Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:51:30 (4136534): wrapper (7.7.26015): starting
07:51:30 (4136534): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 07:51:30] Arguments: --nthreads 3
[2026-01-14 07:51:30] Threads: 3
[2026-01-14 07:51:30] Checking for CVMFS
[2026-01-14 07:51:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 07:51:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 07:51:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 07:51:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 07:51:30] 2.9.2.0 3982237 379 67052 155121 0 57 36133192 36864000 0 130560 0 421596 99.990 15222 27676 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 07:51:30] CVMFS is ok
[2026-01-14 07:51:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 07:51:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 07:51:30] Further information can be found at the LHC@home message board.
[2026-01-14 07:51:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 07:51:30] Checking for apptainer binary...
[2026-01-14 07:51:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 07:51:30] Running /usr/bin/apptainer --version
[2026-01-14 07:51:30] apptainer version 1.4.1-1.1
[2026-01-14 07:51:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 07:51:30] thA331b
[2026-01-14 07:51:30] apptainer works
[2026-01-14 07:51:30] Set ATHENA_PROC_NUMBER=3
[2026-01-14 07:51:30] Set ATHENA_CORE_NUMBER=3
[2026-01-14 07:51:30] Starting ATLAS job with PandaID=6969268735
[2026-01-14 07:51:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 08:45:47]  *** The last 200 lines of the pilot log: ***
[2026-01-14 08:45:47] 2026-01-14 07:45:10,828 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,828 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | job 6969268735 has completed (purged errors)
[2026-01-14 08:45:47] 2026-01-14 07:45:10,829 | INFO     | overall cleanup function is called
[2026-01-14 08:45:47] 2026-01-14 07:45:11,835 | INFO     | --- collectZombieJob: --- 10, [4146711]
[2026-01-14 08:45:47] 2026-01-14 07:45:11,836 | INFO     | zombie collector waiting for pid 4146711
[2026-01-14 08:45:47] 2026-01-14 07:45:11,837 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 08:45:47] 2026-01-14 07:45:11,837 | INFO     | collected zombie processes
[2026-01-14 08:45:47] 2026-01-14 07:45:11,837 | INFO     | will attempt to kill all subprocesses of pid=4146711
[2026-01-14 08:45:47] 2026-01-14 07:45:11,880 | INFO     | process IDs to be killed: [4146711] (in reverse order)
[2026-01-14 08:45:47] 2026-01-14 07:45:11,905 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 08:45:47] 2026-01-14 07:45:11,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 08:45:47] 2026-01-14 07:45:11,906 | INFO     | did not find any defunct processes belonging to 4146711
[2026-01-14 08:45:47] 2026-01-14 07:45:11,907 | INFO     | did not find any defunct processes belonging to 4146711
[2026-01-14 08:45:47] 2026-01-14 07:45:11,907 | INFO     | ready for new job
[2026-01-14 08:45:47] 2026-01-14 07:45:11,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 08:45:47] 2026-01-14 07:45:11,908 | INFO     | ***************************************
[2026-01-14 08:45:47] 2026-01-14 07:45:11,908 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 08:45:47] 2026-01-14 07:45:11,908 | INFO     | ***************************************
[2026-01-14 08:45:47] 2026-01-14 07:45:11,908 | INFO     | 
[2026-01-14 08:45:47] 2026-01-14 07:45:11,909 | INFO     | architecture information:
[2026-01-14 08:45:47] 2026-01-14 07:45:11,909 | INFO     | executing command: cat /etc/os-release
[2026-01-14 08:45:47] 2026-01-14 07:45:11,918 | INFO     | cat /etc/os-release:
[2026-01-14 08:45:47] NAME="CentOS Linux"
[2026-01-14 08:45:47] VERSION="7 (Core)"
[2026-01-14 08:45:47] ID="centos"
[2026-01-14 08:45:47] ID_LIKE="rhel fedora"
[2026-01-14 08:45:47] VERSION_ID="7"
[2026-01-14 08:45:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 08:45:47] ANSI_COLOR="0;31"
[2026-01-14 08:45:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 08:45:47] HOME_URL="https://www.centos.org/"
[2026-01-14 08:45:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 08:45:47] 
[2026-01-14 08:45:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 08:45:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 08:45:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 08:45:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 08:45:47] 
[2026-01-14 08:45:47] 2026-01-14 07:45:11,918 | INFO     | ***************************************
[2026-01-14 08:45:47] 2026-01-14 07:45:12,421 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 08:45:47] 2026-01-14 07:45:12,434 | INFO     | sufficient remaining disk space (222460641280 B)
[2026-01-14 08:45:47] 2026-01-14 07:45:12,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 08:45:47] 2026-01-14 07:45:12,434 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 08:45:47] 2026-01-14 07:45:12,434 | INFO     | update_server=False
[2026-01-14 08:45:47] 2026-01-14 07:45:12,434 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 08:45:47] 2026-01-14 07:45:12,434 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-14 08:45:47] 2026-01-14 07:45:12,435 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 08:45:47] 2026-01-14 07:45:12,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 08:45:47] 2026-01-14 07:45:12,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 08:45:47] 2026-01-14 07:45:12,435 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 08:45:47] 2026-01-14 07:45:12,435 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 08:45:47] 2026-01-14 07:45:12,856 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 08:45:47] 2026-01-14 07:45:12,856 | INFO     | aborting loop
[2026-01-14 08:45:47] 2026-01-14 07:45:12,945 | INFO     | all data control threads have been joined
[2026-01-14 08:45:47] 2026-01-14 07:45:13,154 | INFO     | all job control threads have been joined
[2026-01-14 08:45:47] 2026-01-14 07:45:13,440 | INFO     | [job] retrieve thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:13,440 | INFO     | [job] queue monitor thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:13,497 | INFO     | all payload control threads have been joined
[2026-01-14 08:45:47] 2026-01-14 07:45:13,602 | INFO     | [payload] validate_post thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:13,862 | INFO     | [job] job monitor thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:13,927 | INFO     | [data] copytool_in thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:13,951 | INFO     | [data] control thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:14,160 | INFO     | [job] control thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:14,240 | INFO     | [payload] failed_post thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:14,441 | INFO     | [data] copytool_out thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:14,459 | INFO     | [job] validate thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:14,483 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:14,502 | INFO     | [payload] control thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:14,530 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:14,530 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:14,918 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 08:45:47] 2026-01-14 07:45:18,926 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:22,523 | INFO     | job.realtimelogging is not enabled
[2026-01-14 08:45:47] 2026-01-14 07:45:23,529 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 08:45:47] 2026-01-14 07:45:40,175 | INFO     | [monitor] cgroup control has ended
[2026-01-14 08:45:47] 2026-01-14 07:45:41,861 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955508287296)>', '<ExcThread(monitor, started 139955158361856)>']
[2026-01-14 08:45:47] 2026-01-14 07:45:42,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 08:45:47] 2026-01-14 07:45:42,595 | INFO     | [monitor] control thread has ended
[2026-01-14 08:45:47] 2026-01-14 07:45:46,886 | INFO     | all workflow threads have been joined
[2026-01-14 08:45:47] 2026-01-14 07:45:46,887 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 08:45:47] 2026-01-14 07:45:46,887 | INFO     | traces error code: 0
[2026-01-14 08:45:47] 2026-01-14 07:45:46,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 08:45:47] 2026-01-14 07:45:46,939 [wrapper] ==== pilot stdout END ====
[2026-01-14 08:45:47] 2026-01-14 07:45:46,941 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 08:45:47] 2026-01-14 07:45:46,943 [wrapper] pilotpid: 4140258
[2026-01-14 08:45:47] 2026-01-14 07:45:46,945 [wrapper] Pilot exit status: 0
[2026-01-14 08:45:47] 2026-01-14 07:45:46,952 [wrapper] pandaids: 6969268735
[2026-01-14 08:45:47] 2026-01-14 07:45:46,968 [wrapper] cleanup supervisor_pilot 4155957 4140259
[2026-01-14 08:45:47] 2026-01-14 07:45:46,971 [wrapper] Test setup, not cleaning
[2026-01-14 08:45:47] 2026-01-14 07:45:46,973 [wrapper] apfmon messages muted
[2026-01-14 08:45:47] 2026-01-14 07:45:46,975 [wrapper] ==== wrapper stdout END ====
[2026-01-14 08:45:47] 2026-01-14 07:45:46,977 [wrapper] ==== wrapper stderr END ====
[2026-01-14 08:45:47]  *** Error codes and diagnostics ***
[2026-01-14 08:45:47]     "exeErrorCode": 0,
[2026-01-14 08:45:47]     "exeErrorDiag": "",
[2026-01-14 08:45:47]     "pilotErrorCode": 0,
[2026-01-14 08:45:47]     "pilotErrorDiag": "",
[2026-01-14 08:45:47]  *** Listing of results directory ***
[2026-01-14 08:45:47] total 735648
[2026-01-14 08:45:47] -rwx------ 1 boinc boinc     36322 Jan 13 22:59 runpilot2-wrapper.sh
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:12 pilot3.tar.gz
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:20 queuedata.json
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc       100 Jan 14 07:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 08:45:47] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 07:51 run_atlas
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc       105 Jan 14 07:51 job.xml
[2026-01-14 08:45:47] -rw-r--r-- 2 boinc boinc 596887451 Jan 14 07:51 EVNT.32794306._000242.pool.root.1
[2026-01-14 08:45:47] -rw-r--r-- 2 boinc boinc    592392 Jan 14 07:51 input.tar.gz
[2026-01-14 08:45:47] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:51 start_atlas.sh
[2026-01-14 08:45:47] drwxrwx--x 2 boinc boinc      4096 Jan 14 07:51 shared
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:51 boinc_setup_complete
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc      6441 Jan 14 07:51 init_data.xml
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:51 boinc_lockfile
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc      2505 Jan 14 07:51 pandaJob.out
[2026-01-14 08:45:47] -rw------- 1 boinc boinc    997218 Jan 14 07:51 agis_schedconf.cvmfs.json
[2026-01-14 08:45:47] -rw------- 1 boinc boinc   1516246 Jan 14 07:51 agis_ddmendpoints.agis.ALL.json
[2026-01-14 08:45:47] drwx------ 5 boinc boinc      4096 Jan 14 07:51 pilot3
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc       529 Jan 14 08:44 boinc_task_state.xml
[2026-01-14 08:45:47] -rw------- 1 boinc boinc 151051315 Jan 14 08:44 HITS.48215263._006043.pool.root.1
[2026-01-14 08:45:47] -rw------- 1 boinc boinc        95 Jan 14 08:44 pilot_heartbeat.json
[2026-01-14 08:45:47] -rw------- 1 boinc boinc      1020 Jan 14 08:45 memory_monitor_summary.json
[2026-01-14 08:45:47] -rw------- 1 boinc boinc    234295 Jan 14 08:45 log.48215263._006043.job.log.tgz.1
[2026-01-14 08:45:47] -rw------- 1 boinc boinc      7757 Jan 14 08:45 heartbeat.json
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc      8192 Jan 14 08:45 boinc_mmap_file
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc        26 Jan 14 08:45 wrapper_checkpoint.txt
[2026-01-14 08:45:47] -rw------- 1 boinc boinc      4628 Jan 14 08:45 pilotlog.txt
[2026-01-14 08:45:47] -rw------- 1 boinc boinc    489995 Jan 14 08:45 log.48215263._006043.job.log.1
[2026-01-14 08:45:47] -rw------- 1 boinc boinc       357 Jan 14 08:45 output.list
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc       620 Jan 14 08:45 runtime_log
[2026-01-14 08:45:47] -rw------- 1 boinc boinc    747520 Jan 14 08:45 result.tar.gz
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc      8902 Jan 14 08:45 runtime_log.err
[2026-01-14 08:45:47] -rw------- 1 boinc boinc       657 Jan 14 08:45 aByLDm9a1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4yoKDmPrv5in.diag
[2026-01-14 08:45:47] -rw-r--r-- 1 boinc boinc     12262 Jan 14 08:45 stderr.txt
[2026-01-14 08:45:47] HITS file was successfully produced:
[2026-01-14 08:45:47] -rw------- 1 boinc boinc 151051315 Jan 14 08:44 shared/HITS.pool.root.1
[2026-01-14 08:45:47]  *** Contents of shared directory: ***
[2026-01-14 08:45:47] total 731748
[2026-01-14 08:45:47] -rw-r--r-- 2 boinc boinc 596887451 Jan 14 07:51 ATLAS.root_0
[2026-01-14 08:45:47] -rw-r--r-- 2 boinc boinc    592392 Jan 14 07:51 input.tar.gz
[2026-01-14 08:45:47] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:51 start_atlas.sh
[2026-01-14 08:45:47] -rw------- 1 boinc boinc 151051315 Jan 14 08:44 HITS.pool.root.1
[2026-01-14 08:45:47] -rw------- 1 boinc boinc    747520 Jan 14 08:45 result.tar.gz
08:45:48 (4136534): run_atlas exited; CPU time 9043.814300
08:45:48 (4136534): called boinc_finish(0)

</stderr_txt>
]]>

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