Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:55:04 (4114518): wrapper (7.7.26015): starting
06:55:04 (4114518): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 06:55:04] Arguments: --nthreads 3
[2026-01-14 06:55:04] Threads: 3
[2026-01-14 06:55:04] Checking for CVMFS
[2026-01-14 06:55:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 06:55:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 06:55:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 06:55:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 06:55:04] 2.9.2.0 3982237 323 66400 155120 1 57 36122824 36864000 0 130560 0 361338 99.989 13877 27424 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 06:55:04] CVMFS is ok
[2026-01-14 06:55:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 06:55:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 06:55:04] Further information can be found at the LHC@home message board.
[2026-01-14 06:55:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 06:55:04] Checking for apptainer binary...
[2026-01-14 06:55:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 06:55:04] Running /usr/bin/apptainer --version
[2026-01-14 06:55:04] apptainer version 1.4.1-1.1
[2026-01-14 06:55:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 06:55:04] thA331b
[2026-01-14 06:55:04] apptainer works
[2026-01-14 06:55:04] Set ATHENA_PROC_NUMBER=3
[2026-01-14 06:55:04] Set ATHENA_CORE_NUMBER=3
[2026-01-14 06:55:04] Starting ATLAS job with PandaID=6969279935
[2026-01-14 06:55:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 07:51:26]  *** The last 200 lines of the pilot log: ***
[2026-01-14 07:51:26] 2026-01-14 06:50:54,377 | INFO     | will attempt to kill all subprocesses of pid=4124682
[2026-01-14 07:51:26] 2026-01-14 06:50:54,421 | INFO     | process IDs to be killed: [4124682] (in reverse order)
[2026-01-14 07:51:26] 2026-01-14 06:50:54,444 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 07:51:26] 2026-01-14 06:50:54,444 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 07:51:26] 2026-01-14 06:50:54,446 | INFO     | did not find any defunct processes belonging to 4124682
[2026-01-14 07:51:26] 2026-01-14 06:50:54,447 | INFO     | did not find any defunct processes belonging to 4124682
[2026-01-14 07:51:26] 2026-01-14 06:50:54,447 | INFO     | ready for new job
[2026-01-14 07:51:26] 2026-01-14 06:50:54,447 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 07:51:26] 2026-01-14 06:50:54,447 | INFO     | ***************************************
[2026-01-14 07:51:26] 2026-01-14 06:50:54,448 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 07:51:26] 2026-01-14 06:50:54,448 | INFO     | ***************************************
[2026-01-14 07:51:26] 2026-01-14 06:50:54,448 | INFO     | 
[2026-01-14 07:51:26] 2026-01-14 06:50:54,448 | INFO     | architecture information:
[2026-01-14 07:51:26] 2026-01-14 06:50:54,448 | INFO     | executing command: cat /etc/os-release
[2026-01-14 07:51:26] 2026-01-14 06:50:54,457 | INFO     | cat /etc/os-release:
[2026-01-14 07:51:26] NAME="CentOS Linux"
[2026-01-14 07:51:26] VERSION="7 (Core)"
[2026-01-14 07:51:26] ID="centos"
[2026-01-14 07:51:26] ID_LIKE="rhel fedora"
[2026-01-14 07:51:26] VERSION_ID="7"
[2026-01-14 07:51:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 07:51:26] ANSI_COLOR="0;31"
[2026-01-14 07:51:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 07:51:26] HOME_URL="https://www.centos.org/"
[2026-01-14 07:51:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 07:51:26] 
[2026-01-14 07:51:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 07:51:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 07:51:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 07:51:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 07:51:26] 
[2026-01-14 07:51:26] 2026-01-14 06:50:54,457 | INFO     | ***************************************
[2026-01-14 07:51:26] 2026-01-14 06:50:54,960 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 07:51:26] 2026-01-14 06:50:54,973 | INFO     | sufficient remaining disk space (223053086720 B)
[2026-01-14 07:51:26] 2026-01-14 06:50:54,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 07:51:26] 2026-01-14 06:50:54,973 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 07:51:26] 2026-01-14 06:50:54,973 | INFO     | update_server=False
[2026-01-14 07:51:26] 2026-01-14 06:50:54,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 07:51:26] 2026-01-14 06:50:54,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 07:51:26] 2026-01-14 06:50:54,974 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 07:51:26] 2026-01-14 06:50:54,974 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 07:51:26] 2026-01-14 06:50:54,974 | INFO     | aborting loop
[2026-01-14 07:51:26] 2026-01-14 06:50:55,172 | INFO     | all payload control threads have been joined
[2026-01-14 07:51:26] 2026-01-14 06:50:55,790 | INFO     | all data control threads have been joined
[2026-01-14 07:51:26] 2026-01-14 06:50:55,979 | INFO     | [job] retrieve thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:55,979 | INFO     | [job] queue monitor thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:55,979 | INFO     | [job] job monitor thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:56,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 07:51:26] 2026-01-14 06:50:56,160 | INFO     | [payload] failed_post thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:56,178 | INFO     | [payload] control thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:56,525 | INFO     | all job control threads have been joined
[2026-01-14 07:51:26] 2026-01-14 06:50:56,725 | INFO     | [payload] validate_post thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:56,796 | INFO     | [data] control thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:56,868 | INFO     | [data] copytool_in thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:57,280 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:57,390 | INFO     | [job] validate thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:57,448 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:57,460 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:57,531 | INFO     | [job] control thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:58,054 | INFO     | [data] copytool_out thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:50:58,981 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:51:05,351 | INFO     | job.realtimelogging is not enabled
[2026-01-14 07:51:26] 2026-01-14 06:51:06,357 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 07:51:26] 2026-01-14 06:51:13,820 | INFO     | [monitor] cgroup control has ended
[2026-01-14 07:51:26] 2026-01-14 06:51:14,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235838277440)>', '<ExcThread(monitor, started 140234842961664)>']
[2026-01-14 07:51:26] 2026-01-14 06:51:19,871 | INFO     | all workflow threads have been joined
[2026-01-14 07:51:26] 2026-01-14 06:51:19,871 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 07:51:26] 2026-01-14 06:51:19,872 | INFO     | traces error code: 0
[2026-01-14 07:51:26] 2026-01-14 06:51:19,872 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 07:51:26] 2026-01-14 06:51:25,905 | INFO     | PID=4118239 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 07:51:26] 2026-01-14 06:51:25,906 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 07:51:26] 2026-01-14 06:51:25,906 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 07:51:26] 2026-01-14 06:51:25,906 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 07:51:26] 2026-01-14 06:51:25,906 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 07:51:26] 2026-01-14 06:51:25,906 | INFO     | [monitor] control thread has ended
[2026-01-14 07:51:26] 2026-01-14 06:51:25,952 [wrapper] ==== pilot stdout END ====
[2026-01-14 07:51:26] 2026-01-14 06:51:25,955 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 07:51:26] 2026-01-14 06:51:25,957 [wrapper] pilotpid: 4118239
[2026-01-14 07:51:26] 2026-01-14 06:51:25,959 [wrapper] Pilot exit status: 0
[2026-01-14 07:51:26] 2026-01-14 06:51:25,967 [wrapper] pandaids: 6969279935
[2026-01-14 07:51:26] 2026-01-14 06:51:25,982 [wrapper] cleanup supervisor_pilot 4133894 4118240
[2026-01-14 07:51:26] 2026-01-14 06:51:25,985 [wrapper] Test setup, not cleaning
[2026-01-14 07:51:26] 2026-01-14 06:51:25,987 [wrapper] apfmon messages muted
[2026-01-14 07:51:26] 2026-01-14 06:51:25,989 [wrapper] ==== wrapper stdout END ====
[2026-01-14 07:51:26] 2026-01-14 06:51:25,991 [wrapper] ==== wrapper stderr END ====
[2026-01-14 07:51:26]  *** Error codes and diagnostics ***
[2026-01-14 07:51:26]     "exeErrorCode": 0,
[2026-01-14 07:51:26]     "exeErrorDiag": "",
[2026-01-14 07:51:26]     "pilotErrorCode": 0,
[2026-01-14 07:51:26]     "pilotErrorDiag": "",
[2026-01-14 07:51:26]  *** Listing of results directory ***
[2026-01-14 07:51:26] total 741484
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc    579449 Jan 14 02:50 pilot3.tar.gz
[2026-01-14 07:51:26] -rwx------ 1 boinc boinc     36322 Jan 14 02:51 runpilot2-wrapper.sh
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc      5112 Jan 14 02:54 queuedata.json
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc       100 Jan 14 06:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 07:51:26] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 06:55 run_atlas
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc       105 Jan 14 06:55 job.xml
[2026-01-14 07:51:26] -rw-r--r-- 2 boinc boinc 597106837 Jan 14 06:55 EVNT.32794306._000435.pool.root.1
[2026-01-14 07:51:26] -rw-r--r-- 2 boinc boinc    592398 Jan 14 06:55 input.tar.gz
[2026-01-14 07:51:26] -rw-r--r-- 2 boinc boinc     15847 Jan 14 06:55 start_atlas.sh
[2026-01-14 07:51:26] drwxrwx--x 2 boinc boinc      4096 Jan 14 06:55 shared
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc         0 Jan 14 06:55 boinc_setup_complete
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc      6441 Jan 14 06:55 init_data.xml
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc         0 Jan 14 06:55 boinc_lockfile
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc      2504 Jan 14 06:55 pandaJob.out
[2026-01-14 07:51:26] -rw------- 1 boinc boinc    997226 Jan 14 06:55 agis_schedconf.cvmfs.json
[2026-01-14 07:51:26] -rw------- 1 boinc boinc   1516246 Jan 14 06:55 agis_ddmendpoints.agis.ALL.json
[2026-01-14 07:51:26] drwx------ 5 boinc boinc      4096 Jan 14 06:55 pilot3
[2026-01-14 07:51:26] -rw------- 1 boinc boinc 156819832 Jan 14 07:50 HITS.48215263._010851.pool.root.1
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc       529 Jan 14 07:50 boinc_task_state.xml
[2026-01-14 07:51:26] -rw------- 1 boinc boinc      1014 Jan 14 07:50 memory_monitor_summary.json
[2026-01-14 07:51:26] -rw------- 1 boinc boinc    214394 Jan 14 07:50 log.48215263._010851.job.log.tgz.1
[2026-01-14 07:51:26] -rw------- 1 boinc boinc      7747 Jan 14 07:50 heartbeat.json
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc        26 Jan 14 07:51 wrapper_checkpoint.txt
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc      8192 Jan 14 07:51 boinc_mmap_file
[2026-01-14 07:51:26] -rw------- 1 boinc boinc       747 Jan 14 07:51 pilotlog.txt
[2026-01-14 07:51:26] -rw------- 1 boinc boinc        95 Jan 14 07:51 pilot_heartbeat.json
[2026-01-14 07:51:26] -rw------- 1 boinc boinc    508070 Jan 14 07:51 log.48215263._010851.job.log.1
[2026-01-14 07:51:26] -rw------- 1 boinc boinc       357 Jan 14 07:51 output.list
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc       620 Jan 14 07:51 runtime_log
[2026-01-14 07:51:26] -rw------- 1 boinc boinc    737280 Jan 14 07:51 result.tar.gz
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc      8902 Jan 14 07:51 runtime_log.err
[2026-01-14 07:51:26] -rw------- 1 boinc boinc       657 Jan 14 07:51 iHXMDmiD5z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYipKDmfhuymm.diag
[2026-01-14 07:51:26] -rw-r--r-- 1 boinc boinc     10289 Jan 14 07:51 stderr.txt
[2026-01-14 07:51:26] HITS file was successfully produced:
[2026-01-14 07:51:26] -rw------- 1 boinc boinc 156819832 Jan 14 07:50 shared/HITS.pool.root.1
[2026-01-14 07:51:26]  *** Contents of shared directory: ***
[2026-01-14 07:51:26] total 737588
[2026-01-14 07:51:26] -rw-r--r-- 2 boinc boinc 597106837 Jan 14 06:55 ATLAS.root_0
[2026-01-14 07:51:26] -rw-r--r-- 2 boinc boinc    592398 Jan 14 06:55 input.tar.gz
[2026-01-14 07:51:26] -rw-r--r-- 2 boinc boinc     15847 Jan 14 06:55 start_atlas.sh
[2026-01-14 07:51:26] -rw------- 1 boinc boinc 156819832 Jan 14 07:50 HITS.pool.root.1
[2026-01-14 07:51:26] -rw------- 1 boinc boinc    737280 Jan 14 07:51 result.tar.gz
07:51:27 (4114518): run_atlas exited; CPU time 9335.292415
07:51:27 (4114518): called boinc_finish(0)

</stderr_txt>
]]>

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