Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:16:31 (1175459): wrapper (7.7.26015): starting
23:16:31 (1175459): wrapper: running run_atlas (--nthreads 11)
[2026-01-13 23:16:31] Arguments: --nthreads 11
[2026-01-13 23:16:31] Threads: 11
[2026-01-13 23:16:31] Checking for CVMFS
[2026-01-13 23:16:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 23:16:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 23:16:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 23:16:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 23:16:52] 2.13.3.0 7219 29591 161872 155116 1 371 20532178 40960001 13275 16776704 0 47341563 99.740 29362494 37639 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 23:16:52] CVMFS is ok
[2026-01-13 23:16:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 23:16:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 23:16:52] Further information can be found at the LHC@home message board.
[2026-01-13 23:16:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 23:16:52] Checking for apptainer binary...
[2026-01-13 23:16:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 23:16:52] Running /usr/bin/apptainer --version
[2026-01-13 23:16:52] apptainer version 1.4.5-2.el9
[2026-01-13 23:16:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 23:16:53] c-212-13.aglt2.org
[2026-01-13 23:16:53] apptainer works
[2026-01-13 23:16:53] Set ATHENA_PROC_NUMBER=11
[2026-01-13 23:16:53] Set ATHENA_CORE_NUMBER=11
[2026-01-13 23:16:53] Starting ATLAS job with PandaID=6969275275
[2026-01-13 23:16:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 00:54:13]  *** The last 200 lines of the pilot log: ***
[2026-01-14 00:54:13] 2026-01-14 05:53:13,233 | INFO     | transferring file log.48215263._009001.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969275275/log.48215263._009001.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-14 00:54:13] 2026-01-14 05:53:13,233 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969275275/log.48215263._009001.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._009001.job
[2026-01-14 00:54:13] 2026-01-14 05:53:13,387 | INFO     | adding to output.list: log.48215263._009001.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/2c/log.48215263._009001.job.log.tg
[2026-01-14 00:54:13] 2026-01-14 05:53:13,388 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 00:54:13] 2026-01-14 05:53:13,388 | INFO     | summary of transferred files:
[2026-01-14 00:54:13] 2026-01-14 05:53:13,388 | INFO     |  -- lfn=log.48215263._009001.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 00:54:13] 2026-01-14 05:53:13,388 | INFO     | stage-out finished correctly
[2026-01-14 00:54:13] 2026-01-14 05:53:13,856 | INFO     | time since job start (5717s) is within the limit (349056.0s)
[2026-01-14 00:54:13] 2026-01-14 05:53:13,872 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 00:54:13] 2026-01-14 05:53:14,048 | INFO     | monitor loop #371: job 0:6969275275 is in state 'finished'
[2026-01-14 00:54:13] 2026-01-14 05:53:14,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 00:54:13] 2026-01-14 05:53:14,268 | INFO     | job 6969275275 has state=finished
[2026-01-14 00:54:13] 2026-01-14 05:53:14,268 | INFO     | preparing for final server update for job 6969275275 in state='finished'
[2026-01-14 00:54:13] 2026-01-14 05:53:14,269 | INFO     | this job has now completed (state=finished)
[2026-01-14 00:54:13] 2026-01-14 05:53:14,269 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 00:54:13] 2026-01-14 05:53:14,269 | INFO     | log transfer has been attempted: DONE
[2026-01-14 00:54:13] 2026-01-14 05:53:14,270 | INFO     | job 6969275275 has finished - writing final server update
[2026-01-14 00:54:13] 2026-01-14 05:53:14,270 | INFO     | total number of processed events: 400 (read)
[2026-01-14 00:54:13] 2026-01-14 05:53:14,270 | INFO     | executing command: lscpu
[2026-01-14 00:54:13] 2026-01-14 05:53:14,351 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 00:54:13] 2026-01-14 05:53:15,864 | INFO     | time since job start (5719s) is within the limit (349056.0s)
[2026-01-14 00:54:13] 2026-01-14 05:53:16,553 | INFO     | monitor loop #372: job 0:6969275275 is in state 'finished'
[2026-01-14 00:54:13] 2026-01-14 05:53:16,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 00:54:13] 2026-01-14 05:53:17,871 | INFO     | time since job start (5721s) is within the limit (349056.0s)
[2026-01-14 00:54:13] 2026-01-14 05:53:19,058 | INFO     | monitor loop #373: job 0:6969275275 is in state 'finished'
[2026-01-14 00:54:13] 2026-01-14 05:53:19,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 00:54:13] 2026-01-14 05:53:19,878 | INFO     | time since job start (5723s) is within the limit (349056.0s)
[2026-01-14 00:54:13] 2026-01-14 05:53:21,563 | INFO     | monitor loop #374: job 0:6969275275 is in state 'finished'
[2026-01-14 00:54:13] 2026-01-14 05:53:21,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 00:54:13] 2026-01-14 05:53:21,885 | INFO     | time since job start (5725s) is within the limit (349056.0s)
[2026-01-14 00:54:13] 2026-01-14 05:53:23,892 | INFO     | time since job start (5727s) is within the limit (349056.0s)
[2026-01-14 00:54:13] 2026-01-14 05:53:24,068 | INFO     | monitor loop #375: job 0:6969275275 is in state 'finished'
[2026-01-14 00:54:13] 2026-01-14 05:53:24,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 00:54:13] 2026-01-14 05:53:26,592 | INFO     | monitor loop #376: job 0:6969275275 is in state 'finished'
[2026-01-14 00:54:13] 2026-01-14 05:53:26,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 00:54:13] 2026-01-14 05:53:27,063 | INFO     | PID=1179658 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 00:54:13] 2026-01-14 05:53:27,063 | INFO     | .. there are 16 such processes running
[2026-01-14 00:54:13] 2026-01-14 05:53:27,545 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 00:54:13] 2026-01-14 05:53:27,569 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3242.218093750001
[2026-01-14 00:54:13] 2026-01-14 05:53:27,644 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969275275/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 00:54:13] 2026-01-14 05:53:27,645 | INFO     | extracted standard info from prmon json
[2026-01-14 00:54:13] 2026-01-14 05:53:27,645 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 00:54:13] 2026-01-14 05:53:27,645 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 00:54:13] 2026-01-14 05:53:27,646 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 00:54:13] 2026-01-14 05:53:27,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 00:54:13] 2026-01-14 05:53:27,679 | INFO     | fitting pss+swap vs Time
[2026-01-14 00:54:13] 2026-01-14 05:53:27,679 | INFO     | sum of square deviations: 190393506.75294113
[2026-01-14 00:54:13] 2026-01-14 05:53:27,680 | INFO     | sum of deviations: 4797589005.211761
[2026-01-14 00:54:13] 2026-01-14 05:53:27,680 | INFO     | mean x: 1768367267.7764707
[2026-01-14 00:54:13] 2026-01-14 05:53:27,680 | INFO     | mean y: 2682565.905882353
[2026-01-14 00:54:13] 2026-01-14 05:53:27,680 | INFO     | intersect: -44557132029.397804
[2026-01-14 00:54:13] 2026-01-14 05:53:27,680 | INFO     | chi2: 0.3344498862042954
[2026-01-14 00:54:13] 2026-01-14 05:53:27,680 | INFO     | current memory leak: 25.20 B/s (using 85 data points, chi2=0.33)
[2026-01-14 00:54:13] 2026-01-14 05:53:27,681 | INFO     | could have reported an average CPU frequency of 3233 MHz (7 samples)
[2026-01-14 00:54:13] 2026-01-14 05:53:27,697 | INFO     | ..............................
[2026-01-14 00:54:13] 2026-01-14 05:53:27,697 | INFO     | . Timing measurements:
[2026-01-14 00:54:13] 2026-01-14 05:53:27,698 | INFO     | . get job = 0 s
[2026-01-14 00:54:13] 2026-01-14 05:53:27,698 | INFO     | . initial setup = 5 s
[2026-01-14 00:54:13] 2026-01-14 05:53:27,698 | INFO     | . payload setup = 39 s
[2026-01-14 00:54:13] 2026-01-14 05:53:27,698 | INFO     | . stage-in = 0 s
[2026-01-14 00:54:13] 2026-01-14 05:53:27,698 | INFO     | . payload execution = 5608 s
[2026-01-14 00:54:13] 2026-01-14 05:53:27,698 | INFO     | . stage-out = 3 s
[2026-01-14 00:54:13] 2026-01-14 05:53:27,698 | INFO     | . log creation = 0 s
[2026-01-14 00:54:13] 2026-01-14 05:53:27,698 | INFO     | ..............................
[2026-01-14 00:54:13] 2026-01-14 05:53:28,064 | INFO     | time since job start (5732s) is within the limit (349056.0s)
[2026-01-14 00:54:13] 2026-01-14 05:53:28,418 | INFO     | 
[2026-01-14 00:54:13] 2026-01-14 05:53:28,418 | INFO     | job summary report
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | --------------------------------------------------
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | PanDA job id: 6969275275
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | task id: 48215263
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | errors: (none)
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | pilot state: finished 
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | transexitcode: 0
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | exeerrorcode: 0
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | exeerrordiag: 
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | exitcode: 0
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | exitmsg: OK
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | cpuconsumptiontime: 21510 s
[2026-01-14 00:54:13] 2026-01-14 05:53:28,419 | INFO     | nevents: 400
[2026-01-14 00:54:13] 2026-01-14 05:53:28,420 | INFO     | neventsw: 0
[2026-01-14 00:54:13] 2026-01-14 05:53:28,420 | INFO     | pid: 1188149
[2026-01-14 00:54:13] 2026-01-14 05:53:28,420 | INFO     | pgrp: 1188149
[2026-01-14 00:54:13] 2026-01-14 05:53:28,420 | INFO     | corecount: 11
[2026-01-14 00:54:13] 2026-01-14 05:53:28,420 | INFO     | event service: False
[2026-01-14 00:54:13] 2026-01-14 05:53:28,420 | INFO     | sizes: {0: 2283712, 1: 2283967, 12: 2283967, 23: 2283995, 27: 2284285, 34: 2284313, 5651: 2311011, 5652: 2311010, 5656: 2320120, 5670: 2320258}
[2026-01-14 00:54:13] 2026-01-14 05:53:28,420 | INFO     | --------------------------------------------------
[2026-01-14 00:54:13] 2026-01-14 05:53:28,420 | INFO     | 
[2026-01-14 00:54:13] 2026-01-14 05:53:28,420 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-14 00:54:13] 2026-01-14 05:53:28,468 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,470 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 00:54:13] 2026-01-14 05:53:28,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,470 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 00:54:13] 2026-01-14 05:53:28,470 | INFO     | job 6969275275 has completed (purged errors)
[2026-01-14 00:54:13] 2026-01-14 05:53:28,470 | INFO     | overall cleanup function is called
[2026-01-14 00:54:13] 2026-01-14 05:53:29,481 | INFO     | --- collectZombieJob: --- 10, [1188149]
[2026-01-14 00:54:13] 2026-01-14 05:53:29,481 | INFO     | zombie collector waiting for pid 1188149
[2026-01-14 00:54:13] 2026-01-14 05:53:29,482 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 00:54:13] 2026-01-14 05:53:29,482 | INFO     | collected zombie processes
[2026-01-14 00:54:13] 2026-01-14 05:53:29,482 | INFO     | will attempt to kill all subprocesses of pid=1188149
[2026-01-14 00:54:13] 2026-01-14 05:53:30,805 | INFO     | process IDs to be killed: [1188149] (in reverse order)
[2026-01-14 00:54:13] 2026-01-14 05:53:31,147 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 00:54:13] 2026-01-14 05:53:31,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 00:54:13] 2026-01-14 05:53:31,240 | INFO     | did not find any defunct processes belonging to 1188149
[2026-01-14 00:54:13] 2026-01-14 05:53:31,323 | INFO     | did not find any defunct processes belonging to 1188149
[2026-01-14 00:54:13] 2026-01-14 05:53:31,323 | INFO     | ready for new job
[2026-01-14 00:54:13] 2026-01-14 05:53:31,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 00:54:13] 2026-01-14 05:53:31,330 | INFO     | ***************************************
[2026-01-14 00:54:13] 2026-01-14 05:53:31,330 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 00:54:13] 2026-01-14 05:53:31,330 | INFO     | ***************************************
[2026-01-14 00:54:13] 2026-01-14 05:53:31,330 | INFO     | 
[2026-01-14 00:54:13] 2026-01-14 05:53:31,348 | INFO     | architecture information:
[2026-01-14 00:54:13] 2026-01-14 05:53:31,357 | INFO     | executing command: cat /etc/os-release
[2026-01-14 00:54:13] 2026-01-14 05:53:31,453 | INFO     | cat /etc/os-release:
[2026-01-14 00:54:13] NAME="CentOS Linux"
[2026-01-14 00:54:13] VERSION="7 (Core)"
[2026-01-14 00:54:13] ID="centos"
[2026-01-14 00:54:13] ID_LIKE="rhel fedora"
[2026-01-14 00:54:13] VERSION_ID="7"
[2026-01-14 00:54:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 00:54:13] ANSI_COLOR="0;31"
[2026-01-14 00:54:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 00:54:13] HOME_URL="https://www.centos.org/"
[2026-01-14 00:54:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 00:54:13] 
[2026-01-14 00:54:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 00:54:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 00:54:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 00:54:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 00:54:13] 
[2026-01-14 00:54:13] 2026-01-14 05:53:31,458 | INFO     | ***************************************
[2026-01-14 00:54:13] 2026-01-14 05:53:31,961 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-14 00:54:13] 2026-01-14 05:53:32,085 | INFO     | sufficient remaining disk space (125228285952 B)
[2026-01-14 00:54:13] 2026-01-14 05:53:32,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 00:54:13] 2026-01-14 05:53:32,085 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 00:54:13] 2026-01-14 05:53:32,085 | INFO     | update_server=False
[2026-01-14 00:54:13] 2026-01-14 05:53:32,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 00:54:13] 2026-01-14 05:53:32,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 00:54:13] 2026-01-14 05:53:32,321 | INFO     | all job control threads have been joined
[2026-01-14 00:54:13] 2026-01-14 05:53:32,659 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 00:54:13] 2026-01-14 05:53:32,659 | INFO     | aborting loop
[2026-01-14 00:54:13] 2026-01-14 05:53:32,900 | INFO     | all payload control threads have been joined
[2026-01-14 00:54:13] 2026-01-14 05:53:32,921 | INFO     | all data control threads have been joined
[2026-01-14 00:54:13] 2026-01-14 05:53:33,006 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 00:54:13] 2026-01-14 05:53:33,092 | INFO     | [job] retrieve thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:33,327 | INFO     | [job] control thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:33,460 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:33,465 | INFO     | [data] copytool_in thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:33,579 | INFO     | [payload] validate_post thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:33,665 | INFO     | [job] job monitor thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:33,690 | INFO     | [job] validate thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:33,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 00:54:13] 2026-01-14 05:53:33,889 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:33,906 | INFO     | [payload] control thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:33,927 | INFO     | [data] control thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:34,012 | INFO     | [job] queue monitor thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:34,018 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:34,094 | INFO     | [data] copytool_out thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:34,509 | INFO     | [payload] failed_post thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:34,562 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:53:37,827 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 00:54:13] 2026-01-14 05:54:03,797 | INFO     | PID=1179658 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 00:54:13] 2026-01-14 05:54:03,797 | INFO     | .. there are 16 such processes running
[2026-01-14 00:54:13] 2026-01-14 05:54:03,798 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 00:54:13] 2026-01-14 05:54:03,798 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 00:54:13] 2026-01-14 05:54:03,798 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 00:54:13] 2026-01-14 05:54:04,887 | INFO     | [monitor] cgroup control has ended
[2026-01-14 00:54:13] 2026-01-14 05:54:05,293 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900298393408)>', '<ExcThread(monitor, started 139899936159488)>']
[2026-01-14 00:54:13] 2026-01-14 05:54:05,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 00:54:13] 2026-01-14 05:54:05,813 | INFO     | [monitor] control thread has ended
[2026-01-14 00:54:13] 2026-01-14 05:54:10,319 | INFO     | all workflow threads have been joined
[2026-01-14 00:54:13] 2026-01-14 05:54:10,319 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 00:54:13] 2026-01-14 05:54:10,320 | INFO     | traces error code: 0
[2026-01-14 00:54:13] 2026-01-14 05:54:10,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 00:54:13] 2026-01-14 05:54:11,128 [wrapper] ==== pilot stdout END ====
[2026-01-14 00:54:13] 2026-01-14 05:54:11,147 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 00:54:13] 2026-01-14 05:54:11,186 [wrapper] pilotpid: 1179658
[2026-01-14 00:54:13] 2026-01-14 05:54:11,228 [wrapper] Pilot exit status: 0
[2026-01-14 00:54:13] 2026-01-14 05:54:11,375 [wrapper] pandaids: 6969275275
[2026-01-14 00:54:13] 2026-01-14 05:54:12,132 [wrapper] cleanup supervisor_pilot 1400847 1179659
[2026-01-14 00:54:13] 2026-01-14 05:54:12,156 [wrapper] Test setup, not cleaning
[2026-01-14 00:54:13] 2026-01-14 05:54:12,194 [wrapper] apfmon messages muted
[2026-01-14 00:54:13] 2026-01-14 05:54:12,210 [wrapper] ==== wrapper stdout END ====
[2026-01-14 00:54:13] 2026-01-14 05:54:12,255 [wrapper] ==== wrapper stderr END ====
[2026-01-14 00:54:13]  *** Error codes and diagnostics ***
[2026-01-14 00:54:13]     "exeErrorCode": 0,
[2026-01-14 00:54:13]     "exeErrorDiag": "",
[2026-01-14 00:54:13]     "pilotErrorCode": 0,
[2026-01-14 00:54:13]     "pilotErrorDiag": "",
[2026-01-14 00:54:13]  *** Listing of results directory ***
[2026-01-14 00:54:13] total 733004
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas    579449 Jan 13 18:46 pilot3.tar.gz
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 18:46 queuedata.json
[2026-01-14 00:54:13] -rwx------. 1 boincer umatlas     36322 Jan 13 18:47 runpilot2-wrapper.sh
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas       100 Jan 13 23:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 00:54:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 13 23:16 run_atlas
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas       105 Jan 13 23:16 job.xml
[2026-01-14 00:54:13] -rw-r--r--. 2 boincer umatlas 593932282 Jan 13 23:16 EVNT.32794306._000361.pool.root.1
[2026-01-14 00:54:13] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 23:16 start_atlas.sh
[2026-01-14 00:54:13] drwxrwx--x. 2 boincer umatlas      4096 Jan 13 23:16 shared
[2026-01-14 00:54:13] -rw-r--r--. 2 boincer umatlas    592391 Jan 13 23:16 input.tar.gz
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas         0 Jan 13 23:16 boinc_lockfile
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas      2502 Jan 13 23:16 pandaJob.out
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas        57 Jan 13 23:16 setup.sh.local
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas    997226 Jan 13 23:17 agis_schedconf.cvmfs.json
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas   1516246 Jan 13 23:17 agis_ddmendpoints.agis.ALL.json
[2026-01-14 00:54:13] drwx------. 5 boincer umatlas      4096 Jan 13 23:17 pilot3
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas      6957 Jan 14 00:48 init_data.xml
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas 150480406 Jan 14 00:52 HITS.48215263._009001.pool.root.1
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas       530 Jan 14 00:52 boinc_task_state.xml
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas      1040 Jan 14 00:53 memory_monitor_summary.json
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas    369323 Jan 14 00:53 log.48215263._009001.job.log.tgz.1
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas      7765 Jan 14 00:53 heartbeat.json
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas        95 Jan 14 00:54 pilot_heartbeat.json
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas      8192 Jan 14 00:54 boinc_mmap_file
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas        27 Jan 14 00:54 wrapper_checkpoint.txt
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas      4825 Jan 14 00:54 pilotlog.txt
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas    759552 Jan 14 00:54 log.48215263._009001.job.log.1
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas       357 Jan 14 00:54 output.list
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas       620 Jan 14 00:54 runtime_log
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas   1146880 Jan 14 00:54 result.tar.gz
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas      9344 Jan 14 00:54 runtime_log.err
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas       652 Jan 14 00:54 nkdNDmjH3z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmb6iKDml2K20n.diag
[2026-01-14 00:54:13] -rw-r--r--. 1 boincer umatlas     22685 Jan 14 00:54 stderr.txt
[2026-01-14 00:54:13] HITS file was successfully produced:
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas 150480406 Jan 14 00:52 shared/HITS.pool.root.1
[2026-01-14 00:54:13]  *** Contents of shared directory: ***
[2026-01-14 00:54:13] total 728692
[2026-01-14 00:54:13] -rw-r--r--. 2 boincer umatlas 593932282 Jan 13 23:16 ATLAS.root_0
[2026-01-14 00:54:13] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 23:16 start_atlas.sh
[2026-01-14 00:54:13] -rw-r--r--. 2 boincer umatlas    592391 Jan 13 23:16 input.tar.gz
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas 150480406 Jan 14 00:52 HITS.pool.root.1
[2026-01-14 00:54:13] -rw-------. 1 boincer umatlas   1146880 Jan 14 00:54 result.tar.gz
00:54:14 (1175459): run_atlas exited; CPU time 21653.259489
00:54:14 (1175459): called boinc_finish(0)

</stderr_txt>
]]>

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