Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:04:38 (3559420): wrapper (7.7.26015): starting
06:04:38 (3559420): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 06:04:38] Arguments: --nthreads 3
[2026-01-14 06:04:38] Threads: 3
[2026-01-14 06:04:38] Checking for CVMFS
[2026-01-14 06:04:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 06:04:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 06:04:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 06:04:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 06:04:38] 2.9.2.0 3536909 55 50788 155118 0 57 22675999 36864001 0 130560 0 60237 99.956 5669 26245 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 06:04:38] CVMFS is ok
[2026-01-14 06:04:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 06:04:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 06:04:38] Further information can be found at the LHC@home message board.
[2026-01-14 06:04:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 06:04:38] Checking for apptainer binary...
[2026-01-14 06:04:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 06:04:38] Running /usr/bin/apptainer --version
[2026-01-14 06:04:38] apptainer version 1.4.1-1.1
[2026-01-14 06:04:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 06:04:38] magicA246
[2026-01-14 06:04:38] apptainer works
[2026-01-14 06:04:38] Set ATHENA_PROC_NUMBER=3
[2026-01-14 06:04:38] Set ATHENA_CORE_NUMBER=3
[2026-01-14 06:04:38] Starting ATLAS job with PandaID=6969266445
[2026-01-14 06:04:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 06:57:56]  *** The last 200 lines of the pilot log: ***
[2026-01-14 06:57:56] 2026-01-14 05:57:25,268 | INFO     | zombie collector waiting for pid 3569599
[2026-01-14 06:57:56] 2026-01-14 05:57:25,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 06:57:56] 2026-01-14 05:57:25,268 | INFO     | collected zombie processes
[2026-01-14 06:57:56] 2026-01-14 05:57:25,268 | INFO     | will attempt to kill all subprocesses of pid=3569599
[2026-01-14 06:57:56] 2026-01-14 05:57:25,309 | INFO     | process IDs to be killed: [3569599] (in reverse order)
[2026-01-14 06:57:56] 2026-01-14 05:57:25,336 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 06:57:56] 2026-01-14 05:57:25,336 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 06:57:56] 2026-01-14 05:57:25,337 | INFO     | did not find any defunct processes belonging to 3569599
[2026-01-14 06:57:56] 2026-01-14 05:57:25,338 | INFO     | did not find any defunct processes belonging to 3569599
[2026-01-14 06:57:56] 2026-01-14 05:57:25,338 | INFO     | ready for new job
[2026-01-14 06:57:56] 2026-01-14 05:57:25,338 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 06:57:56] 2026-01-14 05:57:25,339 | INFO     | ***************************************
[2026-01-14 06:57:56] 2026-01-14 05:57:25,339 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 06:57:56] 2026-01-14 05:57:25,339 | INFO     | ***************************************
[2026-01-14 06:57:56] 2026-01-14 05:57:25,339 | INFO     | 
[2026-01-14 06:57:56] 2026-01-14 05:57:25,339 | INFO     | architecture information:
[2026-01-14 06:57:56] 2026-01-14 05:57:25,340 | INFO     | executing command: cat /etc/os-release
[2026-01-14 06:57:56] 2026-01-14 05:57:25,349 | INFO     | cat /etc/os-release:
[2026-01-14 06:57:56] NAME="CentOS Linux"
[2026-01-14 06:57:56] VERSION="7 (Core)"
[2026-01-14 06:57:56] ID="centos"
[2026-01-14 06:57:56] ID_LIKE="rhel fedora"
[2026-01-14 06:57:56] VERSION_ID="7"
[2026-01-14 06:57:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 06:57:56] ANSI_COLOR="0;31"
[2026-01-14 06:57:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 06:57:56] HOME_URL="https://www.centos.org/"
[2026-01-14 06:57:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 06:57:56] 
[2026-01-14 06:57:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 06:57:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 06:57:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 06:57:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 06:57:56] 
[2026-01-14 06:57:56] 2026-01-14 05:57:25,349 | INFO     | ***************************************
[2026-01-14 06:57:56] 2026-01-14 05:57:25,852 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 06:57:56] 2026-01-14 05:57:25,866 | INFO     | sufficient remaining disk space (381418471424 B)
[2026-01-14 06:57:56] 2026-01-14 05:57:25,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 06:57:56] 2026-01-14 05:57:25,866 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 06:57:56] 2026-01-14 05:57:25,866 | INFO     | update_server=False
[2026-01-14 06:57:56] 2026-01-14 05:57:25,866 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 06:57:56] 2026-01-14 05:57:25,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 06:57:56] 2026-01-14 05:57:25,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 06:57:56] 2026-01-14 05:57:25,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 06:57:56] 2026-01-14 05:57:25,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 06:57:56] 2026-01-14 05:57:25,867 | INFO     | aborting loop
[2026-01-14 06:57:56] 2026-01-14 05:57:25,967 | INFO     | all job control threads have been joined
[2026-01-14 06:57:56] 2026-01-14 05:57:26,770 | INFO     | all data control threads have been joined
[2026-01-14 06:57:56] 2026-01-14 05:57:26,871 | INFO     | [job] queue monitor thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:26,871 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:26,871 | INFO     | [job] retrieve thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:26,872 | INFO     | [job] job monitor thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:26,908 | INFO     | all payload control threads have been joined
[2026-01-14 06:57:56] 2026-01-14 05:57:26,913 | INFO     | [payload] failed_post thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:26,973 | INFO     | [job] control thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:27,437 | INFO     | [data] copytool_in thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:27,453 | INFO     | [payload] validate_post thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:27,631 | INFO     | [job] validate thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:27,666 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:27,773 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:27,776 | INFO     | [data] control thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:27,872 | INFO     | [data] copytool_out thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:27,914 | INFO     | [payload] control thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:29,873 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:36,861 | INFO     | job.realtimelogging is not enabled
[2026-01-14 06:57:56] 2026-01-14 05:57:37,867 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 06:57:56] 2026-01-14 05:57:48,231 | INFO     | [monitor] cgroup control has ended
[2026-01-14 06:57:56] 2026-01-14 05:57:48,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714017486656)>', '<ExcThread(monitor, started 140713379485440)>']
[2026-01-14 06:57:56] 2026-01-14 05:57:53,873 | INFO     | all workflow threads have been joined
[2026-01-14 06:57:56] 2026-01-14 05:57:53,874 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 06:57:56] 2026-01-14 05:57:53,874 | INFO     | traces error code: 0
[2026-01-14 06:57:56] 2026-01-14 05:57:53,874 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 06:57:56] 2026-01-14 05:57:56,300 | INFO     | PID=3563148 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 06:57:56] 2026-01-14 05:57:56,300 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 06:57:56] 2026-01-14 05:57:56,300 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 06:57:56] 2026-01-14 05:57:56,300 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 06:57:56] 2026-01-14 05:57:56,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 06:57:56] 2026-01-14 05:57:56,300 | INFO     | [monitor] control thread has ended
[2026-01-14 06:57:56] 2026-01-14 05:57:56,349 [wrapper] ==== pilot stdout END ====
[2026-01-14 06:57:56] 2026-01-14 05:57:56,352 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 06:57:56] 2026-01-14 05:57:56,355 [wrapper] pilotpid: 3563148
[2026-01-14 06:57:56] 2026-01-14 05:57:56,357 [wrapper] Pilot exit status: 0
[2026-01-14 06:57:56] 2026-01-14 05:57:56,365 [wrapper] pandaids: 6969266445
[2026-01-14 06:57:56] 2026-01-14 05:57:56,383 [wrapper] cleanup supervisor_pilot 3578774 3563149
[2026-01-14 06:57:56] 2026-01-14 05:57:56,385 [wrapper] Test setup, not cleaning
[2026-01-14 06:57:56] 2026-01-14 05:57:56,388 [wrapper] apfmon messages muted
[2026-01-14 06:57:56] 2026-01-14 05:57:56,390 [wrapper] ==== wrapper stdout END ====
[2026-01-14 06:57:56] 2026-01-14 05:57:56,393 [wrapper] ==== wrapper stderr END ====
[2026-01-14 06:57:56]  *** Error codes and diagnostics ***
[2026-01-14 06:57:56]     "exeErrorCode": 0,
[2026-01-14 06:57:56]     "exeErrorDiag": "",
[2026-01-14 06:57:56]     "pilotErrorCode": 0,
[2026-01-14 06:57:56]     "pilotErrorDiag": "",
[2026-01-14 06:57:56]  *** Listing of results directory ***
[2026-01-14 06:57:56] total 730452
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:50 pilot3.tar.gz
[2026-01-14 06:57:56] -rwx------ 1 boinc boinc     36322 Jan 13 22:58 runpilot2-wrapper.sh
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:07 queuedata.json
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc       100 Jan 14 06:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 06:57:56] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 06:04 run_atlas
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc       105 Jan 14 06:04 job.xml
[2026-01-14 06:57:56] -rw-r--r-- 2 boinc boinc 595879016 Jan 14 06:04 EVNT.32794306._000207.pool.root.1
[2026-01-14 06:57:56] -rw-r--r-- 2 boinc boinc    592392 Jan 14 06:04 input.tar.gz
[2026-01-14 06:57:56] -rw-r--r-- 2 boinc boinc     15847 Jan 14 06:04 start_atlas.sh
[2026-01-14 06:57:56] drwxrwx--x 2 boinc boinc      4096 Jan 14 06:04 shared
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc         0 Jan 14 06:04 boinc_setup_complete
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc      6448 Jan 14 06:04 init_data.xml
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc         0 Jan 14 06:04 boinc_lockfile
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc      2502 Jan 14 06:04 pandaJob.out
[2026-01-14 06:57:56] -rw------- 1 boinc boinc    997226 Jan 14 06:04 agis_schedconf.cvmfs.json
[2026-01-14 06:57:56] -rw------- 1 boinc boinc   1516246 Jan 14 06:04 agis_ddmendpoints.agis.ALL.json
[2026-01-14 06:57:56] drwx------ 5 boinc boinc      4096 Jan 14 06:04 pilot3
[2026-01-14 06:57:56] -rw------- 1 boinc boinc        95 Jan 14 06:57 pilot_heartbeat.json
[2026-01-14 06:57:56] -rw------- 1 boinc boinc 146800916 Jan 14 06:57 HITS.48215263._005151.pool.root.1
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc       529 Jan 14 06:57 boinc_task_state.xml
[2026-01-14 06:57:56] -rw------- 1 boinc boinc      1027 Jan 14 06:57 memory_monitor_summary.json
[2026-01-14 06:57:56] -rw------- 1 boinc boinc    212873 Jan 14 06:57 log.48215263._005151.job.log.tgz.1
[2026-01-14 06:57:56] -rw------- 1 boinc boinc      7746 Jan 14 06:57 heartbeat.json
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc      8192 Jan 14 06:57 boinc_mmap_file
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc        26 Jan 14 06:57 wrapper_checkpoint.txt
[2026-01-14 06:57:56] -rw------- 1 boinc boinc       747 Jan 14 06:57 pilotlog.txt
[2026-01-14 06:57:56] -rw------- 1 boinc boinc    483346 Jan 14 06:57 log.48215263._005151.job.log.1
[2026-01-14 06:57:56] -rw------- 1 boinc boinc       357 Jan 14 06:57 output.list
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc       620 Jan 14 06:57 runtime_log
[2026-01-14 06:57:56] -rw------- 1 boinc boinc    716800 Jan 14 06:57 result.tar.gz
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc      8912 Jan 14 06:57 runtime_log.err
[2026-01-14 06:57:56] -rw------- 1 boinc boinc       659 Jan 14 06:57 hyVMDmda1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpdiKDmozNufn.diag
[2026-01-14 06:57:56] -rw-r--r-- 1 boinc boinc     10607 Jan 14 06:57 stderr.txt
[2026-01-14 06:57:56] HITS file was successfully produced:
[2026-01-14 06:57:56] -rw------- 1 boinc boinc 146800916 Jan 14 06:57 shared/HITS.pool.root.1
[2026-01-14 06:57:56]  *** Contents of shared directory: ***
[2026-01-14 06:57:56] total 726584
[2026-01-14 06:57:56] -rw-r--r-- 2 boinc boinc 595879016 Jan 14 06:04 ATLAS.root_0
[2026-01-14 06:57:56] -rw-r--r-- 2 boinc boinc    592392 Jan 14 06:04 input.tar.gz
[2026-01-14 06:57:56] -rw-r--r-- 2 boinc boinc     15847 Jan 14 06:04 start_atlas.sh
[2026-01-14 06:57:56] -rw------- 1 boinc boinc 146800916 Jan 14 06:57 HITS.pool.root.1
[2026-01-14 06:57:56] -rw------- 1 boinc boinc    716800 Jan 14 06:57 result.tar.gz
06:58:19 (3559420): run_atlas exited; CPU time 8809.343283
06:58:19 (3559420): called boinc_finish(0)

</stderr_txt>
]]>

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