Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:53:33 (635130): wrapper (7.7.26015): starting
07:53:33 (635130): wrapper: running run_atlas (--nthreads 4)
[2026-01-14 07:53:33] Arguments: --nthreads 4
[2026-01-14 07:53:33] Threads: 4
[2026-01-14 07:53:33] Checking for CVMFS
[2026-01-14 07:53:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 07:53:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 07:53:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 07:53:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 07:53:33] 2.9.2.0 426885 488 76932 155121 0 57 18752288 36864001 0 130560 0 552567 99.992 20583 20318 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 07:53:33] CVMFS is ok
[2026-01-14 07:53:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 07:53:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 07:53:33] Further information can be found at the LHC@home message board.
[2026-01-14 07:53:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 07:53:33] Checking for apptainer binary...
[2026-01-14 07:53:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 07:53:33] Running /usr/bin/apptainer --version
[2026-01-14 07:53:33] apptainer version 1.4.1-1.1
[2026-01-14 07:53:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 07:53:33] iaxoA393
[2026-01-14 07:53:33] apptainer works
[2026-01-14 07:53:33] Set ATHENA_PROC_NUMBER=4
[2026-01-14 07:53:33] Set ATHENA_CORE_NUMBER=4
[2026-01-14 07:53:33] Starting ATLAS job with PandaID=6969265684
[2026-01-14 07:53:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 08:41:50]  *** The last 200 lines of the pilot log: ***
[2026-01-14 08:41:50] 2026-01-14 07:41:16,859 | INFO     | --- collectZombieJob: --- 10, [645486]
[2026-01-14 08:41:50] 2026-01-14 07:41:16,859 | INFO     | zombie collector waiting for pid 645486
[2026-01-14 08:41:50] 2026-01-14 07:41:16,859 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 08:41:50] 2026-01-14 07:41:16,859 | INFO     | collected zombie processes
[2026-01-14 08:41:50] 2026-01-14 07:41:16,859 | INFO     | will attempt to kill all subprocesses of pid=645486
[2026-01-14 08:41:50] 2026-01-14 07:41:16,904 | INFO     | process IDs to be killed: [645486] (in reverse order)
[2026-01-14 08:41:50] 2026-01-14 07:41:16,934 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 08:41:50] 2026-01-14 07:41:16,934 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 08:41:50] 2026-01-14 07:41:16,935 | INFO     | did not find any defunct processes belonging to 645486
[2026-01-14 08:41:50] 2026-01-14 07:41:16,937 | INFO     | did not find any defunct processes belonging to 645486
[2026-01-14 08:41:50] 2026-01-14 07:41:16,937 | INFO     | ready for new job
[2026-01-14 08:41:50] 2026-01-14 07:41:16,937 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 08:41:50] 2026-01-14 07:41:16,937 | INFO     | ***************************************
[2026-01-14 08:41:50] 2026-01-14 07:41:16,938 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 08:41:50] 2026-01-14 07:41:16,938 | INFO     | ***************************************
[2026-01-14 08:41:50] 2026-01-14 07:41:16,938 | INFO     | 
[2026-01-14 08:41:50] 2026-01-14 07:41:16,938 | INFO     | architecture information:
[2026-01-14 08:41:50] 2026-01-14 07:41:16,938 | INFO     | executing command: cat /etc/os-release
[2026-01-14 08:41:50] 2026-01-14 07:41:16,950 | INFO     | cat /etc/os-release:
[2026-01-14 08:41:50] NAME="CentOS Linux"
[2026-01-14 08:41:50] VERSION="7 (Core)"
[2026-01-14 08:41:50] ID="centos"
[2026-01-14 08:41:50] ID_LIKE="rhel fedora"
[2026-01-14 08:41:50] VERSION_ID="7"
[2026-01-14 08:41:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 08:41:50] ANSI_COLOR="0;31"
[2026-01-14 08:41:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 08:41:50] HOME_URL="https://www.centos.org/"
[2026-01-14 08:41:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 08:41:50] 
[2026-01-14 08:41:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 08:41:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 08:41:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 08:41:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 08:41:50] 
[2026-01-14 08:41:50] 2026-01-14 07:41:16,950 | INFO     | ***************************************
[2026-01-14 08:41:50] 2026-01-14 07:41:17,454 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 08:41:50] 2026-01-14 07:41:17,470 | INFO     | sufficient remaining disk space (340000768000 B)
[2026-01-14 08:41:50] 2026-01-14 07:41:17,471 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 08:41:50] 2026-01-14 07:41:17,471 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 08:41:50] 2026-01-14 07:41:17,471 | INFO     | update_server=False
[2026-01-14 08:41:50] 2026-01-14 07:41:17,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 08:41:50] 2026-01-14 07:41:17,471 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 08:41:50] 2026-01-14 07:41:17,585 | INFO     | all data control threads have been joined
[2026-01-14 08:41:50] 2026-01-14 07:41:17,921 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-14 08:41:50] 2026-01-14 07:41:17,921 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 08:41:50] 2026-01-14 07:41:17,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 08:41:50] 2026-01-14 07:41:17,922 | INFO     | will abort loop
[2026-01-14 08:41:50] 2026-01-14 07:41:18,003 | INFO     | all payload control threads have been joined
[2026-01-14 08:41:50] 2026-01-14 07:41:18,472 | INFO     | [job] queue monitor thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:18,476 | INFO     | [job] retrieve thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:18,591 | INFO     | [data] control thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:18,744 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:18,748 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:18,772 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 08:41:50] 2026-01-14 07:41:18,793 | INFO     | all job control threads have been joined
[2026-01-14 08:41:50] 2026-01-14 07:41:18,825 | INFO     | [job] validate thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:18,927 | INFO     | [job] job monitor thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:19,009 | INFO     | [payload] control thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:19,203 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:19,474 | INFO     | [data] copytool_in thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:19,494 | INFO     | [payload] validate_post thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:19,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 08:41:50] 2026-01-14 07:41:19,799 | INFO     | [job] control thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:20,053 | INFO     | [payload] failed_post thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:20,778 | INFO     | [data] copytool_out thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:23,726 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:28,207 | INFO     | job.realtimelogging is not enabled
[2026-01-14 08:41:50] 2026-01-14 07:41:29,212 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 08:41:50] 2026-01-14 07:41:44,423 | INFO     | [monitor] cgroup control has ended
[2026-01-14 08:41:50] 2026-01-14 07:41:45,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139870649857856)>', '<ExcThread(monitor, started 139869997213440)>']
[2026-01-14 08:41:50] 2026-01-14 07:41:47,569 | INFO     | PID=638916 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 08:41:50] 2026-01-14 07:41:47,569 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 08:41:50] 2026-01-14 07:41:47,569 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 08:41:50] 2026-01-14 07:41:47,569 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 08:41:50] 2026-01-14 07:41:47,569 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 08:41:50] 2026-01-14 07:41:47,569 | INFO     | [monitor] control thread has ended
[2026-01-14 08:41:50] 2026-01-14 07:41:50,359 | INFO     | all workflow threads have been joined
[2026-01-14 08:41:50] 2026-01-14 07:41:50,359 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 08:41:50] 2026-01-14 07:41:50,359 | INFO     | traces error code: 0
[2026-01-14 08:41:50] 2026-01-14 07:41:50,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 08:41:50] 2026-01-14 07:41:50,426 [wrapper] ==== pilot stdout END ====
[2026-01-14 08:41:50] 2026-01-14 07:41:50,430 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 08:41:50] 2026-01-14 07:41:50,434 [wrapper] pilotpid: 638916
[2026-01-14 08:41:50] 2026-01-14 07:41:50,437 [wrapper] Pilot exit status: 0
[2026-01-14 08:41:50] 2026-01-14 07:41:50,448 [wrapper] pandaids: 6969265684
[2026-01-14 08:41:50] 2026-01-14 07:41:50,468 [wrapper] cleanup supervisor_pilot  654872 638917
[2026-01-14 08:41:50] 2026-01-14 07:41:50,472 [wrapper] Test setup, not cleaning
[2026-01-14 08:41:50] 2026-01-14 07:41:50,476 [wrapper] apfmon messages muted
[2026-01-14 08:41:50] 2026-01-14 07:41:50,480 [wrapper] ==== wrapper stdout END ====
[2026-01-14 08:41:50] 2026-01-14 07:41:50,483 [wrapper] ==== wrapper stderr END ====
[2026-01-14 08:41:50]  *** Error codes and diagnostics ***
[2026-01-14 08:41:50]     "exeErrorCode": 0,
[2026-01-14 08:41:50]     "exeErrorDiag": "",
[2026-01-14 08:41:50]     "pilotErrorCode": 0,
[2026-01-14 08:41:50]     "pilotErrorDiag": "",
[2026-01-14 08:41:50]  *** Listing of results directory ***
[2026-01-14 08:41:50] total 729736
[2026-01-14 08:41:50] -rwx------ 1 boinc boinc     36322 Jan 13 22:58 runpilot2-wrapper.sh
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:05 pilot3.tar.gz
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:12 queuedata.json
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc       100 Jan 14 07:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 08:41:50] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 07:53 run_atlas
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc       105 Jan 14 07:53 job.xml
[2026-01-14 08:41:50] -rw-r--r-- 2 boinc boinc 592419123 Jan 14 07:53 EVNT.32794306._000189.pool.root.1
[2026-01-14 08:41:50] drwxrwx--x 2 boinc boinc      4096 Jan 14 07:53 shared
[2026-01-14 08:41:50] -rw-r--r-- 2 boinc boinc    592390 Jan 14 07:53 input.tar.gz
[2026-01-14 08:41:50] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:53 start_atlas.sh
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:53 boinc_setup_complete
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc      6371 Jan 14 07:53 init_data.xml
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc         0 Jan 14 07:53 boinc_lockfile
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc      2505 Jan 14 07:53 pandaJob.out
[2026-01-14 08:41:50] -rw------- 1 boinc boinc    997218 Jan 14 07:53 agis_schedconf.cvmfs.json
[2026-01-14 08:41:50] -rw------- 1 boinc boinc   1516246 Jan 14 07:53 agis_ddmendpoints.agis.ALL.json
[2026-01-14 08:41:50] drwx------ 5 boinc boinc      4096 Jan 14 07:53 pilot3
[2026-01-14 08:41:50] -rw------- 1 boinc boinc 149573148 Jan 14 08:40 HITS.48215263._004708.pool.root.1
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc       530 Jan 14 08:40 boinc_task_state.xml
[2026-01-14 08:41:50] -rw------- 1 boinc boinc        95 Jan 14 08:40 pilot_heartbeat.json
[2026-01-14 08:41:50] -rw------- 1 boinc boinc      1023 Jan 14 08:41 memory_monitor_summary.json
[2026-01-14 08:41:50] -rw------- 1 boinc boinc    231671 Jan 14 08:41 log.48215263._004708.job.log.tgz.1
[2026-01-14 08:41:50] -rw------- 1 boinc boinc      7766 Jan 14 08:41 heartbeat.json
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc      8192 Jan 14 08:41 boinc_mmap_file
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc        27 Jan 14 08:41 wrapper_checkpoint.txt
[2026-01-14 08:41:50] -rw------- 1 boinc boinc      5009 Jan 14 08:41 pilotlog.txt
[2026-01-14 08:41:50] -rw------- 1 boinc boinc    442172 Jan 14 08:41 log.48215263._004708.job.log.1
[2026-01-14 08:41:50] -rw------- 1 boinc boinc       357 Jan 14 08:41 output.list
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc       620 Jan 14 08:41 runtime_log
[2026-01-14 08:41:50] -rw------- 1 boinc boinc    696320 Jan 14 08:41 result.tar.gz
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc      8907 Jan 14 08:41 runtime_log.err
[2026-01-14 08:41:50] -rw------- 1 boinc boinc       659 Jan 14 08:41 mTVLDmPa1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiloKDmlOoXRn.diag
[2026-01-14 08:41:50] -rw-r--r-- 1 boinc boinc     10927 Jan 14 08:41 stderr.txt
[2026-01-14 08:41:50] HITS file was successfully produced:
[2026-01-14 08:41:50] -rw------- 1 boinc boinc 149573148 Jan 14 08:40 shared/HITS.pool.root.1
[2026-01-14 08:41:50]  *** Contents of shared directory: ***
[2026-01-14 08:41:50] total 725888
[2026-01-14 08:41:50] -rw-r--r-- 2 boinc boinc 592419123 Jan 14 07:53 ATLAS.root_0
[2026-01-14 08:41:50] -rw-r--r-- 2 boinc boinc    592390 Jan 14 07:53 input.tar.gz
[2026-01-14 08:41:50] -rw-r--r-- 2 boinc boinc     15847 Jan 14 07:53 start_atlas.sh
[2026-01-14 08:41:50] -rw------- 1 boinc boinc 149573148 Jan 14 08:40 HITS.pool.root.1
[2026-01-14 08:41:50] -rw------- 1 boinc boinc    696320 Jan 14 08:41 result.tar.gz
08:41:52 (635130): run_atlas exited; CPU time 10404.214799
08:41:52 (635130): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN