Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:20:57 (1148760): wrapper (7.7.26015): starting
06:20:57 (1148760): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 06:20:57] Arguments: --nthreads 3
[2026-01-14 06:20:57] Threads: 3
[2026-01-14 06:20:57] Checking for CVMFS
[2026-01-14 06:20:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 06:20:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 06:20:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 06:20:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 06:20:58] 2.9.2.0 1126407 56 49284 155120 3 57 24154498 36864000 0 130560 0 60258 99.969 5577 31331 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 06:20:58] CVMFS is ok
[2026-01-14 06:20:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 06:20:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 06:20:58] Further information can be found at the LHC@home message board.
[2026-01-14 06:20:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 06:20:58] Checking for apptainer binary...
[2026-01-14 06:20:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 06:20:58] Running /usr/bin/apptainer --version
[2026-01-14 06:20:58] apptainer version 1.4.1-1.1
[2026-01-14 06:20:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 06:20:58] atlasA223
[2026-01-14 06:20:58] apptainer works
[2026-01-14 06:20:58] Set ATHENA_PROC_NUMBER=3
[2026-01-14 06:20:58] Set ATHENA_CORE_NUMBER=3
[2026-01-14 06:20:58] Starting ATLAS job with PandaID=6969268662
[2026-01-14 06:20:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 07:17:11]  *** The last 200 lines of the pilot log: ***
[2026-01-14 07:17:11] 2026-01-14 06:16:33,582 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 07:17:11] 2026-01-14 06:16:33,582 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 07:17:11] 2026-01-14 06:16:33,582 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 07:17:11] 2026-01-14 06:16:33,582 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 07:17:11] 2026-01-14 06:16:33,582 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 07:17:11] 2026-01-14 06:16:33,582 | INFO     | job 6969268662 has completed (purged errors)
[2026-01-14 07:17:11] 2026-01-14 06:16:33,582 | INFO     | overall cleanup function is called
[2026-01-14 07:17:11] 2026-01-14 06:16:34,589 | INFO     | --- collectZombieJob: --- 10, [1158929]
[2026-01-14 07:17:11] 2026-01-14 06:16:34,589 | INFO     | zombie collector waiting for pid 1158929
[2026-01-14 07:17:11] 2026-01-14 06:16:34,589 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 07:17:11] 2026-01-14 06:16:34,589 | INFO     | collected zombie processes
[2026-01-14 07:17:11] 2026-01-14 06:16:34,589 | INFO     | will attempt to kill all subprocesses of pid=1158929
[2026-01-14 07:17:11] 2026-01-14 06:16:34,639 | INFO     | process IDs to be killed: [1158929] (in reverse order)
[2026-01-14 07:17:11] 2026-01-14 06:16:34,666 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 07:17:11] 2026-01-14 06:16:34,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 07:17:11] 2026-01-14 06:16:34,668 | INFO     | did not find any defunct processes belonging to 1158929
[2026-01-14 07:17:11] 2026-01-14 06:16:34,669 | INFO     | did not find any defunct processes belonging to 1158929
[2026-01-14 07:17:11] 2026-01-14 06:16:34,669 | INFO     | ready for new job
[2026-01-14 07:17:11] 2026-01-14 06:16:34,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 07:17:11] 2026-01-14 06:16:34,670 | INFO     | ***************************************
[2026-01-14 07:17:11] 2026-01-14 06:16:34,670 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 07:17:11] 2026-01-14 06:16:34,670 | INFO     | ***************************************
[2026-01-14 07:17:11] 2026-01-14 06:16:34,670 | INFO     | 
[2026-01-14 07:17:11] 2026-01-14 06:16:34,670 | INFO     | architecture information:
[2026-01-14 07:17:11] 2026-01-14 06:16:34,670 | INFO     | executing command: cat /etc/os-release
[2026-01-14 07:17:11] 2026-01-14 06:16:34,679 | INFO     | cat /etc/os-release:
[2026-01-14 07:17:11] NAME="CentOS Linux"
[2026-01-14 07:17:11] VERSION="7 (Core)"
[2026-01-14 07:17:11] ID="centos"
[2026-01-14 07:17:11] ID_LIKE="rhel fedora"
[2026-01-14 07:17:11] VERSION_ID="7"
[2026-01-14 07:17:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 07:17:11] ANSI_COLOR="0;31"
[2026-01-14 07:17:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 07:17:11] HOME_URL="https://www.centos.org/"
[2026-01-14 07:17:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 07:17:11] 
[2026-01-14 07:17:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 07:17:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 07:17:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 07:17:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 07:17:11] 
[2026-01-14 07:17:11] 2026-01-14 06:16:34,679 | INFO     | ***************************************
[2026-01-14 07:17:11] 2026-01-14 06:16:35,182 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 07:17:11] 2026-01-14 06:16:35,195 | INFO     | sufficient remaining disk space (380512501760 B)
[2026-01-14 07:17:11] 2026-01-14 06:16:35,195 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 07:17:11] 2026-01-14 06:16:35,195 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 07:17:11] 2026-01-14 06:16:35,195 | INFO     | update_server=False
[2026-01-14 07:17:11] 2026-01-14 06:16:35,195 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 07:17:11] 2026-01-14 06:16:35,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 07:17:11] 2026-01-14 06:16:35,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 07:17:11] 2026-01-14 06:16:35,257 | INFO     | all payload control threads have been joined
[2026-01-14 07:17:11] 2026-01-14 06:16:36,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 07:17:11] 2026-01-14 06:16:36,042 | INFO     | aborting loop
[2026-01-14 07:17:11] 2026-01-14 06:16:36,092 | INFO     | all data control threads have been joined
[2026-01-14 07:17:11] 2026-01-14 06:16:36,200 | INFO     | [job] retrieve thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:36,201 | INFO     | [job] queue monitor thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:36,262 | INFO     | [payload] control thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:36,544 | INFO     | all job control threads have been joined
[2026-01-14 07:17:11] 2026-01-14 06:16:36,583 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:36,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 07:17:11] 2026-01-14 06:16:37,029 | INFO     | [payload] failed_post thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:37,047 | INFO     | [job] job monitor thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:37,081 | INFO     | [data] copytool_in thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:37,098 | INFO     | [data] control thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:37,549 | INFO     | [job] control thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:37,556 | INFO     | [job] validate thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:37,571 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:37,590 | INFO     | [payload] validate_post thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:37,646 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:38,637 | INFO     | [data] copytool_out thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:39,202 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:16:45,634 | INFO     | job.realtimelogging is not enabled
[2026-01-14 07:17:11] 2026-01-14 06:16:46,639 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 07:17:11] 2026-01-14 06:17:05,294 | INFO     | PID=1152489 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 07:17:11] 2026-01-14 06:17:05,294 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 07:17:11] 2026-01-14 06:17:05,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 07:17:11] 2026-01-14 06:17:05,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 07:17:11] 2026-01-14 06:17:06,643 | INFO     | [monitor] cgroup control has ended
[2026-01-14 07:17:11] 2026-01-14 06:17:06,712 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140002308597568)>', '<ExcThread(monitor, started 140001807415040)>']
[2026-01-14 07:17:11] 2026-01-14 06:17:07,305 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 07:17:11] 2026-01-14 06:17:07,306 | INFO     | [monitor] control thread has ended
[2026-01-14 07:17:11] 2026-01-14 06:17:11,717 | INFO     | all workflow threads have been joined
[2026-01-14 07:17:11] 2026-01-14 06:17:11,717 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 07:17:11] 2026-01-14 06:17:11,717 | INFO     | traces error code: 0
[2026-01-14 07:17:11] 2026-01-14 06:17:11,717 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 07:17:11] 2026-01-14 06:17:11,777 [wrapper] ==== pilot stdout END ====
[2026-01-14 07:17:11] 2026-01-14 06:17:11,779 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 07:17:11] 2026-01-14 06:17:11,781 [wrapper] pilotpid: 1152489
[2026-01-14 07:17:11] 2026-01-14 06:17:11,784 [wrapper] Pilot exit status: 0
[2026-01-14 07:17:11] 2026-01-14 06:17:11,791 [wrapper] pandaids: 6969268662
[2026-01-14 07:17:11] 2026-01-14 06:17:11,810 [wrapper] cleanup supervisor_pilot 1168170 1152490
[2026-01-14 07:17:11] 2026-01-14 06:17:11,812 [wrapper] Test setup, not cleaning
[2026-01-14 07:17:11] 2026-01-14 06:17:11,814 [wrapper] apfmon messages muted
[2026-01-14 07:17:11] 2026-01-14 06:17:11,817 [wrapper] ==== wrapper stdout END ====
[2026-01-14 07:17:11] 2026-01-14 06:17:11,819 [wrapper] ==== wrapper stderr END ====
[2026-01-14 07:17:11]  *** Error codes and diagnostics ***
[2026-01-14 07:17:11]     "exeErrorCode": 0,
[2026-01-14 07:17:11]     "exeErrorDiag": "",
[2026-01-14 07:17:11]     "pilotErrorCode": 0,
[2026-01-14 07:17:11]     "pilotErrorDiag": "",
[2026-01-14 07:17:11]  *** Listing of results directory ***
[2026-01-14 07:17:11] total 731244
[2026-01-14 07:17:11] -rwx------ 1 boinc boinc     36322 Jan 13 22:59 runpilot2-wrapper.sh
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:12 pilot3.tar.gz
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:20 queuedata.json
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc       100 Jan 14 06:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 07:17:11] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 06:20 run_atlas
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc       105 Jan 14 06:20 job.xml
[2026-01-14 07:17:11] -rw-r--r-- 2 boinc boinc 591782329 Jan 14 06:20 EVNT.32794306._000239.pool.root.1
[2026-01-14 07:17:11] -rw-r--r-- 2 boinc boinc    592396 Jan 14 06:20 input.tar.gz
[2026-01-14 07:17:11] -rw-r--r-- 2 boinc boinc     15847 Jan 14 06:20 start_atlas.sh
[2026-01-14 07:17:11] drwxrwx--x 2 boinc boinc      4096 Jan 14 06:20 shared
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc         0 Jan 14 06:20 boinc_setup_complete
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc      6446 Jan 14 06:20 init_data.xml
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc         0 Jan 14 06:20 boinc_lockfile
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc      2504 Jan 14 06:20 pandaJob.out
[2026-01-14 07:17:11] -rw------- 1 boinc boinc    997226 Jan 14 06:21 agis_schedconf.cvmfs.json
[2026-01-14 07:17:11] -rw------- 1 boinc boinc   1516246 Jan 14 06:21 agis_ddmendpoints.agis.ALL.json
[2026-01-14 07:17:11] drwx------ 5 boinc boinc      4096 Jan 14 06:21 pilot3
[2026-01-14 07:17:11] -rw------- 1 boinc boinc 151603120 Jan 14 07:16 HITS.48215263._005970.pool.root.1
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc       529 Jan 14 07:16 boinc_task_state.xml
[2026-01-14 07:17:11] -rw------- 1 boinc boinc        95 Jan 14 07:16 pilot_heartbeat.json
[2026-01-14 07:17:11] -rw------- 1 boinc boinc      1018 Jan 14 07:16 memory_monitor_summary.json
[2026-01-14 07:17:11] -rw------- 1 boinc boinc    239224 Jan 14 07:16 log.48215263._005970.job.log.tgz.1
[2026-01-14 07:17:11] -rw------- 1 boinc boinc      7744 Jan 14 07:16 heartbeat.json
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc      8192 Jan 14 07:17 boinc_mmap_file
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc        26 Jan 14 07:17 wrapper_checkpoint.txt
[2026-01-14 07:17:11] -rw------- 1 boinc boinc      4824 Jan 14 07:17 pilotlog.txt
[2026-01-14 07:17:11] -rw------- 1 boinc boinc    507305 Jan 14 07:17 log.48215263._005970.job.log.1
[2026-01-14 07:17:11] -rw------- 1 boinc boinc       357 Jan 14 07:17 output.list
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc       620 Jan 14 07:17 runtime_log
[2026-01-14 07:17:11] -rw------- 1 boinc boinc    768000 Jan 14 07:17 result.tar.gz
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc      8912 Jan 14 07:17 runtime_log.err
[2026-01-14 07:17:11] -rw------- 1 boinc boinc       659 Jan 14 07:17 XZpKDmLb1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ0oKDmx6maEn.diag
[2026-01-14 07:17:11] -rw-r--r-- 1 boinc boinc     11408 Jan 14 07:17 stderr.txt
[2026-01-14 07:17:11] HITS file was successfully produced:
[2026-01-14 07:17:11] -rw------- 1 boinc boinc 151603120 Jan 14 07:16 shared/HITS.pool.root.1
[2026-01-14 07:17:11]  *** Contents of shared directory: ***
[2026-01-14 07:17:11] total 727324
[2026-01-14 07:17:11] -rw-r--r-- 2 boinc boinc 591782329 Jan 14 06:20 ATLAS.root_0
[2026-01-14 07:17:11] -rw-r--r-- 2 boinc boinc    592396 Jan 14 06:20 input.tar.gz
[2026-01-14 07:17:11] -rw-r--r-- 2 boinc boinc     15847 Jan 14 06:20 start_atlas.sh
[2026-01-14 07:17:11] -rw------- 1 boinc boinc 151603120 Jan 14 07:16 HITS.pool.root.1
[2026-01-14 07:17:11] -rw------- 1 boinc boinc    768000 Jan 14 07:17 result.tar.gz
07:17:13 (1148760): run_atlas exited; CPU time 9408.640495
07:17:13 (1148760): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN