Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:31:08 (1958802): wrapper (7.7.26015): starting
05:31:08 (1958802): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 05:31:08] Arguments: --nthreads 3
[2026-01-14 05:31:08] Threads: 3
[2026-01-14 05:31:08] Checking for CVMFS
[2026-01-14 05:31:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 05:31:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 05:31:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 05:31:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 05:31:08] 2.9.2.0 1812368 437 55620 155118 3 57 20386736 36864000 0 130560 0 394372 99.987 19361 15576 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 05:31:08] CVMFS is ok
[2026-01-14 05:31:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 05:31:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 05:31:08] Further information can be found at the LHC@home message board.
[2026-01-14 05:31:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 05:31:08] Checking for apptainer binary...
[2026-01-14 05:31:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 05:31:08] Running /usr/bin/apptainer --version
[2026-01-14 05:31:08] apptainer version 1.4.2-2.1
[2026-01-14 05:31:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 05:31:08] cosA133a
[2026-01-14 05:31:08] apptainer works
[2026-01-14 05:31:08] Set ATHENA_PROC_NUMBER=3
[2026-01-14 05:31:08] Set ATHENA_CORE_NUMBER=3
[2026-01-14 05:31:08] Starting ATLAS job with PandaID=6969258365
[2026-01-14 05:31:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 06:31:32]  *** The last 200 lines of the pilot log: ***
[2026-01-14 06:31:32] 2026-01-14 05:30:28,319 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6969258365/log.48215263._001642.job.log.tgz.1 /local/data/boinc/slots/0/log.48215263._0016
[2026-01-14 06:31:32] 2026-01-14 05:30:28,331 | INFO     | adding to output.list: log.48215263._001642.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/79/log.48215263._001642.job.log.tg
[2026-01-14 06:31:32] 2026-01-14 05:30:28,331 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 06:31:32] 2026-01-14 05:30:28,331 | INFO     | summary of transferred files:
[2026-01-14 06:31:32] 2026-01-14 05:30:28,331 | INFO     |  -- lfn=log.48215263._001642.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 06:31:32] 2026-01-14 05:30:28,331 | INFO     | stage-out finished correctly
[2026-01-14 06:31:32] 2026-01-14 05:30:29,262 | INFO     | time since job start (3549s) is within the limit (349056.0s)
[2026-01-14 06:31:32] 2026-01-14 05:30:31,131 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 06:31:32] 2026-01-14 05:30:31,269 | INFO     | time since job start (3551s) is within the limit (349056.0s)
[2026-01-14 06:31:32] 2026-01-14 05:30:31,845 | INFO     | job 6969258365 has state=finished
[2026-01-14 06:31:32] 2026-01-14 05:30:31,845 | INFO     | preparing for final server update for job 6969258365 in state='finished'
[2026-01-14 06:31:32] 2026-01-14 05:30:31,846 | INFO     | this job has now completed (state=finished)
[2026-01-14 06:31:32] 2026-01-14 05:30:31,846 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 06:31:32] 2026-01-14 05:30:31,847 | INFO     | log transfer has been attempted: DONE
[2026-01-14 06:31:32] 2026-01-14 05:30:31,847 | INFO     | job 6969258365 has finished - writing final server update
[2026-01-14 06:31:32] 2026-01-14 05:30:31,847 | INFO     | total number of processed events: 400 (read)
[2026-01-14 06:31:32] 2026-01-14 05:30:31,849 | INFO     | executing command: lscpu
[2026-01-14 06:31:32] 2026-01-14 05:30:31,897 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 06:31:32] 2026-01-14 05:30:33,274 | INFO     | time since job start (3553s) is within the limit (349056.0s)
[2026-01-14 06:31:32] 2026-01-14 05:30:33,366 | WARNING  | process 1968982 can no longer be monitored (due to stat problems) - aborting
[2026-01-14 06:31:32] 2026-01-14 05:30:33,366 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6969258365/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 06:31:32] 2026-01-14 05:30:33,367 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6969258365/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 06:31:32] 2026-01-14 05:30:33,367 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-14 06:31:32] 2026-01-14 05:30:33,367 | WARNING  | maxPSS not found in memory monitor output
[2026-01-14 06:31:32] 2026-01-14 05:30:33,367 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2331002 B
[2026-01-14 06:31:32] 2026-01-14 05:30:33,367 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15843 B
[2026-01-14 06:31:32] 2026-01-14 05:30:33,367 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 06:31:32] 2026-01-14 05:30:35,281 | INFO     | time since job start (3555s) is within the limit (349056.0s)
[2026-01-14 06:31:32] 2026-01-14 05:30:37,288 | INFO     | time since job start (3557s) is within the limit (349056.0s)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,460 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 06:31:32] 2026-01-14 05:30:38,462 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4340.847666666667
[2026-01-14 06:31:32] 2026-01-14 05:30:38,464 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6969258365/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,465 | INFO     | extracted standard info from prmon json
[2026-01-14 06:31:32] 2026-01-14 05:30:38,465 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 06:31:32] 2026-01-14 05:30:38,465 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 06:31:32] 2026-01-14 05:30:38,465 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 06:31:32] 2026-01-14 05:30:38,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | fitting pss+swap vs Time
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | sum of square deviations: 41117050.0
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | sum of deviations: -5927882339.000001
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | mean x: 1768366935.0
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | mean y: 2601576.1960784313
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | intersect: 254949664238.96158
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | chi2: 0.07455269392131786
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | current memory leak: -144.17 B/s (using 51 data points, chi2=0.07)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | could have reported an average CPU frequency of 4273 MHz (5 samples)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | ..............................
[2026-01-14 06:31:32] 2026-01-14 05:30:38,466 | INFO     | . Timing measurements:
[2026-01-14 06:31:32] 2026-01-14 05:30:38,467 | INFO     | . get job = 0 s
[2026-01-14 06:31:32] 2026-01-14 05:30:38,467 | INFO     | . initial setup = 1 s
[2026-01-14 06:31:32] 2026-01-14 05:30:38,467 | INFO     | . payload setup = 4 s
[2026-01-14 06:31:32] 2026-01-14 05:30:38,467 | INFO     | . stage-in = 0 s
[2026-01-14 06:31:32] 2026-01-14 05:30:38,467 | INFO     | . payload execution = 3522 s
[2026-01-14 06:31:32] 2026-01-14 05:30:38,467 | INFO     | . stage-out = 0 s
[2026-01-14 06:31:32] 2026-01-14 05:30:38,467 | INFO     | . log creation = 0 s
[2026-01-14 06:31:32] 2026-01-14 05:30:38,467 | INFO     | ..............................
[2026-01-14 06:31:32] 2026-01-14 05:30:38,489 | INFO     | sufficient remaining disk space (337116135424 B)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,498 | INFO     | 
[2026-01-14 06:31:32] 2026-01-14 05:30:38,498 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,498 | INFO     | job summary report
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | --------------------------------------------------
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | PanDA job id: 6969258365
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | task id: 48215263
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | errors: (none)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | pilot state: finished 
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | transexitcode: 0
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | exeerrorcode: 0
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | exeerrordiag: 
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | exitcode: 0
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | exitmsg: OK
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | cpuconsumptiontime: 9946 s
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | nevents: 400
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | neventsw: 0
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | pid: 1968982
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | pgrp: 1968982
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | corecount: 3
[2026-01-14 06:31:32] 2026-01-14 05:30:38,499 | INFO     | event service: False
[2026-01-14 06:31:32] 2026-01-14 05:30:38,500 | INFO     | sizes: {0: 2283945, 5: 2284207, 10: 2284263, 3530: 2309960, 3531: 2318964, 3534: 2319020, 3541: 2319374}
[2026-01-14 06:31:32] 2026-01-14 05:30:38,500 | INFO     | --------------------------------------------------
[2026-01-14 06:31:32] 2026-01-14 05:30:38,500 | INFO     | 
[2026-01-14 06:31:32] 2026-01-14 05:30:38,500 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-14 06:31:32] 2026-01-14 05:30:38,501 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6969258365: 2619819 B (within 4404019200 B limit)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,502 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6969258365/HITS.48215263._001642.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,502 | INFO     | total size of present files: 0 B (workdir size: 2619819 B)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,502 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6969258365/HITS.48215263._001642.pool.root.1 since it does not exist
[2026-01-14 06:31:32] 2026-01-14 05:30:38,511 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,511 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,511 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,511 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | job 6969258365 has completed (purged errors)
[2026-01-14 06:31:32] 2026-01-14 05:30:38,512 | INFO     | overall cleanup function is called
[2026-01-14 06:31:32] 2026-01-14 05:30:38,543 | INFO     | number of running child processes to parent process 1968982: 1
[2026-01-14 06:31:32] 2026-01-14 05:30:38,543 | INFO     | maximum number of monitored processes: 6
[2026-01-14 06:31:32] 2026-01-14 05:30:38,543 | INFO     | aborting job monitoring since job object (job id=6969258365) has expired
[2026-01-14 06:31:32] 2026-01-14 05:30:39,517 | INFO     | --- collectZombieJob: --- 10, [1968982]
[2026-01-14 06:31:32] 2026-01-14 05:30:39,518 | INFO     | zombie collector waiting for pid 1968982
[2026-01-14 06:31:32] 2026-01-14 05:30:39,518 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 06:31:32] 2026-01-14 05:30:39,518 | INFO     | collected zombie processes
[2026-01-14 06:31:32] 2026-01-14 05:30:39,518 | INFO     | will attempt to kill all subprocesses of pid=1968982
[2026-01-14 06:31:32] 2026-01-14 05:30:39,557 | INFO     | process IDs to be killed: [1968982] (in reverse order)
[2026-01-14 06:31:32] 2026-01-14 05:30:39,580 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 06:31:32] 2026-01-14 05:30:39,580 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 06:31:32] 2026-01-14 05:30:39,581 | INFO     | did not find any defunct processes belonging to 1968982
[2026-01-14 06:31:32] 2026-01-14 05:30:39,582 | INFO     | did not find any defunct processes belonging to 1968982
[2026-01-14 06:31:32] 2026-01-14 05:30:39,582 | INFO     | ready for new job
[2026-01-14 06:31:32] 2026-01-14 05:30:39,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 06:31:32] 2026-01-14 05:30:39,582 | INFO     | ***************************************
[2026-01-14 06:31:32] 2026-01-14 05:30:39,582 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 06:31:32] 2026-01-14 05:30:39,582 | INFO     | ***************************************
[2026-01-14 06:31:32] 2026-01-14 05:30:39,582 | INFO     | 
[2026-01-14 06:31:32] 2026-01-14 05:30:39,583 | INFO     | architecture information:
[2026-01-14 06:31:32] 2026-01-14 05:30:39,583 | INFO     | executing command: cat /etc/os-release
[2026-01-14 06:31:32] 2026-01-14 05:30:39,592 | INFO     | cat /etc/os-release:
[2026-01-14 06:31:32] NAME="CentOS Linux"
[2026-01-14 06:31:32] VERSION="7 (Core)"
[2026-01-14 06:31:32] ID="centos"
[2026-01-14 06:31:32] ID_LIKE="rhel fedora"
[2026-01-14 06:31:32] VERSION_ID="7"
[2026-01-14 06:31:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 06:31:32] ANSI_COLOR="0;31"
[2026-01-14 06:31:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 06:31:32] HOME_URL="https://www.centos.org/"
[2026-01-14 06:31:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 06:31:32] 
[2026-01-14 06:31:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 06:31:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 06:31:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 06:31:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 06:31:32] 
[2026-01-14 06:31:32] 2026-01-14 05:30:39,592 | INFO     | ***************************************
[2026-01-14 06:31:32] 2026-01-14 05:30:40,096 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 06:31:32] 2026-01-14 05:30:40,108 | INFO     | sufficient remaining disk space (337119281152 B)
[2026-01-14 06:31:32] 2026-01-14 05:30:40,109 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 06:31:32] 2026-01-14 05:30:40,109 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 06:31:32] 2026-01-14 05:30:40,109 | INFO     | update_server=False
[2026-01-14 06:31:32] 2026-01-14 05:30:40,109 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 06:31:32] 2026-01-14 05:30:40,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 06:31:32] 2026-01-14 05:30:40,109 | INFO     | aborting loop
[2026-01-14 06:31:32] 2026-01-14 05:30:40,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 06:31:32] 2026-01-14 05:30:40,651 | INFO     | all job control threads have been joined
[2026-01-14 06:31:32] 2026-01-14 05:30:40,841 | INFO     | all data control threads have been joined
[2026-01-14 06:31:32] 2026-01-14 05:30:41,115 | INFO     | [job] retrieve thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,115 | INFO     | [job] job monitor thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,116 | INFO     | [job] queue monitor thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,355 | INFO     | all payload control threads have been joined
[2026-01-14 06:31:32] 2026-01-14 05:30:41,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 06:31:32] 2026-01-14 05:30:41,406 | INFO     | [payload] validate_post thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,464 | INFO     | [job] validate thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,613 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,655 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,656 | INFO     | [job] control thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 06:31:32] 2026-01-14 05:30:41,847 | INFO     | [data] control thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,909 | INFO     | [payload] failed_post thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:41,955 | INFO     | [data] copytool_in thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:42,078 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:42,308 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:42,361 | INFO     | [payload] control thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:43,386 | INFO     | [data] copytool_out thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:30:45,680 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 06:31:32] 2026-01-14 05:31:10,409 | INFO     | PID=1962536 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 06:31:32] 2026-01-14 05:31:10,409 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 06:31:32] 2026-01-14 05:31:10,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 06:31:32] 2026-01-14 05:31:10,409 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 06:31:32] 2026-01-14 05:31:19,414 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-01-14 06:31:32] 2026-01-14 05:31:26,065 | INFO     | [monitor] cgroup control has ended
[2026-01-14 06:31:32] 2026-01-14 05:31:27,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140153785653056)>', '<ExcThread(monitor, started 140153121117952)>']
[2026-01-14 06:31:32] 2026-01-14 05:31:28,504 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 06:31:32] 2026-01-14 05:31:28,504 | INFO     | [monitor] control thread has ended
[2026-01-14 06:31:32] 2026-01-14 05:31:32,816 | INFO     | all workflow threads have been joined
[2026-01-14 06:31:32] 2026-01-14 05:31:32,816 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 06:31:32] 2026-01-14 05:31:32,817 | INFO     | traces error code: 0
[2026-01-14 06:31:32] 2026-01-14 05:31:32,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 06:31:32] 2026-01-14 05:31:32,863 [wrapper] ==== pilot stdout END ====
[2026-01-14 06:31:32] 2026-01-14 05:31:32,866 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 06:31:32] 2026-01-14 05:31:32,869 [wrapper] pilotpid: 1962536
[2026-01-14 06:31:32] 2026-01-14 05:31:32,872 [wrapper] Pilot exit status: 0
[2026-01-14 06:31:32] 2026-01-14 05:31:32,880 [wrapper] pandaids: 6969258365
[2026-01-14 06:31:32] 2026-01-14 05:31:32,897 [wrapper] cleanup supervisor_pilot 1980799 1962537
[2026-01-14 06:31:32] 2026-01-14 05:31:32,900 [wrapper] Test setup, not cleaning
[2026-01-14 06:31:32] 2026-01-14 05:31:32,903 [wrapper] apfmon messages muted
[2026-01-14 06:31:32] 2026-01-14 05:31:32,905 [wrapper] ==== wrapper stdout END ====
[2026-01-14 06:31:32] 2026-01-14 05:31:32,908 [wrapper] ==== wrapper stderr END ====
[2026-01-14 06:31:32]  *** Error codes and diagnostics ***
[2026-01-14 06:31:32]     "exeErrorCode": 0,
[2026-01-14 06:31:32]     "exeErrorDiag": "",
[2026-01-14 06:31:32]     "pilotErrorCode": 0,
[2026-01-14 06:31:32]     "pilotErrorDiag": "",
[2026-01-14 06:31:32]  *** Listing of results directory ***
[2026-01-14 06:31:32] total 728560
[2026-01-14 06:31:32] -rwx------ 1 boinc boinc     36322 Jan 13 22:47 runpilot2-wrapper.sh
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:50 pilot3.tar.gz
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc      5112 Jan 13 22:52 queuedata.json
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc       100 Jan 14 05:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 06:31:32] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 05:31 run_atlas
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc       105 Jan 14 05:31 job.xml
[2026-01-14 06:31:32] -rw-r--r-- 2 boinc boinc 590514171 Jan 14 05:31 EVNT.32794306._000066.pool.root.1
[2026-01-14 06:31:32] -rw-r--r-- 2 boinc boinc    592386 Jan 14 05:31 input.tar.gz
[2026-01-14 06:31:32] -rw-r--r-- 2 boinc boinc     15847 Jan 14 05:31 start_atlas.sh
[2026-01-14 06:31:32] drwxrwx--x 2 boinc boinc      4096 Jan 14 05:31 shared
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc         0 Jan 14 05:31 boinc_setup_complete
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc      6274 Jan 14 05:31 init_data.xml
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc         0 Jan 14 05:31 boinc_lockfile
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc      2503 Jan 14 05:31 pandaJob.out
[2026-01-14 06:31:32] -rw------- 1 boinc boinc    997226 Jan 14 05:31 agis_schedconf.cvmfs.json
[2026-01-14 06:31:32] -rw------- 1 boinc boinc   1516246 Jan 14 05:31 agis_ddmendpoints.agis.ALL.json
[2026-01-14 06:31:32] drwx------ 5 boinc boinc      4096 Jan 14 05:31 pilot3
[2026-01-14 06:31:32] -rw------- 1 boinc boinc 150066512 Jan 14 06:30 HITS.48215263._001642.pool.root.1
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc       529 Jan 14 06:30 boinc_task_state.xml
[2026-01-14 06:31:32] -rw------- 1 boinc boinc      1012 Jan 14 06:30 memory_monitor_summary.json
[2026-01-14 06:31:32] -rw------- 1 boinc boinc    237196 Jan 14 06:30 log.48215263._001642.job.log.tgz.1
[2026-01-14 06:31:32] -rw------- 1 boinc boinc        95 Jan 14 06:30 pilot_heartbeat.json
[2026-01-14 06:31:32] -rw------- 1 boinc boinc      7748 Jan 14 06:30 heartbeat.json
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc      8192 Jan 14 06:31 boinc_mmap_file
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc        26 Jan 14 06:31 wrapper_checkpoint.txt
[2026-01-14 06:31:32] -rw------- 1 boinc boinc      4752 Jan 14 06:31 pilotlog.txt
[2026-01-14 06:31:32] -rw------- 1 boinc boinc    536740 Jan 14 06:31 log.48215263._001642.job.log.1
[2026-01-14 06:31:32] -rw------- 1 boinc boinc       357 Jan 14 06:31 output.list
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc       620 Jan 14 06:31 runtime_log
[2026-01-14 06:31:32] -rw------- 1 boinc boinc    788480 Jan 14 06:31 result.tar.gz
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc      8907 Jan 14 06:31 runtime_log.err
[2026-01-14 06:31:32] -rw------- 1 boinc boinc       659 Jan 14 06:31 Kr5MDmZP1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiXoKDmGrNdSn.diag
[2026-01-14 06:31:32] -rw-r--r-- 1 boinc boinc     22706 Jan 14 06:31 stderr.txt
[2026-01-14 06:31:32] HITS file was successfully produced:
[2026-01-14 06:31:32] -rw------- 1 boinc boinc 150066512 Jan 14 06:30 shared/HITS.pool.root.1
[2026-01-14 06:31:32]  *** Contents of shared directory: ***
[2026-01-14 06:31:32] total 724600
[2026-01-14 06:31:32] -rw-r--r-- 2 boinc boinc 590514171 Jan 14 05:31 ATLAS.root_0
[2026-01-14 06:31:32] -rw-r--r-- 2 boinc boinc    592386 Jan 14 05:31 input.tar.gz
[2026-01-14 06:31:32] -rw-r--r-- 2 boinc boinc     15847 Jan 14 05:31 start_atlas.sh
[2026-01-14 06:31:32] -rw------- 1 boinc boinc 150066512 Jan 14 06:30 HITS.pool.root.1
[2026-01-14 06:31:32] -rw------- 1 boinc boinc    788480 Jan 14 06:31 result.tar.gz
06:31:34 (1958802): run_atlas exited; CPU time 9966.752676
06:31:34 (1958802): called boinc_finish(0)

</stderr_txt>
]]>

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