Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:04:43 (3351997): wrapper (7.7.26015): starting
04:04:43 (3351997): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 04:04:43] Arguments: --nthreads 3
[2026-01-14 04:04:43] Threads: 3
[2026-01-14 04:04:43] Checking for CVMFS
[2026-01-14 04:04:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 04:04:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 04:04:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 04:04:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 04:04:43] 2.9.2.0 3329477 55 51144 155114 0 57 20752609 36864001 0 130560 0 60241 99.970 4221 4183 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 04:04:43] CVMFS is ok
[2026-01-14 04:04:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 04:04:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 04:04:43] Further information can be found at the LHC@home message board.
[2026-01-14 04:04:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 04:04:43] Checking for apptainer binary...
[2026-01-14 04:04:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 04:04:43] Running /usr/bin/apptainer --version
[2026-01-14 04:04:43] apptainer version 1.4.1-1.1
[2026-01-14 04:04:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 04:04:43] magicA252
[2026-01-14 04:04:43] apptainer works
[2026-01-14 04:04:43] Set ATHENA_PROC_NUMBER=3
[2026-01-14 04:04:43] Set ATHENA_CORE_NUMBER=3
[2026-01-14 04:04:43] Starting ATLAS job with PandaID=6969258293
[2026-01-14 04:04:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 04:59:59]  *** The last 200 lines of the pilot log: ***
[2026-01-14 04:59:59] 2026-01-14 03:59:16,266 | INFO     | 
[2026-01-14 04:59:59] 2026-01-14 03:59:16,266 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-14 04:59:59] 2026-01-14 03:59:16,277 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,277 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,277 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | job 6969258293 has completed (purged errors)
[2026-01-14 04:59:59] 2026-01-14 03:59:16,278 | INFO     | overall cleanup function is called
[2026-01-14 04:59:59] 2026-01-14 03:59:17,281 | INFO     | --- collectZombieJob: --- 10, [3362164]
[2026-01-14 04:59:59] 2026-01-14 03:59:17,281 | INFO     | zombie collector waiting for pid 3362164
[2026-01-14 04:59:59] 2026-01-14 03:59:17,281 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 04:59:59] 2026-01-14 03:59:17,281 | INFO     | collected zombie processes
[2026-01-14 04:59:59] 2026-01-14 03:59:17,281 | INFO     | will attempt to kill all subprocesses of pid=3362164
[2026-01-14 04:59:59] 2026-01-14 03:59:17,323 | INFO     | process IDs to be killed: [3362164] (in reverse order)
[2026-01-14 04:59:59] 2026-01-14 03:59:17,348 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 04:59:59] 2026-01-14 03:59:17,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 04:59:59] 2026-01-14 03:59:17,349 | INFO     | did not find any defunct processes belonging to 3362164
[2026-01-14 04:59:59] 2026-01-14 03:59:17,350 | INFO     | did not find any defunct processes belonging to 3362164
[2026-01-14 04:59:59] 2026-01-14 03:59:17,351 | INFO     | ready for new job
[2026-01-14 04:59:59] 2026-01-14 03:59:17,351 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 04:59:59] 2026-01-14 03:59:17,351 | INFO     | ***************************************
[2026-01-14 04:59:59] 2026-01-14 03:59:17,351 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 04:59:59] 2026-01-14 03:59:17,351 | INFO     | ***************************************
[2026-01-14 04:59:59] 2026-01-14 03:59:17,351 | INFO     | 
[2026-01-14 04:59:59] 2026-01-14 03:59:17,352 | INFO     | architecture information:
[2026-01-14 04:59:59] 2026-01-14 03:59:17,352 | INFO     | executing command: cat /etc/os-release
[2026-01-14 04:59:59] 2026-01-14 03:59:17,361 | INFO     | cat /etc/os-release:
[2026-01-14 04:59:59] NAME="CentOS Linux"
[2026-01-14 04:59:59] VERSION="7 (Core)"
[2026-01-14 04:59:59] ID="centos"
[2026-01-14 04:59:59] ID_LIKE="rhel fedora"
[2026-01-14 04:59:59] VERSION_ID="7"
[2026-01-14 04:59:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 04:59:59] ANSI_COLOR="0;31"
[2026-01-14 04:59:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 04:59:59] HOME_URL="https://www.centos.org/"
[2026-01-14 04:59:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 04:59:59] 
[2026-01-14 04:59:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 04:59:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 04:59:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 04:59:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 04:59:59] 
[2026-01-14 04:59:59] 2026-01-14 03:59:17,361 | INFO     | ***************************************
[2026-01-14 04:59:59] 2026-01-14 03:59:17,864 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 04:59:59] 2026-01-14 03:59:17,877 | INFO     | sufficient remaining disk space (383984336896 B)
[2026-01-14 04:59:59] 2026-01-14 03:59:17,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 04:59:59] 2026-01-14 03:59:17,877 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 04:59:59] 2026-01-14 03:59:17,877 | INFO     | update_server=False
[2026-01-14 04:59:59] 2026-01-14 03:59:17,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 04:59:59] 2026-01-14 03:59:17,878 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-14 04:59:59] 2026-01-14 03:59:17,878 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 04:59:59] 2026-01-14 03:59:17,878 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 04:59:59] 2026-01-14 03:59:17,878 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 04:59:59] 2026-01-14 03:59:17,878 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 04:59:59] 2026-01-14 03:59:17,878 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 04:59:59] 2026-01-14 03:59:17,878 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:59:59] 2026-01-14 03:59:17,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:59:59] 2026-01-14 03:59:17,878 | INFO     | aborting loop
[2026-01-14 04:59:59] 2026-01-14 03:59:18,159 | INFO     | all payload control threads have been joined
[2026-01-14 04:59:59] 2026-01-14 03:59:18,189 | INFO     | all data control threads have been joined
[2026-01-14 04:59:59] 2026-01-14 03:59:18,883 | INFO     | [job] retrieve thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:18,884 | INFO     | [job] queue monitor thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:18,884 | INFO     | [job] job monitor thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:19,164 | INFO     | [payload] control thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:19,195 | INFO     | [data] control thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:19,391 | INFO     | all job control threads have been joined
[2026-01-14 04:59:59] 2026-01-14 03:59:19,417 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:19,884 | INFO     | [data] copytool_out thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:19,889 | INFO     | [data] copytool_in thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:20,152 | INFO     | [payload] validate_post thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:20,197 | INFO     | [job] validate thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:20,235 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:20,258 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:20,351 | INFO     | [payload] failed_post thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:20,397 | INFO     | [job] control thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:21,885 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:28,446 | INFO     | job.realtimelogging is not enabled
[2026-01-14 04:59:59] 2026-01-14 03:59:29,451 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 04:59:59] 2026-01-14 03:59:53,200 | INFO     | [monitor] cgroup control has ended
[2026-01-14 04:59:59] 2026-01-14 03:59:54,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326757078848)>', '<ExcThread(monitor, started 140325867726592)>']
[2026-01-14 04:59:59] 2026-01-14 03:59:55,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 04:59:59] 2026-01-14 03:59:55,076 | INFO     | [monitor] control thread has ended
[2026-01-14 04:59:59] 2026-01-14 03:59:59,301 | INFO     | all workflow threads have been joined
[2026-01-14 04:59:59] 2026-01-14 03:59:59,302 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 04:59:59] 2026-01-14 03:59:59,302 | INFO     | traces error code: 0
[2026-01-14 04:59:59] 2026-01-14 03:59:59,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 04:59:59] 2026-01-14 03:59:59,351 [wrapper] ==== pilot stdout END ====
[2026-01-14 04:59:59] 2026-01-14 03:59:59,354 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 04:59:59] 2026-01-14 03:59:59,356 [wrapper] pilotpid: 3355717
[2026-01-14 04:59:59] 2026-01-14 03:59:59,359 [wrapper] Pilot exit status: 0
[2026-01-14 04:59:59] 2026-01-14 03:59:59,367 [wrapper] pandaids: 6969258293
[2026-01-14 04:59:59] 2026-01-14 03:59:59,384 [wrapper] cleanup supervisor_pilot 3371334 3355718
[2026-01-14 04:59:59] 2026-01-14 03:59:59,387 [wrapper] Test setup, not cleaning
[2026-01-14 04:59:59] 2026-01-14 03:59:59,389 [wrapper] apfmon messages muted
[2026-01-14 04:59:59] 2026-01-14 03:59:59,391 [wrapper] ==== wrapper stdout END ====
[2026-01-14 04:59:59] 2026-01-14 03:59:59,394 [wrapper] ==== wrapper stderr END ====
[2026-01-14 04:59:59]  *** Error codes and diagnostics ***
[2026-01-14 04:59:59]     "exeErrorCode": 0,
[2026-01-14 04:59:59]     "exeErrorDiag": "",
[2026-01-14 04:59:59]     "pilotErrorCode": 0,
[2026-01-14 04:59:59]     "pilotErrorDiag": "",
[2026-01-14 04:59:59]  *** Listing of results directory ***
[2026-01-14 04:59:59] total 736196
[2026-01-14 04:59:59] -rwx------ 1 boinc boinc     36322 Jan 13 22:47 runpilot2-wrapper.sh
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:50 pilot3.tar.gz
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc      5112 Jan 13 22:50 queuedata.json
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc       100 Jan 14 04:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 04:59:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 04:04 run_atlas
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc       105 Jan 14 04:04 job.xml
[2026-01-14 04:59:59] -rw-r--r-- 2 boinc boinc 593953817 Jan 14 04:04 EVNT.32794306._000063.pool.root.1
[2026-01-14 04:59:59] -rw-r--r-- 2 boinc boinc    592393 Jan 14 04:04 input.tar.gz
[2026-01-14 04:59:59] -rw-r--r-- 2 boinc boinc     15847 Jan 14 04:04 start_atlas.sh
[2026-01-14 04:59:59] drwxrwx--x 2 boinc boinc      4096 Jan 14 04:04 shared
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc         0 Jan 14 04:04 boinc_setup_complete
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc      6448 Jan 14 04:04 init_data.xml
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc         0 Jan 14 04:04 boinc_lockfile
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc      2503 Jan 14 04:04 pandaJob.out
[2026-01-14 04:59:59] -rw------- 1 boinc boinc    997226 Jan 14 04:04 agis_schedconf.cvmfs.json
[2026-01-14 04:59:59] -rw------- 1 boinc boinc   1516246 Jan 14 04:04 agis_ddmendpoints.agis.ALL.json
[2026-01-14 04:59:59] drwx------ 5 boinc boinc      4096 Jan 14 04:04 pilot3
[2026-01-14 04:59:59] -rw------- 1 boinc boinc 154521343 Jan 14 04:58 HITS.48215263._001570.pool.root.1
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc       530 Jan 14 04:58 boinc_task_state.xml
[2026-01-14 04:59:59] -rw------- 1 boinc boinc      1017 Jan 14 04:59 memory_monitor_summary.json
[2026-01-14 04:59:59] -rw------- 1 boinc boinc        95 Jan 14 04:59 pilot_heartbeat.json
[2026-01-14 04:59:59] -rw------- 1 boinc boinc    238930 Jan 14 04:59 log.48215263._001570.job.log.tgz.1
[2026-01-14 04:59:59] -rw------- 1 boinc boinc      7746 Jan 14 04:59 heartbeat.json
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc      8192 Jan 14 04:59 boinc_mmap_file
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc        26 Jan 14 04:59 wrapper_checkpoint.txt
[2026-01-14 04:59:59] -rw------- 1 boinc boinc      4628 Jan 14 04:59 pilotlog.txt
[2026-01-14 04:59:59] -rw------- 1 boinc boinc    497518 Jan 14 04:59 log.48215263._001570.job.log.1
[2026-01-14 04:59:59] -rw------- 1 boinc boinc       357 Jan 14 04:59 output.list
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc       620 Jan 14 04:59 runtime_log
[2026-01-14 04:59:59] -rw------- 1 boinc boinc    757760 Jan 14 04:59 result.tar.gz
[2026-01-14 04:59:59] -rw------- 1 boinc boinc       659 Jan 14 04:59 BcyNDmXP1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJNiKDm8hwsUn.diag
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc      8912 Jan 14 04:59 runtime_log.err
[2026-01-14 04:59:59] -rw-r--r-- 1 boinc boinc     13015 Jan 14 04:59 stderr.txt
[2026-01-14 04:59:59] HITS file was successfully produced:
[2026-01-14 04:59:59] -rw------- 1 boinc boinc 154521343 Jan 14 04:58 shared/HITS.pool.root.1
[2026-01-14 04:59:59]  *** Contents of shared directory: ***
[2026-01-14 04:59:59] total 732280
[2026-01-14 04:59:59] -rw-r--r-- 2 boinc boinc 593953817 Jan 14 04:04 ATLAS.root_0
[2026-01-14 04:59:59] -rw-r--r-- 2 boinc boinc    592393 Jan 14 04:04 input.tar.gz
[2026-01-14 04:59:59] -rw-r--r-- 2 boinc boinc     15847 Jan 14 04:04 start_atlas.sh
[2026-01-14 04:59:59] -rw------- 1 boinc boinc 154521343 Jan 14 04:58 HITS.pool.root.1
[2026-01-14 04:59:59] -rw------- 1 boinc boinc    757760 Jan 14 04:59 result.tar.gz
05:00:00 (3351997): run_atlas exited; CPU time 9180.142597
05:00:00 (3351997): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN