Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:18:53 (3282290): wrapper (7.7.26015): starting
06:18:53 (3282290): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 06:18:53] Arguments: --nthreads 3
[2026-01-14 06:18:53] Threads: 3
[2026-01-14 06:18:53] Checking for CVMFS
[2026-01-14 06:18:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 06:18:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 06:18:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 06:18:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 06:18:53] 2.9.2.0 3128188 398 65168 155120 3 57 20920895 36864000 0 130560 0 421777 99.989 20570 16070 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 06:18:53] CVMFS is ok
[2026-01-14 06:18:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 06:18:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 06:18:53] Further information can be found at the LHC@home message board.
[2026-01-14 06:18:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 06:18:53] Checking for apptainer binary...
[2026-01-14 06:18:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 06:18:53] Running /usr/bin/apptainer --version
[2026-01-14 06:18:53] apptainer version 1.4.1-1.1
[2026-01-14 06:18:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 06:18:53] thA327
[2026-01-14 06:18:53] apptainer works
[2026-01-14 06:18:53] Set ATHENA_PROC_NUMBER=3
[2026-01-14 06:18:53] Set ATHENA_CORE_NUMBER=3
[2026-01-14 06:18:53] Starting ATLAS job with PandaID=6969266270
[2026-01-14 06:18:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 07:17:07]  *** The last 200 lines of the pilot log: ***
[2026-01-14 07:17:07] 2026-01-14 06:16:11,597 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 07:17:07] 2026-01-14 06:16:11,597 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 07:17:07] 2026-01-14 06:16:11,597 | INFO     | will abort loop
[2026-01-14 07:17:07] 2026-01-14 06:16:11,895 | INFO     | all data control threads have been joined
[2026-01-14 07:17:07] 2026-01-14 06:16:12,376 | INFO     | [job] queue monitor thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:12,377 | INFO     | [job] retrieve thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:12,380 | INFO     | [payload] validate_post thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:12,396 | INFO     | all job control threads have been joined
[2026-01-14 07:17:07] 2026-01-14 06:16:12,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 07:17:07] 2026-01-14 06:16:12,602 | INFO     | [job] job monitor thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:12,823 | INFO     | [data] copytool_in thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:12,861 | INFO     | all payload control threads have been joined
[2026-01-14 07:17:07] 2026-01-14 06:16:12,901 | INFO     | [data] control thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:13,192 | INFO     | [payload] failed_post thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:13,259 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:13,346 | INFO     | [job] validate thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:13,402 | INFO     | [job] control thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:13,427 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:13,494 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:13,579 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 07:17:07] 2026-01-14 06:16:13,866 | INFO     | [payload] control thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:14,560 | INFO     | [data] copytool_out thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:17,586 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:21,522 | INFO     | job.realtimelogging is not enabled
[2026-01-14 07:17:07] 2026-01-14 06:16:22,528 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 07:17:07] 2026-01-14 06:16:41,150 | INFO     | PID=3286018 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 07:17:07] 2026-01-14 06:16:41,151 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 07:17:07] 2026-01-14 06:16:41,151 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 07:17:07] 2026-01-14 06:16:41,151 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 07:17:07] 2026-01-14 06:17:02,601 | INFO     | [monitor] cgroup control has ended
[2026-01-14 07:17:07] 2026-01-14 06:17:02,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102188296000)>', '<ExcThread(monitor, started 140101547972352)>']
[2026-01-14 07:17:07] 2026-01-14 06:17:03,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 07:17:07] 2026-01-14 06:17:03,268 | INFO     | [monitor] control thread has ended
[2026-01-14 07:17:07] 2026-01-14 06:17:07,667 | INFO     | all workflow threads have been joined
[2026-01-14 07:17:07] 2026-01-14 06:17:07,667 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 07:17:07] 2026-01-14 06:17:07,668 | INFO     | traces error code: 0
[2026-01-14 07:17:07] 2026-01-14 06:17:07,668 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 07:17:07] 2026-01-14 06:17:07,717 [wrapper] ==== pilot stdout END ====
[2026-01-14 07:17:07] 2026-01-14 06:17:07,720 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 07:17:07] 2026-01-14 06:17:07,722 [wrapper] pilotpid: 3286018
[2026-01-14 07:17:07] 2026-01-14 06:17:07,724 [wrapper] Pilot exit status: 0
[2026-01-14 07:17:07] 2026-01-14 06:17:07,732 [wrapper] pandaids: 6969266270
[2026-01-14 07:17:07] 2026-01-14 06:17:07,748 [wrapper] cleanup supervisor_pilot 3301642 3286019
[2026-01-14 07:17:07] 2026-01-14 06:17:07,751 [wrapper] Test setup, not cleaning
[2026-01-14 07:17:07] 2026-01-14 06:17:07,753 [wrapper] apfmon messages muted
[2026-01-14 07:17:07] 2026-01-14 06:17:07,755 [wrapper] ==== wrapper stdout END ====
[2026-01-14 07:17:07] 2026-01-14 06:17:07,757 [wrapper] ==== wrapper stderr END ====
[2026-01-14 07:17:07]  *** Error codes and diagnostics ***
[2026-01-14 07:17:07]     "exeErrorCode": 0,
[2026-01-14 07:17:07]     "exeErrorDiag": "",
[2026-01-14 07:17:07]     "pilotErrorCode": 0,
[2026-01-14 07:17:07]     "pilotErrorDiag": "",
[2026-01-14 07:17:07]  *** Listing of results directory ***
[2026-01-14 07:17:07] total 742272
[2026-01-14 07:17:07] -rwx------ 1 boinc boinc     36322 Jan 13 22:58 runpilot2-wrapper.sh
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:05 pilot3.tar.gz
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:12 queuedata.json
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc       100 Jan 14 06:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 07:17:07] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 06:18 run_atlas
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc       105 Jan 14 06:18 job.xml
[2026-01-14 07:17:07] -rw-r--r-- 2 boinc boinc 598648697 Jan 14 06:18 EVNT.32794306._000200.pool.root.1
[2026-01-14 07:17:07] -rw-r--r-- 2 boinc boinc    592393 Jan 14 06:18 input.tar.gz
[2026-01-14 07:17:07] -rw-r--r-- 2 boinc boinc     15847 Jan 14 06:18 start_atlas.sh
[2026-01-14 07:17:07] drwxrwx--x 2 boinc boinc      4096 Jan 14 06:18 shared
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc         0 Jan 14 06:18 boinc_setup_complete
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc      6446 Jan 14 06:18 init_data.xml
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc         0 Jan 14 06:18 boinc_lockfile
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc      2502 Jan 14 06:18 pandaJob.out
[2026-01-14 07:17:07] -rw------- 1 boinc boinc    997226 Jan 14 06:18 agis_schedconf.cvmfs.json
[2026-01-14 07:17:07] -rw------- 1 boinc boinc   1516246 Jan 14 06:18 agis_ddmendpoints.agis.ALL.json
[2026-01-14 07:17:07] drwx------ 5 boinc boinc      4096 Jan 14 06:18 pilot3
[2026-01-14 07:17:07] -rw------- 1 boinc boinc 156057692 Jan 14 07:15 HITS.48215263._004976.pool.root.1
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc       529 Jan 14 07:15 boinc_task_state.xml
[2026-01-14 07:17:07] -rw------- 1 boinc boinc      1018 Jan 14 07:15 memory_monitor_summary.json
[2026-01-14 07:17:07] -rw------- 1 boinc boinc    215857 Jan 14 07:16 log.48215263._004976.job.log.tgz.1
[2026-01-14 07:17:07] -rw------- 1 boinc boinc      7741 Jan 14 07:16 heartbeat.json
[2026-01-14 07:17:07] -rw------- 1 boinc boinc        95 Jan 14 07:16 pilot_heartbeat.json
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc      8192 Jan 14 07:17 boinc_mmap_file
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc        26 Jan 14 07:17 wrapper_checkpoint.txt
[2026-01-14 07:17:07] -rw------- 1 boinc boinc      5010 Jan 14 07:17 pilotlog.txt
[2026-01-14 07:17:07] -rw------- 1 boinc boinc    519631 Jan 14 07:17 log.48215263._004976.job.log.1
[2026-01-14 07:17:07] -rw------- 1 boinc boinc       357 Jan 14 07:17 output.list
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc       620 Jan 14 07:17 runtime_log
[2026-01-14 07:17:07] -rw------- 1 boinc boinc    757760 Jan 14 07:17 result.tar.gz
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc      8897 Jan 14 07:17 runtime_log.err
[2026-01-14 07:17:07] -rw------- 1 boinc boinc       656 Jan 14 07:17 avAMDmaa1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgooKDmqXiChn.diag
[2026-01-14 07:17:07] -rw-r--r-- 1 boinc boinc      7266 Jan 14 07:17 stderr.txt
[2026-01-14 07:17:07] HITS file was successfully produced:
[2026-01-14 07:17:07] -rw------- 1 boinc boinc 156057692 Jan 14 07:15 shared/HITS.pool.root.1
[2026-01-14 07:17:07]  *** Contents of shared directory: ***
[2026-01-14 07:17:07] total 738368
[2026-01-14 07:17:07] -rw-r--r-- 2 boinc boinc 598648697 Jan 14 06:18 ATLAS.root_0
[2026-01-14 07:17:07] -rw-r--r-- 2 boinc boinc    592393 Jan 14 06:18 input.tar.gz
[2026-01-14 07:17:07] -rw-r--r-- 2 boinc boinc     15847 Jan 14 06:18 start_atlas.sh
[2026-01-14 07:17:07] -rw------- 1 boinc boinc 156057692 Jan 14 07:15 HITS.pool.root.1
[2026-01-14 07:17:07] -rw------- 1 boinc boinc    757760 Jan 14 07:17 result.tar.gz
07:17:08 (3282290): run_atlas exited; CPU time 9605.169179
07:17:08 (3282290): called boinc_finish(0)

</stderr_txt>
]]>

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