Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:34:23 (21006): wrapper (7.7.26015): starting
21:34:23 (21006): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 21:34:23] Arguments: --nthreads 8
[2026-01-13 21:34:23] Threads: 8
[2026-01-13 21:34:23] Checking for CVMFS
[2026-01-13 21:34:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 21:34:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 21:34:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 21:34:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 21:34:24] 2.11.2.0 6491 78913 131328 155114 2 57 12873038 18432000 960 130560 0 47546433 99.991 2616528 33735 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 21:34:24] CVMFS is ok
[2026-01-13 21:34:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 21:34:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 21:34:24] Further information can be found at the LHC@home message board.
[2026-01-13 21:34:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 21:34:24] Checking for apptainer binary...
[2026-01-13 21:34:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 21:34:24] Running /usr/bin/apptainer --version
[2026-01-13 21:34:24] apptainer version 1.3.2-1.el7
[2026-01-13 21:34:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 21:34:24] c-206-29.aglt2.org
[2026-01-13 21:34:24] apptainer works
[2026-01-13 21:34:24] Set ATHENA_PROC_NUMBER=8
[2026-01-13 21:34:24] Set ATHENA_CORE_NUMBER=8
[2026-01-13 21:34:24] Starting ATLAS job with PandaID=6969257274
[2026-01-13 21:34:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 23:34:01]  *** The last 200 lines of the pilot log: ***
[2026-01-13 23:34:01] 2026-01-14 04:33:26,437 | INFO     | total number of processed events: 400 (read)
[2026-01-13 23:34:01] 2026-01-14 04:33:26,438 | INFO     | executing command: lscpu
[2026-01-13 23:34:01] 2026-01-14 04:33:26,457 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 23:34:01] 2026-01-14 04:33:28,370 | INFO     | time since job start (7134s) is within the limit (349056.0s)
[2026-01-13 23:34:01] 2026-01-14 04:33:28,437 | WARNING  | process 12993 can no longer be monitored (due to stat problems) - aborting
[2026-01-13 23:34:01] 2026-01-14 04:33:28,437 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6969257274/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 23:34:01] 2026-01-14 04:33:28,568 | INFO     | number of running child processes to parent process 12993: 1
[2026-01-13 23:34:01] 2026-01-14 04:33:28,568 | INFO     | maximum number of monitored processes: 6
[2026-01-13 23:34:01] 2026-01-14 04:33:29,656 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-13 23:34:01] 2026-01-14 04:33:29,660 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2039.7083333333333
[2026-01-13 23:34:01] 2026-01-14 04:33:29,662 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6969257274/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 23:34:01] 2026-01-14 04:33:29,663 | INFO     | extracted standard info from prmon json
[2026-01-13 23:34:01] 2026-01-14 04:33:29,663 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 23:34:01] 2026-01-14 04:33:29,663 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 23:34:01] 2026-01-14 04:33:29,663 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 23:34:01] 2026-01-14 04:33:29,663 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 23:34:01] 2026-01-14 04:33:29,665 | INFO     | fitting pss+swap vs Time
[2026-01-13 23:34:01] 2026-01-14 04:33:29,666 | INFO     | sum of square deviations: 496597218.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,666 | INFO     | sum of deviations: 9444268330.999998
[2026-01-13 23:34:01] 2026-01-14 04:33:29,666 | INFO     | mean x: 1768361637.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,666 | INFO     | mean y: 2516675.111111111
[2026-01-13 23:34:01] 2026-01-14 04:33:29,666 | INFO     | intersect: -33628122403.649124
[2026-01-13 23:34:01] 2026-01-14 04:33:29,667 | INFO     | chi2: 1.310700988430767
[2026-01-13 23:34:01] 2026-01-14 04:33:29,667 | INFO     | sum of square deviations: 435610028.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,667 | INFO     | sum of deviations: 9024456662.5
[2026-01-13 23:34:01] 2026-01-14 04:33:29,668 | INFO     | mean x: 1768361484.5
[2026-01-13 23:34:01] 2026-01-14 04:33:29,668 | INFO     | mean y: 2515625.4375
[2026-01-13 23:34:01] 2026-01-14 04:33:29,668 | INFO     | intersect: -36632319559.08313
[2026-01-13 23:34:01] 2026-01-14 04:33:29,668 | INFO     | chi2: 1.3128467264306594
[2026-01-13 23:34:01] 2026-01-14 04:33:29,668 | INFO     | current chi2=1.3128467264306594 (change=-0.16370919216757063 %)
[2026-01-13 23:34:01] 2026-01-14 04:33:29,668 | INFO     | right removable region: 111
[2026-01-13 23:34:01] 2026-01-14 04:33:29,669 | INFO     | sum of square deviations: 435610028.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,669 | INFO     | sum of deviations: -6215874075.000001
[2026-01-13 23:34:01] 2026-01-14 04:33:29,669 | INFO     | mean x: 1768361789.5
[2026-01-13 23:34:01] 2026-01-14 04:33:29,669 | INFO     | mean y: 2554977.4464285714
[2026-01-13 23:34:01] 2026-01-14 04:33:29,669 | INFO     | intersect: 25235936892.551605
[2026-01-13 23:34:01] 2026-01-14 04:33:29,670 | INFO     | chi2: 0.024294483379636685
[2026-01-13 23:34:01] 2026-01-14 04:33:29,670 | INFO     | current chi2=0.024294483379636685 (change=98.1464511285123 %)
[2026-01-13 23:34:01] 2026-01-14 04:33:29,670 | INFO     | sum of square deviations: 379832238.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,670 | INFO     | sum of deviations: -5505118972.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,670 | INFO     | mean x: 1768361942.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,671 | INFO     | mean y: 2553021.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,671 | INFO     | intersect: 25632401944.63708
[2026-01-13 23:34:01] 2026-01-14 04:33:29,671 | INFO     | chi2: 0.02416404393283607
[2026-01-13 23:34:01] 2026-01-14 04:33:29,671 | INFO     | current chi2=0.02416404393283607 (change=0.5369097369238546 %)
[2026-01-13 23:34:01] 2026-01-14 04:33:29,671 | INFO     | left removable region: 20
[2026-01-13 23:34:01] 2026-01-14 04:33:29,671 | INFO     | sum of square deviations: 233641590.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,672 | INFO     | sum of deviations: -2840277059.0000005
[2026-01-13 23:34:01] 2026-01-14 04:33:29,672 | INFO     | mean x: 1768362064.0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,672 | INFO     | mean y: 2545109.659340659
[2026-01-13 23:34:01] 2026-01-14 04:33:29,672 | INFO     | intersect: 21499737464.7751
[2026-01-13 23:34:01] 2026-01-14 04:33:29,672 | INFO     | chi2: 0.02028038794811456
[2026-01-13 23:34:01] 2026-01-14 04:33:29,672 | INFO     | current memory leak: -12.16 B/s (using 91 data points, chi2=0.02)
[2026-01-13 23:34:01] 2026-01-14 04:33:29,673 | INFO     | could have reported an average CPU frequency of 2337 MHz (7 samples)
[2026-01-13 23:34:01] 2026-01-14 04:33:29,673 | INFO     | ..............................
[2026-01-13 23:34:01] 2026-01-14 04:33:29,673 | INFO     | . Timing measurements:
[2026-01-13 23:34:01] 2026-01-14 04:33:29,673 | INFO     | . get job = 0 s
[2026-01-13 23:34:01] 2026-01-14 04:33:29,673 | INFO     | . initial setup = 2 s
[2026-01-13 23:34:01] 2026-01-14 04:33:29,673 | INFO     | . payload setup = 5 s
[2026-01-13 23:34:01] 2026-01-14 04:33:29,673 | INFO     | . stage-in = 0 s
[2026-01-13 23:34:01] 2026-01-14 04:33:29,673 | INFO     | . payload execution = 7107 s
[2026-01-13 23:34:01] 2026-01-14 04:33:29,673 | INFO     | . stage-out = 0 s
[2026-01-13 23:34:01] 2026-01-14 04:33:29,674 | INFO     | . log creation = 0 s
[2026-01-13 23:34:01] 2026-01-14 04:33:29,674 | INFO     | ..............................
[2026-01-13 23:34:01] 2026-01-14 04:33:29,984 | INFO     | 
[2026-01-13 23:34:01] 2026-01-14 04:33:29,984 | INFO     | job summary report
[2026-01-13 23:34:01] 2026-01-14 04:33:29,984 | INFO     | --------------------------------------------------
[2026-01-13 23:34:01] 2026-01-14 04:33:29,984 | INFO     | PanDA job id: 6969257274
[2026-01-13 23:34:01] 2026-01-14 04:33:29,984 | INFO     | task id: 48215263
[2026-01-13 23:34:01] 2026-01-14 04:33:29,984 | INFO     | errors: (none)
[2026-01-13 23:34:01] 2026-01-14 04:33:29,984 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | pilot state: finished 
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | transexitcode: 0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | exeerrorcode: 0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | exeerrordiag: 
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | exitcode: 0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | exitmsg: OK
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | cpuconsumptiontime: 54102 s
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | nevents: 400
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | neventsw: 0
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | pid: 12993
[2026-01-13 23:34:01] 2026-01-14 04:33:29,985 | INFO     | pgrp: 12993
[2026-01-13 23:34:01] 2026-01-14 04:33:29,986 | INFO     | corecount: 8
[2026-01-13 23:34:01] 2026-01-14 04:33:29,986 | INFO     | event service: False
[2026-01-13 23:34:01] 2026-01-14 04:33:29,986 | INFO     | sizes: {0: 2283942, 4: 2284204, 11: 2284232, 7116: 2311567, 7117: 2320621, 7121: 2320759}
[2026-01-13 23:34:01] 2026-01-14 04:33:29,986 | INFO     | --------------------------------------------------
[2026-01-13 23:34:01] 2026-01-14 04:33:29,986 | INFO     | 
[2026-01-13 23:34:01] 2026-01-14 04:33:29,986 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-13 23:34:01] 2026-01-14 04:33:30,001 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,001 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,001 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,001 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,002 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,003 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 23:34:01] 2026-01-14 04:33:30,003 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,003 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 23:34:01] 2026-01-14 04:33:30,003 | INFO     | job 6969257274 has completed (purged errors)
[2026-01-13 23:34:01] 2026-01-14 04:33:30,003 | INFO     | overall cleanup function is called
[2026-01-13 23:34:01] 2026-01-14 04:33:31,011 | INFO     | --- collectZombieJob: --- 10, [12993]
[2026-01-13 23:34:01] 2026-01-14 04:33:31,012 | INFO     | zombie collector waiting for pid 12993
[2026-01-13 23:34:01] 2026-01-14 04:33:31,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 23:34:01] 2026-01-14 04:33:31,013 | INFO     | collected zombie processes
[2026-01-13 23:34:01] 2026-01-14 04:33:31,013 | INFO     | will attempt to kill all subprocesses of pid=12993
[2026-01-13 23:34:01] 2026-01-14 04:33:31,170 | INFO     | process IDs to be killed: [12993] (in reverse order)
[2026-01-13 23:34:01] 2026-01-14 04:33:31,215 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 23:34:01] 2026-01-14 04:33:31,216 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 23:34:01] 2026-01-14 04:33:31,218 | INFO     | did not find any defunct processes belonging to 12993
[2026-01-13 23:34:01] 2026-01-14 04:33:31,221 | INFO     | did not find any defunct processes belonging to 12993
[2026-01-13 23:34:01] 2026-01-14 04:33:31,221 | INFO     | ready for new job
[2026-01-13 23:34:01] 2026-01-14 04:33:31,221 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 23:34:01] 2026-01-14 04:33:31,223 | INFO     | ***************************************
[2026-01-13 23:34:01] 2026-01-14 04:33:31,223 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 23:34:01] 2026-01-14 04:33:31,223 | INFO     | ***************************************
[2026-01-13 23:34:01] 2026-01-14 04:33:31,223 | INFO     | 
[2026-01-13 23:34:01] 2026-01-14 04:33:31,224 | INFO     | architecture information:
[2026-01-13 23:34:01] 2026-01-14 04:33:31,225 | INFO     | executing command: cat /etc/os-release
[2026-01-13 23:34:01] 2026-01-14 04:33:31,236 | INFO     | cat /etc/os-release:
[2026-01-13 23:34:01] NAME="CentOS Linux"
[2026-01-13 23:34:01] VERSION="7 (Core)"
[2026-01-13 23:34:01] ID="centos"
[2026-01-13 23:34:01] ID_LIKE="rhel fedora"
[2026-01-13 23:34:01] VERSION_ID="7"
[2026-01-13 23:34:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 23:34:01] ANSI_COLOR="0;31"
[2026-01-13 23:34:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 23:34:01] HOME_URL="https://www.centos.org/"
[2026-01-13 23:34:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 23:34:01] 
[2026-01-13 23:34:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 23:34:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 23:34:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 23:34:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 23:34:01] 
[2026-01-13 23:34:01] 2026-01-14 04:33:31,237 | INFO     | ***************************************
[2026-01-13 23:34:01] 2026-01-14 04:33:31,740 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-13 23:34:01] 2026-01-14 04:33:31,752 | INFO     | sufficient remaining disk space (25790775296 B)
[2026-01-13 23:34:01] 2026-01-14 04:33:31,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 23:34:01] 2026-01-14 04:33:31,752 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 23:34:01] 2026-01-14 04:33:31,752 | INFO     | update_server=False
[2026-01-13 23:34:01] 2026-01-14 04:33:31,753 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 23:34:01] 2026-01-14 04:33:31,753 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 23:34:01] 2026-01-14 04:33:31,757 | INFO     | all data control threads have been joined
[2026-01-13 23:34:01] 2026-01-14 04:33:32,078 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 23:34:01] 2026-01-14 04:33:32,079 | INFO     | aborting loop
[2026-01-13 23:34:01] 2026-01-14 04:33:32,171 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 23:34:01] 2026-01-14 04:33:32,532 | INFO     | all payload control threads have been joined
[2026-01-13 23:34:01] 2026-01-14 04:33:32,738 | INFO     | all job control threads have been joined
[2026-01-13 23:34:01] 2026-01-14 04:33:32,758 | INFO     | [job] retrieve thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:32,763 | INFO     | [data] control thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:32,792 | INFO     | [payload] validate_post thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:32,915 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:33,084 | INFO     | [job] job monitor thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:33,492 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:33,495 | INFO     | [data] copytool_in thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:33,538 | INFO     | [payload] control thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:33,640 | INFO     | [payload] failed_post thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:33,744 | INFO     | [job] control thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:33,757 | INFO     | [data] copytool_out thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:33,779 | INFO     | [job] validate thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:33,804 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:34,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 23:34:01] 2026-01-14 04:33:35,761 | INFO     | [job] queue monitor thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:36,177 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:42,475 | INFO     | job.realtimelogging is not enabled
[2026-01-13 23:34:01] 2026-01-14 04:33:43,481 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 23:34:01] 2026-01-14 04:33:45,580 | INFO     | [monitor] cgroup control has ended
[2026-01-13 23:34:01] 2026-01-14 04:33:46,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140556888819520)>', '<ExcThread(monitor, started 140556218918656)>']
[2026-01-13 23:34:01] 2026-01-14 04:33:51,383 | INFO     | all workflow threads have been joined
[2026-01-13 23:34:01] 2026-01-14 04:33:51,384 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 23:34:01] 2026-01-14 04:33:51,390 | INFO     | traces error code: 0
[2026-01-13 23:34:01] 2026-01-14 04:33:51,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 23:34:01] 2026-01-14 04:34:01,583 | INFO     | PID=26709 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 23:34:01] 2026-01-14 04:34:01,583 | INFO     | .. there are 2 such processes running
[2026-01-13 23:34:01] 2026-01-14 04:34:01,584 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 23:34:01] 2026-01-14 04:34:01,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 23:34:01] 2026-01-14 04:34:01,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 23:34:01] 2026-01-14 04:34:01,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 23:34:01] 2026-01-14 04:34:01,584 | INFO     | [monitor] control thread has ended
[2026-01-13 23:34:01] 2026-01-14 04:34:01,686 [wrapper] ==== pilot stdout END ====
[2026-01-13 23:34:01] 2026-01-14 04:34:01,689 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 23:34:01] 2026-01-14 04:34:01,691 [wrapper] pilotpid: 26709
[2026-01-13 23:34:01] 2026-01-14 04:34:01,694 [wrapper] Pilot exit status: 0
[2026-01-13 23:34:01] 2026-01-14 04:34:01,702 [wrapper] pandaids: 6969257274
[2026-01-13 23:34:01] 2026-01-14 04:34:01,728 [wrapper] cleanup supervisor_pilot 15392 26710
[2026-01-13 23:34:01] 2026-01-14 04:34:01,730 [wrapper] Test setup, not cleaning
[2026-01-13 23:34:01] 2026-01-14 04:34:01,733 [wrapper] apfmon messages muted
[2026-01-13 23:34:01] 2026-01-14 04:34:01,736 [wrapper] ==== wrapper stdout END ====
[2026-01-13 23:34:01] 2026-01-14 04:34:01,738 [wrapper] ==== wrapper stderr END ====
[2026-01-13 23:34:01]  *** Error codes and diagnostics ***
[2026-01-13 23:34:01]     "exeErrorCode": 0,
[2026-01-13 23:34:01]     "exeErrorDiag": "",
[2026-01-13 23:34:01]     "pilotErrorCode": 0,
[2026-01-13 23:34:01]     "pilotErrorDiag": "",
[2026-01-13 23:34:01]  *** Listing of results directory ***
[2026-01-13 23:34:01] total 742324
[2026-01-13 23:34:01] -rwx------ 1 boincer umatlas     36322 Jan 13 16:46 runpilot2-wrapper.sh
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas      5112 Jan 13 16:47 queuedata.json
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas    579449 Jan 13 16:50 pilot3.tar.gz
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas       100 Jan 13 21:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 23:34:01] -rwxr-xr-x 1 boincer umatlas      7986 Jan 13 21:34 run_atlas
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas       105 Jan 13 21:34 job.xml
[2026-01-13 23:34:01] -rw-r--r-- 2 boincer umatlas 598665903 Jan 13 21:34 EVNT.32794306._000049.pool.root.1
[2026-01-13 23:34:01] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 21:34 start_atlas.sh
[2026-01-13 23:34:01] drwxrwx--x 2 boincer umatlas      4096 Jan 13 21:34 shared
[2026-01-13 23:34:01] -rw-r--r-- 2 boincer umatlas    592390 Jan 13 21:34 input.tar.gz
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas         0 Jan 13 21:34 boinc_lockfile
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas      2503 Jan 13 21:34 pandaJob.out
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas        57 Jan 13 21:34 setup.sh.local
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas    997226 Jan 13 21:34 agis_schedconf.cvmfs.json
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas   1516246 Jan 13 21:34 agis_ddmendpoints.agis.ALL.json
[2026-01-13 23:34:01] drwx------ 5 boincer umatlas      4096 Jan 13 21:34 pilot3
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas      5950 Jan 13 23:28 init_data.xml
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas 154782443 Jan 13 23:32 HITS.48215263._001221.pool.root.1
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas        95 Jan 13 23:33 pilot_heartbeat.json
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas      1049 Jan 13 23:33 memory_monitor_summary.json
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas    371271 Jan 13 23:33 log.48215263._001221.job.log.tgz.1
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas      7845 Jan 13 23:33 heartbeat.json
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas       530 Jan 13 23:33 boinc_task_state.xml
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas      8192 Jan 13 23:33 boinc_mmap_file
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas        27 Jan 13 23:33 wrapper_checkpoint.txt
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas       820 Jan 13 23:34 pilotlog.txt
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas   1014725 Jan 13 23:34 log.48215263._001221.job.log.1
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas       357 Jan 13 23:34 output.list
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas       620 Jan 13 23:34 runtime_log
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas   1402880 Jan 13 23:34 result.tar.gz
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas      9342 Jan 13 23:34 runtime_log.err
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas       657 Jan 13 23:34 nkONDm0O1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1ToKDmw4ubVn.diag
[2026-01-13 23:34:01] -rw-r--r-- 1 boincer umatlas     21273 Jan 13 23:34 stderr.txt
[2026-01-13 23:34:01] HITS file was successfully produced:
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas 154782443 Jan 13 23:32 shared/HITS.pool.root.1
[2026-01-13 23:34:01]  *** Contents of shared directory: ***
[2026-01-13 23:34:01] total 737768
[2026-01-13 23:34:01] -rw-r--r-- 2 boincer umatlas 598665903 Jan 13 21:34 ATLAS.root_0
[2026-01-13 23:34:01] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 21:34 start_atlas.sh
[2026-01-13 23:34:01] -rw-r--r-- 2 boincer umatlas    592390 Jan 13 21:34 input.tar.gz
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas 154782443 Jan 13 23:32 HITS.pool.root.1
[2026-01-13 23:34:01] -rw------- 1 boincer umatlas   1402880 Jan 13 23:34 result.tar.gz
23:34:03 (21006): run_atlas exited; CPU time 54176.889719
23:34:03 (21006): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN