Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:06:11 (612857): wrapper (7.7.26015): starting
07:06:11 (612857): wrapper: running run_atlas (--nthreads 4)
[2026-01-14 07:06:11] Arguments: --nthreads 4
[2026-01-14 07:06:11] Threads: 4
[2026-01-14 07:06:11] Checking for CVMFS
[2026-01-14 07:06:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 07:06:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 07:06:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 07:06:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 07:06:11] 2.9.2.0 426885 441 74624 155120 3 57 18744459 36864001 0 130560 0 492426 99.991 19240 19713 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 07:06:11] CVMFS is ok
[2026-01-14 07:06:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 07:06:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 07:06:11] Further information can be found at the LHC@home message board.
[2026-01-14 07:06:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 07:06:11] Checking for apptainer binary...
[2026-01-14 07:06:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 07:06:11] Running /usr/bin/apptainer --version
[2026-01-14 07:06:11] apptainer version 1.4.1-1.1
[2026-01-14 07:06:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 07:06:11] iaxoA393
[2026-01-14 07:06:11] apptainer works
[2026-01-14 07:06:11] Set ATHENA_PROC_NUMBER=4
[2026-01-14 07:06:11] Set ATHENA_CORE_NUMBER=4
[2026-01-14 07:06:11] Starting ATLAS job with PandaID=6969260216
[2026-01-14 07:06:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 07:53:28]  *** The last 200 lines of the pilot log: ***
[2026-01-14 07:53:28] 2026-01-14 06:52:49,928 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,928 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,928 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,928 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,928 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,928 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,929 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,929 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,929 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 07:53:28] 2026-01-14 06:52:49,929 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,929 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 07:53:28] 2026-01-14 06:52:49,929 | INFO     | job 6969260216 has completed (purged errors)
[2026-01-14 07:53:28] 2026-01-14 06:52:49,929 | INFO     | overall cleanup function is called
[2026-01-14 07:53:28] 2026-01-14 06:52:50,935 | INFO     | --- collectZombieJob: --- 10, [623207]
[2026-01-14 07:53:28] 2026-01-14 06:52:50,935 | INFO     | zombie collector waiting for pid 623207
[2026-01-14 07:53:28] 2026-01-14 06:52:50,936 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 07:53:28] 2026-01-14 06:52:50,936 | INFO     | collected zombie processes
[2026-01-14 07:53:28] 2026-01-14 06:52:50,936 | INFO     | will attempt to kill all subprocesses of pid=623207
[2026-01-14 07:53:28] 2026-01-14 06:52:50,979 | INFO     | process IDs to be killed: [623207] (in reverse order)
[2026-01-14 07:53:28] 2026-01-14 06:52:51,009 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 07:53:28] 2026-01-14 06:52:51,009 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 07:53:28] 2026-01-14 06:52:51,011 | INFO     | did not find any defunct processes belonging to 623207
[2026-01-14 07:53:28] 2026-01-14 06:52:51,012 | INFO     | did not find any defunct processes belonging to 623207
[2026-01-14 07:53:28] 2026-01-14 06:52:51,012 | INFO     | ready for new job
[2026-01-14 07:53:28] 2026-01-14 06:52:51,012 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 07:53:28] 2026-01-14 06:52:51,013 | INFO     | ***************************************
[2026-01-14 07:53:28] 2026-01-14 06:52:51,013 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 07:53:28] 2026-01-14 06:52:51,013 | INFO     | ***************************************
[2026-01-14 07:53:28] 2026-01-14 06:52:51,013 | INFO     | 
[2026-01-14 07:53:28] 2026-01-14 06:52:51,013 | INFO     | architecture information:
[2026-01-14 07:53:28] 2026-01-14 06:52:51,013 | INFO     | executing command: cat /etc/os-release
[2026-01-14 07:53:28] 2026-01-14 06:52:51,026 | INFO     | cat /etc/os-release:
[2026-01-14 07:53:28] NAME="CentOS Linux"
[2026-01-14 07:53:28] VERSION="7 (Core)"
[2026-01-14 07:53:28] ID="centos"
[2026-01-14 07:53:28] ID_LIKE="rhel fedora"
[2026-01-14 07:53:28] VERSION_ID="7"
[2026-01-14 07:53:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 07:53:28] ANSI_COLOR="0;31"
[2026-01-14 07:53:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 07:53:28] HOME_URL="https://www.centos.org/"
[2026-01-14 07:53:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 07:53:28] 
[2026-01-14 07:53:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 07:53:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 07:53:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 07:53:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 07:53:28] 
[2026-01-14 07:53:28] 2026-01-14 06:52:51,026 | INFO     | ***************************************
[2026-01-14 07:53:28] 2026-01-14 06:52:51,529 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 07:53:28] 2026-01-14 06:52:51,545 | INFO     | sufficient remaining disk space (340380352512 B)
[2026-01-14 07:53:28] 2026-01-14 06:52:51,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 07:53:28] 2026-01-14 06:52:51,546 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 07:53:28] 2026-01-14 06:52:51,546 | INFO     | update_server=False
[2026-01-14 07:53:28] 2026-01-14 06:52:51,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 07:53:28] 2026-01-14 06:52:51,546 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 07:53:28] 2026-01-14 06:52:51,546 | INFO     | aborting loop
[2026-01-14 07:53:28] 2026-01-14 06:52:51,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 07:53:28] 2026-01-14 06:52:51,643 | INFO     | all data control threads have been joined
[2026-01-14 07:53:28] 2026-01-14 06:52:51,904 | INFO     | all job control threads have been joined
[2026-01-14 07:53:28] 2026-01-14 06:52:51,920 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 07:53:28] 2026-01-14 06:52:52,551 | INFO     | [job] retrieve thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:52,552 | INFO     | [job] job monitor thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:52,552 | INFO     | [job] queue monitor thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:52,552 | INFO     | [job] validate thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:52,618 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:52,649 | INFO     | [data] control thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:52,699 | INFO     | [payload] failed_post thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:52,881 | INFO     | all payload control threads have been joined
[2026-01-14 07:53:28] 2026-01-14 06:52:52,910 | INFO     | [job] control thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:53,007 | INFO     | [data] copytool_in thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:53,287 | INFO     | [payload] validate_post thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:53,464 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:53,886 | INFO     | [payload] control thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:53,926 | INFO     | [data] copytool_out thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:54,017 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:52:54,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 07:53:28] 2026-01-14 06:52:58,883 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:53:01,648 | INFO     | job.realtimelogging is not enabled
[2026-01-14 07:53:28] 2026-01-14 06:53:02,654 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 07:53:28] 2026-01-14 06:53:21,407 | INFO     | PID=616634 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 07:53:28] 2026-01-14 06:53:21,407 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 07:53:28] 2026-01-14 06:53:21,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 07:53:28] 2026-01-14 06:53:21,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 07:53:28] 2026-01-14 06:53:22,133 | INFO     | [monitor] cgroup control has ended
[2026-01-14 07:53:28] 2026-01-14 06:53:23,139 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648170575680)>', '<ExcThread(monitor, started 140647050749696)>']
[2026-01-14 07:53:28] 2026-01-14 06:53:23,418 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 07:53:28] 2026-01-14 06:53:23,418 | INFO     | [monitor] control thread has ended
[2026-01-14 07:53:28] 2026-01-14 06:53:28,164 | INFO     | all workflow threads have been joined
[2026-01-14 07:53:28] 2026-01-14 06:53:28,165 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 07:53:28] 2026-01-14 06:53:28,165 | INFO     | traces error code: 0
[2026-01-14 07:53:28] 2026-01-14 06:53:28,165 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 07:53:28] 2026-01-14 06:53:28,235 [wrapper] ==== pilot stdout END ====
[2026-01-14 07:53:28] 2026-01-14 06:53:28,239 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 07:53:28] 2026-01-14 06:53:28,243 [wrapper] pilotpid: 616634
[2026-01-14 07:53:28] 2026-01-14 06:53:28,247 [wrapper] Pilot exit status: 0
[2026-01-14 07:53:28] 2026-01-14 06:53:28,257 [wrapper] pandaids: 6969260216
[2026-01-14 07:53:28] 2026-01-14 06:53:28,278 [wrapper] cleanup supervisor_pilot  632550 616635
[2026-01-14 07:53:28] 2026-01-14 06:53:28,282 [wrapper] Test setup, not cleaning
[2026-01-14 07:53:28] 2026-01-14 06:53:28,285 [wrapper] apfmon messages muted
[2026-01-14 07:53:28] 2026-01-14 06:53:28,289 [wrapper] ==== wrapper stdout END ====
[2026-01-14 07:53:28] 2026-01-14 06:53:28,292 [wrapper] ==== wrapper stderr END ====
[2026-01-14 07:53:28]  *** Error codes and diagnostics ***
[2026-01-14 07:53:28]     "exeErrorCode": 0,
[2026-01-14 07:53:28]     "exeErrorDiag": "",
[2026-01-14 07:53:28]     "pilotErrorCode": 0,
[2026-01-14 07:53:28]     "pilotErrorDiag": "",
[2026-01-14 07:53:28]  *** Listing of results directory ***
[2026-01-14 07:53:28] total 732828
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:50 pilot3.tar.gz
[2026-01-14 07:53:28] -rwx------ 1 boinc boinc     36322 Jan 13 22:58 runpilot2-wrapper.sh
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:07 queuedata.json
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc       100 Jan 14 07:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 07:53:28] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 07:06 run_atlas
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc       105 Jan 14 07:06 job.xml
[2026-01-14 07:53:28] -rw-r--r-- 2 boinc boinc 594519898 Jan 14 07:06 EVNT.32794306._000093.pool.root.1
[2026-01-14 07:53:28] -rw-r--r-- 2 boinc boinc    592394 Jan 14 07:06 input.tar.gz
[2026-01-14 07:53:28] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:06 start_atlas.sh
[2026-01-14 07:53:28] drwxrwx--x 2 boinc boinc      4096 Jan 14 07:06 shared
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:06 boinc_setup_complete
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc      6371 Jan 14 07:06 init_data.xml
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:06 boinc_lockfile
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc      2504 Jan 14 07:06 pandaJob.out
[2026-01-14 07:53:28] -rw------- 1 boinc boinc    997226 Jan 14 07:06 agis_schedconf.cvmfs.json
[2026-01-14 07:53:28] -rw------- 1 boinc boinc   1516246 Jan 14 07:06 agis_ddmendpoints.agis.ALL.json
[2026-01-14 07:53:28] drwx------ 5 boinc boinc      4096 Jan 14 07:06 pilot3
[2026-01-14 07:53:28] -rw------- 1 boinc boinc 150645427 Jan 14 07:52 HITS.48215263._002315.pool.root.1
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc       530 Jan 14 07:52 boinc_task_state.xml
[2026-01-14 07:53:28] -rw------- 1 boinc boinc        95 Jan 14 07:52 pilot_heartbeat.json
[2026-01-14 07:53:28] -rw------- 1 boinc boinc      1019 Jan 14 07:52 memory_monitor_summary.json
[2026-01-14 07:53:28] -rw------- 1 boinc boinc    238936 Jan 14 07:52 log.48215263._002315.job.log.tgz.1
[2026-01-14 07:53:28] -rw------- 1 boinc boinc      7754 Jan 14 07:52 heartbeat.json
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc        27 Jan 14 07:53 wrapper_checkpoint.txt
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc      8192 Jan 14 07:53 boinc_mmap_file
[2026-01-14 07:53:28] -rw------- 1 boinc boinc      4823 Jan 14 07:53 pilotlog.txt
[2026-01-14 07:53:28] -rw------- 1 boinc boinc    433126 Jan 14 07:53 log.48215263._002315.job.log.1
[2026-01-14 07:53:28] -rw------- 1 boinc boinc       357 Jan 14 07:53 output.list
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc       620 Jan 14 07:53 runtime_log
[2026-01-14 07:53:28] -rw------- 1 boinc boinc    686080 Jan 14 07:53 result.tar.gz
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc      8907 Jan 14 07:53 runtime_log.err
[2026-01-14 07:53:28] -rw------- 1 boinc boinc       659 Jan 14 07:53 SvwNDmSa1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbciKDmNkyHOn.diag
[2026-01-14 07:53:28] -rw-r--r-- 1 boinc boinc     12017 Jan 14 07:53 stderr.txt
[2026-01-14 07:53:28] HITS file was successfully produced:
[2026-01-14 07:53:28] -rw------- 1 boinc boinc 150645427 Jan 14 07:52 shared/HITS.pool.root.1
[2026-01-14 07:53:28]  *** Contents of shared directory: ***
[2026-01-14 07:53:28] total 728980
[2026-01-14 07:53:28] -rw-r--r-- 2 boinc boinc 594519898 Jan 14 07:06 ATLAS.root_0
[2026-01-14 07:53:28] -rw-r--r-- 2 boinc boinc    592394 Jan 14 07:06 input.tar.gz
[2026-01-14 07:53:28] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:06 start_atlas.sh
[2026-01-14 07:53:28] -rw------- 1 boinc boinc 150645427 Jan 14 07:52 HITS.pool.root.1
[2026-01-14 07:53:28] -rw------- 1 boinc boinc    686080 Jan 14 07:53 result.tar.gz
07:53:30 (612857): run_atlas exited; CPU time 10237.803627
07:53:30 (612857): called boinc_finish(0)

</stderr_txt>
]]>

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