLAS.root_0
[2026-01-14 03:38:58] -rw-r--r--. 2 boincer umatlas     15847 Jan 14 02:17 start_atlas.sh
[2026-01-14 03:38:58] -rw-r--r--. 2 boincer umatlas    592403 Jan 14 02:17 input.tar.gz
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas 150830030 Jan 14 03:37 HITS.pool.root.1
[2026-01-14 03:38:58] -rw-------. 1 boincer umatlas   1034240 Jan 14 03:38 result.tar.gz
03:38:59 (1889715): run_atlas exited; CPU time 25592.559244
03:38:59 (1889715): called boinc_finish(0)

</stderr_txt>
]]>

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