Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:33:36 (306349): wrapper (7.7.26015): starting
03:33:36 (306349): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 03:33:36] Arguments: --nthreads 4
[2026-01-15 03:33:36] Threads: 4
[2026-01-15 03:33:36] Checking for CVMFS
[2026-01-15 03:33:36] No cvmfs_config command found, will try listing directly
[2026-01-15 03:33:36] CVMFS is ok
[2026-01-15 03:33:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 03:33:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 03:33:36] Further information can be found at the LHC@home message board.
[2026-01-15 03:33:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 03:33:36] Checking for apptainer binary...
[2026-01-15 03:33:36] which: no apptainer in ((null))
[2026-01-15 03:33:36] apptainer is not installed, using version from CVMFS
[2026-01-15 03:33:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 03:33:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-01-15 03:33:36] apptainer works
[2026-01-15 03:33:36] Set ATHENA_PROC_NUMBER=4
[2026-01-15 03:33:36] Set ATHENA_CORE_NUMBER=4
[2026-01-15 03:33:36] Starting ATLAS job with PandaID=6969260087
[2026-01-15 03:33:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 05:18:43]  *** The last 200 lines of the pilot log: ***
[2026-01-15 05:18:43]  surl=/scratch/boinc/var/slot92/slots/0/PanDA_Pilot-6969260087/log.48215263._002186.job.log.tgz.1
[2026-01-15 05:18:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/78/log.48215263._002186.job.log.tgz.1
[2026-01-15 05:18:43]  workdir=None
[2026-01-15 05:18:43] ]
[2026-01-15 05:18:43] 2026-01-15 04:12:54,732 | INFO     | transferring file log.48215263._002186.job.log.tgz.1 from /scratch/boinc/var/slot92/slots/0/PanDA_Pilot-6969260087/log.48215263._002186.job.log.tgz.1 to /scratch/b
[2026-01-15 05:18:43] 2026-01-15 04:12:54,733 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot92/slots/0/PanDA_Pilot-6969260087/log.48215263._002186.job.log.tgz.1 /scratch/boinc/var/slot92/slots/0/lo
[2026-01-15 05:18:43] 2026-01-15 04:12:54,762 | INFO     | adding to output.list: log.48215263._002186.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/78/log.48215263._002186.job.log.tg
[2026-01-15 05:18:43] 2026-01-15 04:12:54,763 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 05:18:43] 2026-01-15 04:12:54,763 | INFO     | summary of transferred files:
[2026-01-15 05:18:43] 2026-01-15 04:12:54,763 | INFO     |  -- lfn=log.48215263._002186.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 05:18:43] 2026-01-15 04:12:54,764 | INFO     | stage-out finished correctly
[2026-01-15 05:18:43] 2026-01-15 04:12:54,862 | INFO     | monitor loop #411: job 0:6969260087 is in state 'finished'
[2026-01-15 05:18:43] 2026-01-15 04:12:54,863 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 05:18:43] 2026-01-15 04:12:55,602 | INFO     | PID=322885 has CPU usage=21.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 05:18:43] 2026-01-15 04:12:55,602 | INFO     | .. there are 8 such processes running
[2026-01-15 05:18:43] 2026-01-15 04:12:56,603 | INFO     | time since job start (5947s) is within the limit (349056.0s)
[2026-01-15 05:18:43] 2026-01-15 04:12:57,366 | INFO     | monitor loop #412: job 0:6969260087 is in state 'finished'
[2026-01-15 05:18:43] 2026-01-15 04:12:57,366 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 05:18:43] 2026-01-15 04:12:57,547 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 05:18:43] 2026-01-15 04:12:57,832 | INFO     | job 6969260087 has state=finished
[2026-01-15 05:18:43] 2026-01-15 04:12:57,833 | INFO     | preparing for final server update for job 6969260087 in state='finished'
[2026-01-15 05:18:43] 2026-01-15 04:12:57,833 | INFO     | this job has now completed (state=finished)
[2026-01-15 05:18:43] 2026-01-15 04:12:57,834 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 05:18:43] 2026-01-15 04:12:57,834 | INFO     | log transfer has been attempted: DONE
[2026-01-15 05:18:43] 2026-01-15 04:12:57,834 | INFO     | job 6969260087 has finished - writing final server update
[2026-01-15 05:18:43] 2026-01-15 04:12:57,834 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2485183/.job.ad'
[2026-01-15 05:18:43] 2026-01-15 04:12:57,834 | INFO     | total number of processed events: 400 (read)
[2026-01-15 05:18:43] 2026-01-15 04:12:57,835 | INFO     | executing command: lscpu
[2026-01-15 05:18:43] 2026-01-15 04:12:57,934 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 05:18:43] 2026-01-15 04:12:58,614 | INFO     | time since job start (5949s) is within the limit (349056.0s)
[2026-01-15 05:18:43] 2026-01-15 04:12:59,869 | INFO     | monitor loop #413: job 0:6969260087 is in state 'finished'
[2026-01-15 05:18:43] 2026-01-15 04:12:59,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 05:18:43] 2026-01-15 04:13:00,620 | INFO     | time since job start (5951s) is within the limit (349056.0s)
[2026-01-15 05:18:43] 2026-01-15 04:13:02,374 | INFO     | monitor loop #414: job 0:6969260087 is in state 'finished'
[2026-01-15 05:18:43] 2026-01-15 04:13:02,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 05:18:43] 2026-01-15 04:13:02,626 | INFO     | time since job start (5953s) is within the limit (349056.0s)
[2026-01-15 05:18:43] 2026-01-15 04:13:04,036 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 05:18:43] 2026-01-15 04:13:04,054 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2707.6900078124995
[2026-01-15 05:18:43] 2026-01-15 04:13:04,078 | INFO     | using path: /scratch/boinc/var/slot92/slots/0/PanDA_Pilot-6969260087/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 05:18:43] 2026-01-15 04:13:04,079 | INFO     | extracted standard info from prmon json
[2026-01-15 05:18:43] 2026-01-15 04:13:04,079 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 05:18:43] 2026-01-15 04:13:04,079 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 05:18:43] 2026-01-15 04:13:04,079 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 05:18:43] 2026-01-15 04:13:04,079 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 05:18:43] 2026-01-15 04:13:04,082 | INFO     | fitting pss+swap vs Time
[2026-01-15 05:18:43] 2026-01-15 04:13:04,082 | INFO     | sum of square deviations: 226022842.5
[2026-01-15 05:18:43] 2026-01-15 04:13:04,082 | INFO     | sum of deviations: -2246524622.5000005
[2026-01-15 05:18:43] 2026-01-15 04:13:04,082 | INFO     | mean x: 1768447484.5
[2026-01-15 05:18:43] 2026-01-15 04:13:04,082 | INFO     | mean y: 2369566.033333333
[2026-01-15 05:18:43] 2026-01-15 04:13:04,083 | INFO     | intersect: 17579623146.177288
[2026-01-15 05:18:43] 2026-01-15 04:13:04,083 | INFO     | chi2: 0.005952881172326986
[2026-01-15 05:18:43] 2026-01-15 04:13:04,083 | INFO     | current memory leak: -9.94 B/s (using 90 data points, chi2=0.01)
[2026-01-15 05:18:43] 2026-01-15 04:13:04,083 | INFO     | could have reported an average CPU frequency of 2720 MHz (7 samples)
[2026-01-15 05:18:43] 2026-01-15 04:13:04,083 | INFO     | ..............................
[2026-01-15 05:18:43] 2026-01-15 04:13:04,084 | INFO     | . Timing measurements:
[2026-01-15 05:18:43] 2026-01-15 04:13:04,084 | INFO     | . get job = 0 s
[2026-01-15 05:18:43] 2026-01-15 04:13:04,084 | INFO     | . initial setup = 1 s
[2026-01-15 05:18:43] 2026-01-15 04:13:04,084 | INFO     | . payload setup = 9 s
[2026-01-15 05:18:43] 2026-01-15 04:13:04,084 | INFO     | . stage-in = 0 s
[2026-01-15 05:18:43] 2026-01-15 04:13:04,084 | INFO     | . payload execution = 5912 s
[2026-01-15 05:18:43] 2026-01-15 04:13:04,084 | INFO     | . stage-out = 0 s
[2026-01-15 05:18:43] 2026-01-15 04:13:04,084 | INFO     | . log creation = 0 s
[2026-01-15 05:18:43] 2026-01-15 04:13:04,084 | INFO     | ..............................
[2026-01-15 05:18:43] 2026-01-15 04:13:04,492 | INFO     | 
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | job summary report
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | --------------------------------------------------
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | PanDA job id: 6969260087
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | task id: 48215263
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | errors: (none)
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | pilot state: finished 
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | transexitcode: 0
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | exeerrorcode: 0
[2026-01-15 05:18:43] 2026-01-15 04:13:04,493 | INFO     | exeerrordiag: 
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | exitcode: 0
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | exitmsg: OK
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | cpuconsumptiontime: 22306 s
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | nevents: 400
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | neventsw: 0
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | pid: 369024
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | pgrp: 369024
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | corecount: 4
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | event service: False
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | sizes: {0: 2283783, 1: 2283982, 7: 2284244, 12: 2284272, 5925: 2311336, 5926: 2311335, 5927: 2320539, 5930: 2320595, 5936: 2320789}
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | --------------------------------------------------
[2026-01-15 05:18:43] 2026-01-15 04:13:04,494 | INFO     | 
[2026-01-15 05:18:43] 2026-01-15 04:13:04,495 | INFO     | executing command: ls -lF /scratch/boinc/var/slot92/slots/0
[2026-01-15 05:18:43] 2026-01-15 04:13:04,525 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,525 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,525 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,525 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,525 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,525 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 05:18:43] 2026-01-15 04:13:04,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,527 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 05:18:43] 2026-01-15 04:13:04,527 | INFO     | job 6969260087 has completed (purged errors)
[2026-01-15 05:18:43] 2026-01-15 04:13:04,527 | INFO     | overall cleanup function is called
[2026-01-15 05:18:43] 2026-01-15 04:13:05,536 | INFO     | --- collectZombieJob: --- 10, [369024]
[2026-01-15 05:18:43] 2026-01-15 04:13:05,536 | INFO     | zombie collector waiting for pid 369024
[2026-01-15 05:18:43] 2026-01-15 04:13:05,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 05:18:43] 2026-01-15 04:13:05,536 | INFO     | collected zombie processes
[2026-01-15 05:18:43] 2026-01-15 04:13:05,536 | INFO     | will attempt to kill all subprocesses of pid=369024
[2026-01-15 05:18:43] 2026-01-15 04:13:06,210 | INFO     | process IDs to be killed: [369024] (in reverse order)
[2026-01-15 05:18:43] 2026-01-15 04:13:06,451 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 05:18:43] 2026-01-15 04:13:06,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 05:18:43] 2026-01-15 04:13:06,481 | INFO     | did not find any defunct processes belonging to 369024
[2026-01-15 05:18:43] 2026-01-15 04:13:06,505 | INFO     | did not find any defunct processes belonging to 369024
[2026-01-15 05:18:43] 2026-01-15 04:13:06,505 | INFO     | ready for new job
[2026-01-15 05:18:43] 2026-01-15 04:13:06,505 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 05:18:43] 2026-01-15 04:13:06,508 | INFO     | ***************************************
[2026-01-15 05:18:43] 2026-01-15 04:13:06,508 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 05:18:43] 2026-01-15 04:13:06,508 | INFO     | ***************************************
[2026-01-15 05:18:43] 2026-01-15 04:13:06,508 | INFO     | 
[2026-01-15 05:18:43] 2026-01-15 04:13:06,516 | INFO     | architecture information:
[2026-01-15 05:18:43] 2026-01-15 04:13:06,517 | INFO     | executing command: cat /etc/os-release
[2026-01-15 05:18:43] 2026-01-15 04:13:06,542 | INFO     | cat /etc/os-release:
[2026-01-15 05:18:43] NAME="CentOS Linux"
[2026-01-15 05:18:43] VERSION="7 (Core)"
[2026-01-15 05:18:43] ID="centos"
[2026-01-15 05:18:43] ID_LIKE="rhel fedora"
[2026-01-15 05:18:43] VERSION_ID="7"
[2026-01-15 05:18:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 05:18:43] ANSI_COLOR="0;31"
[2026-01-15 05:18:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 05:18:43] HOME_URL="https://www.centos.org/"
[2026-01-15 05:18:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 05:18:43] 
[2026-01-15 05:18:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 05:18:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 05:18:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 05:18:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 05:18:43] 
[2026-01-15 05:18:43] 2026-01-15 04:13:06,543 | INFO     | ***************************************
[2026-01-15 05:18:43] 2026-01-15 04:13:07,046 | INFO     | executing command: df -mP /scratch/boinc/var/slot92/slots/0
[2026-01-15 05:18:43] 2026-01-15 04:13:07,072 | INFO     | sufficient remaining disk space (3310454046720 B)
[2026-01-15 05:18:43] 2026-01-15 04:13:07,073 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 05:18:43] 2026-01-15 04:13:07,073 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 05:18:43] 2026-01-15 04:13:07,073 | INFO     | update_server=False
[2026-01-15 05:18:43] 2026-01-15 04:13:07,073 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 05:18:43] 2026-01-15 04:13:07,166 | INFO     | all payload control threads have been joined
[2026-01-15 05:18:43] 2026-01-15 04:13:07,367 | INFO     | all data control threads have been joined
[2026-01-15 05:18:43] 2026-01-15 04:13:07,384 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 05:18:43] 2026-01-15 04:13:07,384 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 05:18:43] 2026-01-15 04:13:07,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 05:18:43] 2026-01-15 04:13:07,384 | INFO     | will abort loop
[2026-01-15 05:18:43] 2026-01-15 04:13:07,392 | INFO     | all job control threads have been joined
[2026-01-15 05:18:43] 2026-01-15 04:13:07,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 05:18:43] 2026-01-15 04:13:08,078 | INFO     | [job] retrieve thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:08,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 05:18:43] 2026-01-15 04:13:08,172 | INFO     | [payload] control thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:08,266 | INFO     | [data] copytool_in thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:08,376 | INFO     | [data] control thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:08,390 | INFO     | [job] job monitor thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:08,398 | INFO     | [job] control thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:08,640 | INFO     | [job] validate thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:08,781 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:08,787 | INFO     | [payload] validate_post thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:08,953 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:09,112 | INFO     | [payload] failed_post thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:09,129 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:09,190 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 05:18:43] 2026-01-15 04:13:09,281 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:09,870 | INFO     | [data] copytool_out thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:10,196 | INFO     | [job] queue monitor thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:12,158 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 05:18:43] 2026-01-15 04:13:36,639 | INFO     | PID=322885 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 05:18:43] 2026-01-15 04:13:36,640 | INFO     | .. there are 8 such processes running
[2026-01-15 05:18:43] 2026-01-15 04:13:36,643 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 05:18:43] 2026-01-15 04:13:36,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 05:18:43] 2026-01-15 04:13:36,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 05:18:43] 2026-01-15 04:13:58,820 | INFO     | [monitor] cgroup control has ended
[2026-01-15 05:18:43] 2026-01-15 04:14:00,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22948675934016)>', '<ExcThread(monitor, started 22948429645568)>']
[2026-01-15 05:18:43] 2026-01-15 04:14:00,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 05:18:43] 2026-01-15 04:14:00,764 | INFO     | [monitor] control thread has ended
[2026-01-15 05:18:43] 2026-01-15 04:14:05,311 | INFO     | all workflow threads have been joined
[2026-01-15 05:18:43] 2026-01-15 04:14:05,311 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 05:18:43] 2026-01-15 04:14:05,312 | INFO     | traces error code: 0
[2026-01-15 05:18:43] 2026-01-15 04:14:05,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 05:18:43] 2026-01-15 04:14:05,511 [wrapper] ==== pilot stdout END ====
[2026-01-15 05:18:43] 2026-01-15 04:14:05,515 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 05:18:43] 2026-01-15 04:14:05,518 [wrapper] pilotpid: 322885
[2026-01-15 05:18:43] 2026-01-15 04:14:05,521 [wrapper] Pilot exit status: 0
[2026-01-15 05:18:43] 2026-01-15 04:14:05,534 [wrapper] pandaids: 6969260087
[2026-01-15 05:18:43] 2026-01-15 04:14:05,701 [wrapper] cleanup supervisor_pilot  577999 322886
[2026-01-15 05:18:43] 2026-01-15 04:14:05,705 [wrapper] Test setup, not cleaning
[2026-01-15 05:18:43] 2026-01-15 04:14:05,709 [wrapper] apfmon messages muted
[2026-01-15 05:18:43] 2026-01-15 04:14:05,712 [wrapper] ==== wrapper stdout END ====
[2026-01-15 05:18:43] 2026-01-15 04:14:05,716 [wrapper] ==== wrapper stderr END ====
[2026-01-15 05:18:43]  *** Error codes and diagnostics ***
[2026-01-15 05:18:43]     "exeErrorCode": 0,
[2026-01-15 05:18:43]     "exeErrorDiag": "",
[2026-01-15 05:18:43]     "pilotErrorCode": 0,
[2026-01-15 05:18:43]     "pilotErrorDiag": "",
[2026-01-15 05:18:43]  *** Listing of results directory ***
[2026-01-15 05:18:43] total 734260
[2026-01-15 05:18:43] -rwx------ 1 boinc boinc     36322 Jan 13 22:58 runpilot2-wrapper.sh
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:05 pilot3.tar.gz
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:12 queuedata.json
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc       100 Jan 15 03:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 05:18:43] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 03:33 run_atlas
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc       105 Jan 15 03:33 job.xml
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc      6690 Jan 15 03:33 init_data.xml
[2026-01-15 05:18:43] -rw-r--r-- 2 boinc boinc 596017666 Jan 15 03:33 EVNT.32794306._000088.pool.root.1
[2026-01-15 05:18:43] -rw-r--r-- 2 boinc boinc     15847 Jan 15 03:33 start_atlas.sh
[2026-01-15 05:18:43] drwxrwx--x 2 boinc boinc      4096 Jan 15 03:33 shared
[2026-01-15 05:18:43] -rw-r--r-- 2 boinc boinc    592390 Jan 15 03:33 input.tar.gz
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc         0 Jan 15 03:33 boinc_lockfile
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc      2504 Jan 15 03:33 pandaJob.out
[2026-01-15 05:18:43] -rw------- 1 boinc boinc    999480 Jan 15 03:33 agis_schedconf.cvmfs.json
[2026-01-15 05:18:43] -rw------- 1 boinc boinc   1516246 Jan 15 03:33 agis_ddmendpoints.agis.ALL.json
[2026-01-15 05:18:43] drwx------ 5 boinc boinc      4096 Jan 15 03:33 pilot3
[2026-01-15 05:18:43] -rw------- 1 boinc boinc 149661755 Jan 15 05:12 HITS.48215263._002186.pool.root.1
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc       529 Jan 15 05:12 boinc_task_state.xml
[2026-01-15 05:18:43] -rw------- 1 boinc boinc      1029 Jan 15 05:12 memory_monitor_summary.json
[2026-01-15 05:18:43] -rw------- 1 boinc boinc    282393 Jan 15 05:12 log.48215263._002186.job.log.tgz.1
[2026-01-15 05:18:43] -rw------- 1 boinc boinc      7776 Jan 15 05:13 heartbeat.json
[2026-01-15 05:18:43] -rw------- 1 boinc boinc        95 Jan 15 05:13 pilot_heartbeat.json
[2026-01-15 05:18:43] -rw------- 1 boinc boinc      5019 Jan 15 05:14 pilotlog.txt
[2026-01-15 05:18:43] -rw------- 1 boinc boinc    853817 Jan 15 05:14 log.48215263._002186.job.log.1
[2026-01-15 05:18:43] -rw------- 1 boinc boinc       357 Jan 15 05:14 output.list
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc       620 Jan 15 05:14 runtime_log
[2026-01-15 05:18:43] -rw------- 1 boinc boinc   1157120 Jan 15 05:14 result.tar.gz
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc      9205 Jan 15 05:14 runtime_log.err
[2026-01-15 05:18:43] -rw------- 1 boinc boinc       662 Jan 15 05:14 HwGMDmSa1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBnoKDmhjVDmn.diag
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc        26 Jan 15 05:18 wrapper_checkpoint.txt
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc      8192 Jan 15 05:18 boinc_mmap_file
[2026-01-15 05:18:43] -rw-r--r-- 1 boinc boinc     22279 Jan 15 05:18 stderr.txt
[2026-01-15 05:18:43] HITS file was successfully produced:
[2026-01-15 05:18:43] -rw------- 1 boinc boinc 149661755 Jan 15 05:12 shared/HITS.pool.root.1
[2026-01-15 05:18:43]  *** Contents of shared directory: ***
[2026-01-15 05:18:43] total 729944
[2026-01-15 05:18:43] -rw-r--r-- 2 boinc boinc 596017666 Jan 15 03:33 ATLAS.root_0
[2026-01-15 05:18:43] -rw-r--r-- 2 boinc boinc     15847 Jan 15 03:33 start_atlas.sh
[2026-01-15 05:18:43] -rw-r--r-- 2 boinc boinc    592390 Jan 15 03:33 input.tar.gz
[2026-01-15 05:18:43] -rw------- 1 boinc boinc 149661755 Jan 15 05:12 HITS.pool.root.1
[2026-01-15 05:18:43] -rw------- 1 boinc boinc   1157120 Jan 15 05:14 result.tar.gz
05:18:44 (306349): run_atlas exited; CPU time 22676.964936
05:18:44 (306349): called boinc_finish(0)

</stderr_txt>
]]>

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