Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:58:52 (3027411): wrapper (7.7.26015): starting
04:58:52 (3027411): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 04:58:52] Arguments: --nthreads 3
[2026-01-14 04:58:52] Threads: 3
[2026-01-14 04:58:52] Checking for CVMFS
[2026-01-14 04:58:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 04:58:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 04:58:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 04:58:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 04:58:52] 2.9.2.0 2866369 438 68324 155116 2 57 23590138 36864001 0 130560 0 432879 99.990 20623 21086 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 04:58:52] CVMFS is ok
[2026-01-14 04:58:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 04:58:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 04:58:52] Further information can be found at the LHC@home message board.
[2026-01-14 04:58:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 04:58:52] Checking for apptainer binary...
[2026-01-14 04:58:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 04:58:52] Running /usr/bin/apptainer --version
[2026-01-14 04:58:52] apptainer version 1.4.1-1.1
[2026-01-14 04:58:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 04:58:52] magicA161a
[2026-01-14 04:58:52] apptainer works
[2026-01-14 04:58:52] Set ATHENA_PROC_NUMBER=3
[2026-01-14 04:58:52] Set ATHENA_CORE_NUMBER=3
[2026-01-14 04:58:52] Starting ATLAS job with PandaID=6969257117
[2026-01-14 04:58:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 05:56:07]  *** The last 200 lines of the pilot log: ***
[2026-01-14 05:56:07] 2026-01-14 04:55:32,884 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 05:56:07] 2026-01-14 04:55:32,884 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 05:56:07] 2026-01-14 04:55:32,884 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 05:56:07] 2026-01-14 04:55:32,884 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 05:56:07] 2026-01-14 04:55:32,884 | INFO     | job 6969257117 has completed (purged errors)
[2026-01-14 05:56:07] 2026-01-14 04:55:32,884 | INFO     | overall cleanup function is called
[2026-01-14 05:56:07] 2026-01-14 04:55:33,890 | INFO     | --- collectZombieJob: --- 10, [3037576]
[2026-01-14 05:56:07] 2026-01-14 04:55:33,890 | INFO     | zombie collector waiting for pid 3037576
[2026-01-14 05:56:07] 2026-01-14 04:55:33,891 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 05:56:07] 2026-01-14 04:55:33,891 | INFO     | collected zombie processes
[2026-01-14 05:56:07] 2026-01-14 04:55:33,891 | INFO     | will attempt to kill all subprocesses of pid=3037576
[2026-01-14 05:56:07] 2026-01-14 04:55:33,933 | INFO     | process IDs to be killed: [3037576] (in reverse order)
[2026-01-14 05:56:07] 2026-01-14 04:55:33,957 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 05:56:07] 2026-01-14 04:55:33,957 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 05:56:07] 2026-01-14 04:55:33,958 | INFO     | did not find any defunct processes belonging to 3037576
[2026-01-14 05:56:07] 2026-01-14 04:55:33,959 | INFO     | did not find any defunct processes belonging to 3037576
[2026-01-14 05:56:07] 2026-01-14 04:55:33,959 | INFO     | ready for new job
[2026-01-14 05:56:07] 2026-01-14 04:55:33,959 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 05:56:07] 2026-01-14 04:55:33,960 | INFO     | ***************************************
[2026-01-14 05:56:07] 2026-01-14 04:55:33,960 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 05:56:07] 2026-01-14 04:55:33,960 | INFO     | ***************************************
[2026-01-14 05:56:07] 2026-01-14 04:55:33,960 | INFO     | 
[2026-01-14 05:56:07] 2026-01-14 04:55:33,961 | INFO     | architecture information:
[2026-01-14 05:56:07] 2026-01-14 04:55:33,961 | INFO     | executing command: cat /etc/os-release
[2026-01-14 05:56:07] 2026-01-14 04:55:33,969 | INFO     | cat /etc/os-release:
[2026-01-14 05:56:07] NAME="CentOS Linux"
[2026-01-14 05:56:07] VERSION="7 (Core)"
[2026-01-14 05:56:07] ID="centos"
[2026-01-14 05:56:07] ID_LIKE="rhel fedora"
[2026-01-14 05:56:07] VERSION_ID="7"
[2026-01-14 05:56:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 05:56:07] ANSI_COLOR="0;31"
[2026-01-14 05:56:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 05:56:07] HOME_URL="https://www.centos.org/"
[2026-01-14 05:56:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 05:56:07] 
[2026-01-14 05:56:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 05:56:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 05:56:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 05:56:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 05:56:07] 
[2026-01-14 05:56:07] 2026-01-14 04:55:33,969 | INFO     | ***************************************
[2026-01-14 05:56:07] 2026-01-14 04:55:34,472 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 05:56:07] 2026-01-14 04:55:34,485 | INFO     | sufficient remaining disk space (381052518400 B)
[2026-01-14 05:56:07] 2026-01-14 04:55:34,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 05:56:07] 2026-01-14 04:55:34,485 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 05:56:07] 2026-01-14 04:55:34,485 | INFO     | update_server=False
[2026-01-14 05:56:07] 2026-01-14 04:55:34,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 05:56:07] 2026-01-14 04:55:34,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 05:56:07] 2026-01-14 04:55:34,485 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 05:56:07] 2026-01-14 04:55:34,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 05:56:07] 2026-01-14 04:55:34,489 | INFO     | aborting loop
[2026-01-14 05:56:07] 2026-01-14 04:55:34,583 | INFO     | all payload control threads have been joined
[2026-01-14 05:56:07] 2026-01-14 04:55:34,746 | INFO     | all data control threads have been joined
[2026-01-14 05:56:07] 2026-01-14 04:55:35,491 | INFO     | [job] retrieve thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:35,491 | INFO     | [job] queue monitor thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:35,492 | INFO     | [job] job monitor thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:35,580 | INFO     | [payload] failed_post thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:35,589 | INFO     | [payload] control thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:35,752 | INFO     | [data] control thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:35,955 | INFO     | all job control threads have been joined
[2026-01-14 05:56:07] 2026-01-14 04:55:36,031 | INFO     | [data] copytool_in thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:36,181 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:36,488 | INFO     | [data] copytool_out thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:36,578 | INFO     | [job] validate thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:36,620 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:36,705 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:36,862 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 05:56:07] 2026-01-14 04:55:36,912 | INFO     | [payload] validate_post thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:36,960 | INFO     | [job] control thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:40,869 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:55:45,514 | INFO     | job.realtimelogging is not enabled
[2026-01-14 05:56:07] 2026-01-14 04:55:46,520 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 05:56:07] 2026-01-14 04:56:01,992 | INFO     | [monitor] cgroup control has ended
[2026-01-14 05:56:07] 2026-01-14 04:56:02,040 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642512594752)>', '<ExcThread(monitor, started 140642160195328)>']
[2026-01-14 05:56:07] 2026-01-14 04:56:04,020 | INFO     | PID=3031131 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 05:56:07] 2026-01-14 04:56:04,020 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 05:56:07] 2026-01-14 04:56:04,020 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 05:56:07] 2026-01-14 04:56:04,020 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 05:56:07] 2026-01-14 04:56:04,020 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 05:56:07] 2026-01-14 04:56:04,020 | INFO     | [monitor] control thread has ended
[2026-01-14 05:56:07] 2026-01-14 04:56:07,065 | INFO     | all workflow threads have been joined
[2026-01-14 05:56:07] 2026-01-14 04:56:07,066 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 05:56:07] 2026-01-14 04:56:07,066 | INFO     | traces error code: 0
[2026-01-14 05:56:07] 2026-01-14 04:56:07,066 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 05:56:07] 2026-01-14 04:56:07,116 [wrapper] ==== pilot stdout END ====
[2026-01-14 05:56:07] 2026-01-14 04:56:07,118 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 05:56:07] 2026-01-14 04:56:07,121 [wrapper] pilotpid: 3031131
[2026-01-14 05:56:07] 2026-01-14 04:56:07,123 [wrapper] Pilot exit status: 0
[2026-01-14 05:56:07] 2026-01-14 04:56:07,130 [wrapper] pandaids: 6969257117
[2026-01-14 05:56:07] 2026-01-14 04:56:07,146 [wrapper] cleanup supervisor_pilot 3046820 3031132
[2026-01-14 05:56:07] 2026-01-14 04:56:07,148 [wrapper] Test setup, not cleaning
[2026-01-14 05:56:07] 2026-01-14 04:56:07,151 [wrapper] apfmon messages muted
[2026-01-14 05:56:07] 2026-01-14 04:56:07,153 [wrapper] ==== wrapper stdout END ====
[2026-01-14 05:56:07] 2026-01-14 04:56:07,155 [wrapper] ==== wrapper stderr END ====
[2026-01-14 05:56:07]  *** Error codes and diagnostics ***
[2026-01-14 05:56:07]     "exeErrorCode": 0,
[2026-01-14 05:56:07]     "exeErrorDiag": "",
[2026-01-14 05:56:07]     "pilotErrorCode": 0,
[2026-01-14 05:56:07]     "pilotErrorDiag": "",
[2026-01-14 05:56:07]  *** Listing of results directory ***
[2026-01-14 05:56:07] total 742248
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:45 pilot3.tar.gz
[2026-01-14 05:56:07] -rwx------ 1 boinc boinc     36322 Jan 13 22:46 runpilot2-wrapper.sh
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc      5112 Jan 13 22:47 queuedata.json
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc       100 Jan 14 04:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 05:56:07] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 04:58 run_atlas
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc       105 Jan 14 04:58 job.xml
[2026-01-14 05:56:07] -rw-r--r-- 2 boinc boinc 599052004 Jan 14 04:58 EVNT.32794306._000043.pool.root.1
[2026-01-14 05:56:07] drwxrwx--x 2 boinc boinc      4096 Jan 14 04:58 shared
[2026-01-14 05:56:07] -rw-r--r-- 2 boinc boinc    592386 Jan 14 04:58 input.tar.gz
[2026-01-14 05:56:07] -rw-r--r-- 2 boinc boinc     15847 Jan 14 04:58 start_atlas.sh
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc         0 Jan 14 04:58 boinc_setup_complete
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc      6448 Jan 14 04:58 init_data.xml
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc         0 Jan 14 04:58 boinc_lockfile
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc      2503 Jan 14 04:58 pandaJob.out
[2026-01-14 05:56:07] -rw------- 1 boinc boinc    997226 Jan 14 04:58 agis_schedconf.cvmfs.json
[2026-01-14 05:56:07] -rw------- 1 boinc boinc   1516246 Jan 14 04:58 agis_ddmendpoints.agis.ALL.json
[2026-01-14 05:56:07] drwx------ 5 boinc boinc      4096 Jan 14 04:58 pilot3
[2026-01-14 05:56:07] -rw------- 1 boinc boinc 155605718 Jan 14 05:55 HITS.48215263._001064.pool.root.1
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc       529 Jan 14 05:55 boinc_task_state.xml
[2026-01-14 05:56:07] -rw------- 1 boinc boinc        95 Jan 14 05:55 pilot_heartbeat.json
[2026-01-14 05:56:07] -rw------- 1 boinc boinc      1014 Jan 14 05:55 memory_monitor_summary.json
[2026-01-14 05:56:07] -rw------- 1 boinc boinc    233069 Jan 14 05:55 log.48215263._001064.job.log.tgz.1
[2026-01-14 05:56:07] -rw------- 1 boinc boinc      7747 Jan 14 05:55 heartbeat.json
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc      8192 Jan 14 05:55 boinc_mmap_file
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc        26 Jan 14 05:55 wrapper_checkpoint.txt
[2026-01-14 05:56:07] -rw------- 1 boinc boinc      4824 Jan 14 05:56 pilotlog.txt
[2026-01-14 05:56:07] -rw------- 1 boinc boinc    515569 Jan 14 05:56 log.48215263._001064.job.log.1
[2026-01-14 05:56:07] -rw------- 1 boinc boinc       357 Jan 14 05:56 output.list
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc       620 Jan 14 05:56 runtime_log
[2026-01-14 05:56:07] -rw------- 1 boinc boinc    768000 Jan 14 05:56 result.tar.gz
[2026-01-14 05:56:07] -rw------- 1 boinc boinc       660 Jan 14 05:56 zweLDm0O1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoSoKDmomuMPm.diag
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc      8917 Jan 14 05:56 runtime_log.err
[2026-01-14 05:56:07] -rw-r--r-- 1 boinc boinc     11309 Jan 14 05:56 stderr.txt
[2026-01-14 05:56:07] HITS file was successfully produced:
[2026-01-14 05:56:07] -rw------- 1 boinc boinc 155605718 Jan 14 05:55 shared/HITS.pool.root.1
[2026-01-14 05:56:07]  *** Contents of shared directory: ***
[2026-01-14 05:56:07] total 738328
[2026-01-14 05:56:07] -rw-r--r-- 2 boinc boinc 599052004 Jan 14 04:58 ATLAS.root_0
[2026-01-14 05:56:07] -rw-r--r-- 2 boinc boinc    592386 Jan 14 04:58 input.tar.gz
[2026-01-14 05:56:07] -rw-r--r-- 2 boinc boinc     15847 Jan 14 04:58 start_atlas.sh
[2026-01-14 05:56:07] -rw------- 1 boinc boinc 155605718 Jan 14 05:55 HITS.pool.root.1
[2026-01-14 05:56:07] -rw------- 1 boinc boinc    768000 Jan 14 05:56 result.tar.gz
05:56:08 (3027411): run_atlas exited; CPU time 9221.732048
05:56:08 (3027411): called boinc_finish(0)

</stderr_txt>
]]>

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