Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:24:35 (1126211): wrapper (7.7.26015): starting
05:24:35 (1126211): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 05:24:35] Arguments: --nthreads 3
[2026-01-14 05:24:35] Threads: 3
[2026-01-14 05:24:35] Checking for CVMFS
[2026-01-14 05:24:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 05:24:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 05:24:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 05:24:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 05:24:36] 2.9.2.0 1126407 0 29624 155118 4 1 24125649 36864001 0 130560 0 0 0.000 1335 21532 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 05:24:36] CVMFS is ok
[2026-01-14 05:24:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 05:24:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 05:24:36] Further information can be found at the LHC@home message board.
[2026-01-14 05:24:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 05:24:36] Checking for apptainer binary...
[2026-01-14 05:24:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 05:24:36] Running /usr/bin/apptainer --version
[2026-01-14 05:24:36] apptainer version 1.4.1-1.1
[2026-01-14 05:24:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 05:24:36] atlasA223
[2026-01-14 05:24:36] apptainer works
[2026-01-14 05:24:36] Set ATHENA_PROC_NUMBER=3
[2026-01-14 05:24:36] Set ATHENA_CORE_NUMBER=3
[2026-01-14 05:24:36] Starting ATLAS job with PandaID=6969268700
[2026-01-14 05:24:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 06:20:53]  *** The last 200 lines of the pilot log: ***
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | job 6969268700 has completed (purged errors)
[2026-01-14 06:20:53] 2026-01-14 05:20:06,199 | INFO     | overall cleanup function is called
[2026-01-14 06:20:53] 2026-01-14 05:20:07,206 | INFO     | --- collectZombieJob: --- 10, [1136932]
[2026-01-14 06:20:53] 2026-01-14 05:20:07,206 | INFO     | zombie collector waiting for pid 1136932
[2026-01-14 06:20:53] 2026-01-14 05:20:07,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 06:20:53] 2026-01-14 05:20:07,206 | INFO     | collected zombie processes
[2026-01-14 06:20:53] 2026-01-14 05:20:07,206 | INFO     | will attempt to kill all subprocesses of pid=1136932
[2026-01-14 06:20:53] 2026-01-14 05:20:07,257 | INFO     | process IDs to be killed: [1136932] (in reverse order)
[2026-01-14 06:20:53] 2026-01-14 05:20:07,283 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 06:20:53] 2026-01-14 05:20:07,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 06:20:53] 2026-01-14 05:20:07,285 | INFO     | did not find any defunct processes belonging to 1136932
[2026-01-14 06:20:53] 2026-01-14 05:20:07,286 | INFO     | did not find any defunct processes belonging to 1136932
[2026-01-14 06:20:53] 2026-01-14 05:20:07,286 | INFO     | ready for new job
[2026-01-14 06:20:53] 2026-01-14 05:20:07,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 06:20:53] 2026-01-14 05:20:07,287 | INFO     | ***************************************
[2026-01-14 06:20:53] 2026-01-14 05:20:07,287 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 06:20:53] 2026-01-14 05:20:07,287 | INFO     | ***************************************
[2026-01-14 06:20:53] 2026-01-14 05:20:07,287 | INFO     | 
[2026-01-14 06:20:53] 2026-01-14 05:20:07,287 | INFO     | architecture information:
[2026-01-14 06:20:53] 2026-01-14 05:20:07,287 | INFO     | executing command: cat /etc/os-release
[2026-01-14 06:20:53] 2026-01-14 05:20:07,296 | INFO     | cat /etc/os-release:
[2026-01-14 06:20:53] NAME="CentOS Linux"
[2026-01-14 06:20:53] VERSION="7 (Core)"
[2026-01-14 06:20:53] ID="centos"
[2026-01-14 06:20:53] ID_LIKE="rhel fedora"
[2026-01-14 06:20:53] VERSION_ID="7"
[2026-01-14 06:20:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 06:20:53] ANSI_COLOR="0;31"
[2026-01-14 06:20:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 06:20:53] HOME_URL="https://www.centos.org/"
[2026-01-14 06:20:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 06:20:53] 
[2026-01-14 06:20:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 06:20:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 06:20:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 06:20:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 06:20:53] 
[2026-01-14 06:20:53] 2026-01-14 05:20:07,296 | INFO     | ***************************************
[2026-01-14 06:20:53] 2026-01-14 05:20:07,798 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 06:20:53] 2026-01-14 05:20:07,810 | INFO     | sufficient remaining disk space (381118578688 B)
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | INFO     | update_server=False
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 06:20:53] 2026-01-14 05:20:07,811 | INFO     | aborting loop
[2026-01-14 06:20:53] 2026-01-14 05:20:07,953 | INFO     | all job control threads have been joined
[2026-01-14 06:20:53] 2026-01-14 05:20:08,381 | INFO     | all data control threads have been joined
[2026-01-14 06:20:53] 2026-01-14 05:20:08,816 | INFO     | [job] retrieve thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:08,816 | INFO     | [job] queue monitor thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:08,817 | INFO     | [job] job monitor thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:08,959 | INFO     | [job] control thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:09,014 | INFO     | [payload] failed_post thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:09,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 06:20:53] 2026-01-14 05:20:09,108 | INFO     | all payload control threads have been joined
[2026-01-14 06:20:53] 2026-01-14 05:20:09,254 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:09,387 | INFO     | [data] control thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:09,415 | INFO     | [data] copytool_in thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:09,984 | INFO     | [payload] validate_post thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:09,985 | INFO     | [job] validate thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:10,014 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:10,087 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:10,114 | INFO     | [payload] control thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:10,366 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 06:20:53] 2026-01-14 05:20:11,056 | INFO     | [data] copytool_out thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:14,373 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:18,708 | INFO     | job.realtimelogging is not enabled
[2026-01-14 06:20:53] 2026-01-14 05:20:19,714 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 06:20:53] 2026-01-14 05:20:47,508 | INFO     | [monitor] cgroup control has ended
[2026-01-14 06:20:53] 2026-01-14 05:20:47,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140415268489024)>', '<ExcThread(monitor, started 140414426281728)>']
[2026-01-14 06:20:53] 2026-01-14 05:20:48,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 06:20:53] 2026-01-14 05:20:48,017 | INFO     | [monitor] control thread has ended
[2026-01-14 06:20:53] 2026-01-14 05:20:52,984 | INFO     | all workflow threads have been joined
[2026-01-14 06:20:53] 2026-01-14 05:20:52,985 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 06:20:53] 2026-01-14 05:20:52,985 | INFO     | traces error code: 0
[2026-01-14 06:20:53] 2026-01-14 05:20:52,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 06:20:53] 2026-01-14 05:20:53,036 [wrapper] ==== pilot stdout END ====
[2026-01-14 06:20:53] 2026-01-14 05:20:53,038 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 06:20:53] 2026-01-14 05:20:53,040 [wrapper] pilotpid: 1130484
[2026-01-14 06:20:53] 2026-01-14 05:20:53,043 [wrapper] Pilot exit status: 0
[2026-01-14 06:20:53] 2026-01-14 05:20:53,050 [wrapper] pandaids: 6969268700
[2026-01-14 06:20:53] 2026-01-14 05:20:53,068 [wrapper] cleanup supervisor_pilot 1146153 1130485
[2026-01-14 06:20:53] 2026-01-14 05:20:53,070 [wrapper] Test setup, not cleaning
[2026-01-14 06:20:53] 2026-01-14 05:20:53,073 [wrapper] apfmon messages muted
[2026-01-14 06:20:53] 2026-01-14 05:20:53,075 [wrapper] ==== wrapper stdout END ====
[2026-01-14 06:20:53] 2026-01-14 05:20:53,077 [wrapper] ==== wrapper stderr END ====
[2026-01-14 06:20:53]  *** Error codes and diagnostics ***
[2026-01-14 06:20:53]     "exeErrorCode": 0,
[2026-01-14 06:20:53]     "exeErrorDiag": "",
[2026-01-14 06:20:53]     "pilotErrorCode": 0,
[2026-01-14 06:20:53]     "pilotErrorDiag": "",
[2026-01-14 06:20:53]  *** Listing of results directory ***
[2026-01-14 06:20:53] total 730968
[2026-01-14 06:20:53] -rwx------ 1 boinc boinc     36322 Jan 13 22:59 runpilot2-wrapper.sh
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:12 pilot3.tar.gz
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:20 queuedata.json
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc       100 Jan 14 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 06:20:53] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 05:24 run_atlas
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc       105 Jan 14 05:24 job.xml
[2026-01-14 06:20:53] -rw-r--r-- 2 boinc boinc 592018911 Jan 14 05:24 EVNT.32794306._000241.pool.root.1
[2026-01-14 06:20:53] -rw-r--r-- 2 boinc boinc    592392 Jan 14 05:24 input.tar.gz
[2026-01-14 06:20:53] -rw-r--r-- 2 boinc boinc     15847 Jan 14 05:24 start_atlas.sh
[2026-01-14 06:20:53] drwxrwx--x 2 boinc boinc      4096 Jan 14 05:24 shared
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc         0 Jan 14 05:24 boinc_setup_complete
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc      6446 Jan 14 05:24 init_data.xml
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc         0 Jan 14 05:24 boinc_lockfile
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc      2504 Jan 14 05:24 pandaJob.out
[2026-01-14 06:20:53] -rw------- 1 boinc boinc    997226 Jan 14 05:24 agis_schedconf.cvmfs.json
[2026-01-14 06:20:53] -rw------- 1 boinc boinc   1516246 Jan 14 05:24 agis_ddmendpoints.agis.ALL.json
[2026-01-14 06:20:53] drwx------ 5 boinc boinc      4096 Jan 14 05:24 pilot3
[2026-01-14 06:20:53] -rw------- 1 boinc boinc 151119274 Jan 14 06:19 HITS.48215263._006008.pool.root.1
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc       529 Jan 14 06:19 boinc_task_state.xml
[2026-01-14 06:20:53] -rw------- 1 boinc boinc      1010 Jan 14 06:19 memory_monitor_summary.json
[2026-01-14 06:20:53] -rw------- 1 boinc boinc    223431 Jan 14 06:19 log.48215263._006008.job.log.tgz.1
[2026-01-14 06:20:53] -rw------- 1 boinc boinc        95 Jan 14 06:20 pilot_heartbeat.json
[2026-01-14 06:20:53] -rw------- 1 boinc boinc      7742 Jan 14 06:20 heartbeat.json
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc      8192 Jan 14 06:20 boinc_mmap_file
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc        26 Jan 14 06:20 wrapper_checkpoint.txt
[2026-01-14 06:20:53] -rw------- 1 boinc boinc      4628 Jan 14 06:20 pilotlog.txt
[2026-01-14 06:20:53] -rw------- 1 boinc boinc    506127 Jan 14 06:20 log.48215263._006008.job.log.1
[2026-01-14 06:20:53] -rw------- 1 boinc boinc       357 Jan 14 06:20 output.list
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc       620 Jan 14 06:20 runtime_log
[2026-01-14 06:20:53] -rw------- 1 boinc boinc    747520 Jan 14 06:20 result.tar.gz
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc      8912 Jan 14 06:20 runtime_log.err
[2026-01-14 06:20:53] -rw------- 1 boinc boinc       659 Jan 14 06:20 DCALDmLb1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme0oKDm0wCykn.diag
[2026-01-14 06:20:53] -rw-r--r-- 1 boinc boinc     12555 Jan 14 06:20 stderr.txt
[2026-01-14 06:20:53] HITS file was successfully produced:
[2026-01-14 06:20:53] -rw------- 1 boinc boinc 151119274 Jan 14 06:19 shared/HITS.pool.root.1
[2026-01-14 06:20:53]  *** Contents of shared directory: ***
[2026-01-14 06:20:53] total 727060
[2026-01-14 06:20:53] -rw-r--r-- 2 boinc boinc 592018911 Jan 14 05:24 ATLAS.root_0
[2026-01-14 06:20:53] -rw-r--r-- 2 boinc boinc    592392 Jan 14 05:24 input.tar.gz
[2026-01-14 06:20:53] -rw-r--r-- 2 boinc boinc     15847 Jan 14 05:24 start_atlas.sh
[2026-01-14 06:20:53] -rw------- 1 boinc boinc 151119274 Jan 14 06:19 HITS.pool.root.1
[2026-01-14 06:20:53] -rw------- 1 boinc boinc    747520 Jan 14 06:20 result.tar.gz
06:20:54 (1126211): run_atlas exited; CPU time 9340.180222
06:20:54 (1126211): called boinc_finish(0)

</stderr_txt>
]]>

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