Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:35:23 (390757): wrapper (7.7.26015): starting
23:35:23 (390757): wrapper: running run_atlas (--nthreads 3)
[2026-01-18 23:35:23] Arguments: --nthreads 3
[2026-01-18 23:35:23] Threads: 3
[2026-01-18 23:35:23] Checking for CVMFS
[2026-01-18 23:35:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-18 23:35:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-18 23:35:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-18 23:35:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-18 23:35:23] 2.12.7.0 1189665 16266 70500 155293 0 70 4915366 6144001 917 130560 1 10049852 99.920 1093408 1845 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2026-01-18 23:35:23] CVMFS is ok
[2026-01-18 23:35:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-18 23:35:23] Checking for apptainer binary...
[2026-01-18 23:35:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-18 23:35:23] Running /usr/bin/apptainer --version
[2026-01-18 23:35:23] apptainer version 1.4.5
[2026-01-18 23:35:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-18 23:35:24] Beta
[2026-01-18 23:35:24] apptainer works
[2026-01-18 23:35:24] Set ATHENA_PROC_NUMBER=3
[2026-01-18 23:35:24] Set ATHENA_CORE_NUMBER=3
[2026-01-18 23:35:24] Starting ATLAS job with PandaID=6969271403
[2026-01-18 23:35:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-19 01:04:52]  *** The last 200 lines of the pilot log: ***
[2026-01-19 01:04:52]  lfn=log.48215263._006654.job.log.tgz.1
[2026-01-19 01:04:52]  mtime=0
[2026-01-19 01:04:52]  protocol_id=None
[2026-01-19 01:04:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-19 01:04:52]  replicas=None
[2026-01-19 01:04:52]  scope=mc23_13p6TeV
[2026-01-19 01:04:52]  status=None
[2026-01-19 01:04:52]  status_code=0
[2026-01-19 01:04:52]  storage_token=
[2026-01-19 01:04:52]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6969271403/log.48215263._006654.job.log.tgz.1
[2026-01-19 01:04:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/f0/log.48215263._006654.job.log.tgz.1
[2026-01-19 01:04:52]  workdir=None
[2026-01-19 01:04:52] ]
[2026-01-19 01:04:52] 2026-01-19 00:04:18,302 | INFO     | transferring file log.48215263._006654.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6969271403/log.48215263._006654.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-19 01:04:52] 2026-01-19 00:04:18,303 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6969271403/log.48215263._006654.job.log.tgz.1 /var/lib/boinc/slots/1/log.48215263._006654.job
[2026-01-19 01:04:52] 2026-01-19 00:04:18,311 | INFO     | adding to output.list: log.48215263._006654.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/f0/log.48215263._006654.job.log.tg
[2026-01-19 01:04:52] 2026-01-19 00:04:18,311 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-19 01:04:52] 2026-01-19 00:04:18,311 | INFO     | summary of transferred files:
[2026-01-19 01:04:52] 2026-01-19 00:04:18,311 | INFO     |  -- lfn=log.48215263._006654.job.log.tgz.1, status_code=0, status=transferred
[2026-01-19 01:04:52] 2026-01-19 00:04:18,312 | INFO     | stage-out finished correctly
[2026-01-19 01:04:52] 2026-01-19 00:04:18,362 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-19 01:04:52] 2026-01-19 00:04:18,410 | INFO     | job 6969271403 has state=finished
[2026-01-19 01:04:52] 2026-01-19 00:04:18,410 | INFO     | preparing for final server update for job 6969271403 in state='finished'
[2026-01-19 01:04:52] 2026-01-19 00:04:18,410 | INFO     | this job has now completed (state=finished)
[2026-01-19 01:04:52] 2026-01-19 00:04:18,410 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-19 01:04:52] 2026-01-19 00:04:18,410 | INFO     | log transfer has been attempted: DONE
[2026-01-19 01:04:52] 2026-01-19 00:04:18,411 | INFO     | job 6969271403 has finished - writing final server update
[2026-01-19 01:04:52] 2026-01-19 00:04:18,411 | INFO     | total number of processed events: 400 (read)
[2026-01-19 01:04:52] 2026-01-19 00:04:18,411 | INFO     | executing command: lscpu
[2026-01-19 01:04:52] 2026-01-19 00:04:18,422 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-19 01:04:52] 2026-01-19 00:04:19,143 | INFO     | time since job start (5330s) is within the limit (349056.0s)
[2026-01-19 01:04:52] 2026-01-19 00:04:20,234 | WARNING  | process 400888 can no longer be monitored (due to stat problems) - aborting
[2026-01-19 01:04:52] 2026-01-19 00:04:20,234 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6969271403/memory_monitor_summary.json (trf name=prmon)
[2026-01-19 01:04:52] 2026-01-19 00:04:20,310 | INFO     | number of running child processes to parent process 400888: 1
[2026-01-19 01:04:52] 2026-01-19 00:04:20,310 | INFO     | maximum number of monitored processes: 6
[2026-01-19 01:04:52] 2026-01-19 00:04:20,393 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-19 01:04:52] 2026-01-19 00:04:20,394 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3700.6539999999995
[2026-01-19 01:04:52] 2026-01-19 00:04:20,395 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6969271403/memory_monitor_summary.json (trf name=prmon)
[2026-01-19 01:04:52] 2026-01-19 00:04:20,396 | INFO     | extracted standard info from prmon json
[2026-01-19 01:04:52] 2026-01-19 00:04:20,396 | INFO     | extracted standard memory fields from prmon json
[2026-01-19 01:04:52] 2026-01-19 00:04:20,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-19 01:04:52] 2026-01-19 00:04:20,396 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-19 01:04:52] 2026-01-19 00:04:20,396 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-19 01:04:52] 2026-01-19 00:04:20,397 | INFO     | fitting pss+swap vs Time
[2026-01-19 01:04:52] 2026-01-19 00:04:20,398 | INFO     | sum of square deviations: 158737860.0
[2026-01-19 01:04:52] 2026-01-19 00:04:20,398 | INFO     | sum of deviations: -12805452907.499998
[2026-01-19 01:04:52] 2026-01-19 00:04:20,398 | INFO     | mean x: 1768778463.5
[2026-01-19 01:04:52] 2026-01-19 00:04:20,398 | INFO     | mean y: 2447973.6375
[2026-01-19 01:04:52] 2026-01-19 00:04:20,398 | INFO     | intersect: 142690583735.0082
[2026-01-19 01:04:52] 2026-01-19 00:04:20,398 | INFO     | chi2: 0.1687931934785642
[2026-01-19 01:04:52] 2026-01-19 00:04:20,398 | INFO     | current memory leak: -80.67 B/s (using 80 data points, chi2=0.17)
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | could have reported an average CPU frequency of 3700 MHz (6 samples)
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | ..............................
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | . Timing measurements:
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | . get job = 0 s
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | . initial setup = 1 s
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | . payload setup = 3 s
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | . stage-in = 0 s
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | . payload execution = 5308 s
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | . stage-out = 0 s
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | . log creation = 0 s
[2026-01-19 01:04:52] 2026-01-19 00:04:20,399 | INFO     | ..............................
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | 
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | job summary report
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | --------------------------------------------------
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | PanDA job id: 6969271403
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | task id: 48215263
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | errors: (none)
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | pilot state: finished 
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | transexitcode: 0
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | exeerrorcode: 0
[2026-01-19 01:04:52] 2026-01-19 00:04:20,856 | INFO     | exeerrordiag: 
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | exitcode: 0
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | exitmsg: OK
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | cpuconsumptiontime: 15492 s
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | nevents: 400
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | neventsw: 0
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | pid: 400888
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | pgrp: 400888
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | corecount: 3
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | event service: False
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | sizes: {0: 2283718, 1: 2283973, 3: 2284235, 11: 2284263, 5314: 2310843, 5315: 2320025, 5317: 2320163}
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | --------------------------------------------------
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | 
[2026-01-19 01:04:52] 2026-01-19 00:04:20,857 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-01-19 01:04:52] 2026-01-19 00:04:20,866 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,867 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,868 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,868 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,868 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,868 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,868 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-19 01:04:52] 2026-01-19 00:04:20,868 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,868 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-19 01:04:52] 2026-01-19 00:04:20,868 | INFO     | job 6969271403 has completed (purged errors)
[2026-01-19 01:04:52] 2026-01-19 00:04:20,868 | INFO     | overall cleanup function is called
[2026-01-19 01:04:52] 2026-01-19 00:04:21,873 | INFO     | --- collectZombieJob: --- 10, [400888]
[2026-01-19 01:04:52] 2026-01-19 00:04:21,873 | INFO     | zombie collector waiting for pid 400888
[2026-01-19 01:04:52] 2026-01-19 00:04:21,873 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-19 01:04:52] 2026-01-19 00:04:21,873 | INFO     | collected zombie processes
[2026-01-19 01:04:52] 2026-01-19 00:04:21,873 | INFO     | will attempt to kill all subprocesses of pid=400888
[2026-01-19 01:04:52] 2026-01-19 00:04:21,936 | INFO     | process IDs to be killed: [400888] (in reverse order)
[2026-01-19 01:04:52] 2026-01-19 00:04:21,960 | WARNING  | found no corresponding commands to process id(s)
[2026-01-19 01:04:52] 2026-01-19 00:04:21,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-19 01:04:52] 2026-01-19 00:04:21,962 | INFO     | did not find any defunct processes belonging to 400888
[2026-01-19 01:04:52] 2026-01-19 00:04:21,964 | INFO     | did not find any defunct processes belonging to 400888
[2026-01-19 01:04:52] 2026-01-19 00:04:21,964 | INFO     | ready for new job
[2026-01-19 01:04:52] 2026-01-19 00:04:21,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-19 01:04:52] 2026-01-19 00:04:21,965 | INFO     | ***************************************
[2026-01-19 01:04:52] 2026-01-19 00:04:21,965 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-19 01:04:52] 2026-01-19 00:04:21,965 | INFO     | ***************************************
[2026-01-19 01:04:52] 2026-01-19 00:04:21,966 | INFO     | 
[2026-01-19 01:04:52] 2026-01-19 00:04:21,966 | INFO     | architecture information:
[2026-01-19 01:04:52] 2026-01-19 00:04:21,966 | INFO     | executing command: cat /etc/os-release
[2026-01-19 01:04:52] 2026-01-19 00:04:21,973 | INFO     | cat /etc/os-release:
[2026-01-19 01:04:52] NAME="CentOS Linux"
[2026-01-19 01:04:52] VERSION="7 (Core)"
[2026-01-19 01:04:52] ID="centos"
[2026-01-19 01:04:52] ID_LIKE="rhel fedora"
[2026-01-19 01:04:52] VERSION_ID="7"
[2026-01-19 01:04:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-19 01:04:52] ANSI_COLOR="0;31"
[2026-01-19 01:04:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-19 01:04:52] HOME_URL="https://www.centos.org/"
[2026-01-19 01:04:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-19 01:04:52] 
[2026-01-19 01:04:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-19 01:04:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-19 01:04:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-19 01:04:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-19 01:04:52] 
[2026-01-19 01:04:52] 2026-01-19 00:04:21,973 | INFO     | ***************************************
[2026-01-19 01:04:52] 2026-01-19 00:04:22,476 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-01-19 01:04:52] 2026-01-19 00:04:22,483 | INFO     | sufficient remaining disk space (260952817664 B)
[2026-01-19 01:04:52] 2026-01-19 00:04:22,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-19 01:04:52] 2026-01-19 00:04:22,483 | INFO     | current server update state: UPDATING_FINAL
[2026-01-19 01:04:52] 2026-01-19 00:04:22,483 | INFO     | update_server=False
[2026-01-19 01:04:52] 2026-01-19 00:04:22,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-19 01:04:52] 2026-01-19 00:04:22,813 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-19 01:04:52] 2026-01-19 00:04:22,813 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-19 01:04:52] 2026-01-19 00:04:22,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-19 01:04:52] 2026-01-19 00:04:22,813 | INFO     | will abort loop
[2026-01-19 01:04:52] 2026-01-19 00:04:23,150 | INFO     | all payload control threads have been joined
[2026-01-19 01:04:52] 2026-01-19 00:04:23,164 | INFO     | all job control threads have been joined
[2026-01-19 01:04:52] 2026-01-19 00:04:23,456 | INFO     | all data control threads have been joined
[2026-01-19 01:04:52] 2026-01-19 00:04:23,487 | INFO     | [job] retrieve thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:23,564 | INFO     | [payload] validate_post thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:23,577 | INFO     | [job] validate thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:23,781 | INFO     | [job] create_data_payload thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:23,790 | INFO     | [payload] validate_pre thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:23,818 | INFO     | [job] job monitor thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:23,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-19 01:04:52] 2026-01-19 00:04:24,005 | INFO     | [payload] failed_post thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:24,153 | INFO     | [payload] control thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:24,166 | INFO     | [job] control thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:24,397 | INFO     | [data] copytool_in thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:24,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-19 01:04:52] 2026-01-19 00:04:24,460 | INFO     | [data] control thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:24,708 | INFO     | [payload] execute_payloads thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:25,456 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-19 01:04:52] 2026-01-19 00:04:25,874 | INFO     | [data] copytool_out thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:26,462 | INFO     | [job] queue monitor thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:28,420 | INFO     | [data] queue_monitor thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:33,357 | INFO     | job.realtimelogging is not enabled
[2026-01-19 01:04:52] 2026-01-19 00:04:34,362 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-19 01:04:52] 2026-01-19 00:04:37,683 | INFO     | [monitor] cgroup control has ended
[2026-01-19 01:04:52] 2026-01-19 00:04:38,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636352173888)>', '<ExcThread(monitor, started 140635843569408)>']
[2026-01-19 01:04:52] 2026-01-19 00:04:43,084 | INFO     | all workflow threads have been joined
[2026-01-19 01:04:52] 2026-01-19 00:04:43,084 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-19 01:04:52] 2026-01-19 00:04:43,084 | INFO     | traces error code: 0
[2026-01-19 01:04:52] 2026-01-19 00:04:43,084 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-19 01:04:52] 2026-01-19 00:04:52,306 | INFO     | PID=394468 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-19 01:04:52] 2026-01-19 00:04:52,306 | INFO     | .. there are 2 such processes running
[2026-01-19 01:04:52] 2026-01-19 00:04:52,306 | INFO     | found 0 job(s) in 20 queues
[2026-01-19 01:04:52] 2026-01-19 00:04:52,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-19 01:04:52] 2026-01-19 00:04:52,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-19 01:04:52] 2026-01-19 00:04:52,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-19 01:04:52] 2026-01-19 00:04:52,307 | INFO     | [monitor] control thread has ended
[2026-01-19 01:04:52] 2026-01-19 00:04:52,366 [wrapper] ==== pilot stdout END ====
[2026-01-19 01:04:52] 2026-01-19 00:04:52,368 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-19 01:04:52] 2026-01-19 00:04:52,369 [wrapper] pilotpid: 394468
[2026-01-19 01:04:52] 2026-01-19 00:04:52,370 [wrapper] Pilot exit status: 0
[2026-01-19 01:04:52] 2026-01-19 00:04:52,376 [wrapper] pandaids: 6969271403
[2026-01-19 01:04:52] 2026-01-19 00:04:52,391 [wrapper] cleanup supervisor_pilot  454443 394469
[2026-01-19 01:04:52] 2026-01-19 00:04:52,392 [wrapper] Test setup, not cleaning
[2026-01-19 01:04:52] 2026-01-19 00:04:52,394 [wrapper] apfmon messages muted
[2026-01-19 01:04:52] 2026-01-19 00:04:52,395 [wrapper] ==== wrapper stdout END ====
[2026-01-19 01:04:52] 2026-01-19 00:04:52,397 [wrapper] ==== wrapper stderr END ====
[2026-01-19 01:04:52]  *** Error codes and diagnostics ***
[2026-01-19 01:04:52]     "exeErrorCode": 0,
[2026-01-19 01:04:52]     "exeErrorDiag": "",
[2026-01-19 01:04:52]     "pilotErrorCode": 0,
[2026-01-19 01:04:52]     "pilotErrorDiag": "",
[2026-01-19 01:04:52]  *** Listing of results directory ***
[2026-01-19 01:04:52] insgesamt 732204
[2026-01-19 01:04:52] -rwx------ 1 boinc boinc     36322 13. Jan 23:02 runpilot2-wrapper.sh
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc    579449 13. Jan 23:12 pilot3.tar.gz
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc      5112 13. Jan 23:20 queuedata.json
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc       100 18. Jan 23:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-19 01:04:52] -rwxr-xr-x 1 boinc boinc      7986 18. Jan 23:35 run_atlas
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc       105 18. Jan 23:35 job.xml
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc      6741 18. Jan 23:35 init_data.xml
[2026-01-19 01:04:52] -rw-r--r-- 2 boinc boinc 597506558 18. Jan 23:35 EVNT.32794306._000267.pool.root.1
[2026-01-19 01:04:52] drwxrwx--x 2 boinc boinc      4096 18. Jan 23:35 shared
[2026-01-19 01:04:52] -rw-r--r-- 2 boinc boinc    592399 18. Jan 23:35 input.tar.gz
[2026-01-19 01:04:52] -rw-r--r-- 2 boinc boinc     15847 18. Jan 23:35 start_atlas.sh
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc         0 18. Jan 23:35 boinc_lockfile
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc      2505 18. Jan 23:35 pandaJob.out
[2026-01-19 01:04:52] -rw------- 1 boinc boinc        52 18. Jan 23:35 setup.sh.local
[2026-01-19 01:04:52] -rw------- 1 boinc boinc   1004117 18. Jan 23:35 agis_schedconf.cvmfs.json
[2026-01-19 01:04:52] -rw------- 1 boinc boinc   1516246 18. Jan 23:35 agis_ddmendpoints.agis.ALL.json
[2026-01-19 01:04:52] drwx------ 5 boinc boinc      4096 18. Jan 23:35 pilot3
[2026-01-19 01:04:52] -rw------- 1 boinc boinc 146261048 19. Jan 01:03 HITS.48215263._006654.pool.root.1
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc       530 19. Jan 01:03 boinc_task_state.xml
[2026-01-19 01:04:52] -rw------- 1 boinc boinc        95 19. Jan 01:04 pilot_heartbeat.json
[2026-01-19 01:04:52] -rw------- 1 boinc boinc      1019 19. Jan 01:04 memory_monitor_summary.json
[2026-01-19 01:04:52] -rw------- 1 boinc boinc    247704 19. Jan 01:04 log.48215263._006654.job.log.tgz.1
[2026-01-19 01:04:52] -rw------- 1 boinc boinc      7749 19. Jan 01:04 heartbeat.json
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc      8192 19. Jan 01:04 boinc_mmap_file
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc        27 19. Jan 01:04 wrapper_checkpoint.txt
[2026-01-19 01:04:52] -rw------- 1 boinc boinc       821 19. Jan 01:04 pilotlog.txt
[2026-01-19 01:04:52] -rw------- 1 boinc boinc    790637 19. Jan 01:04 log.48215263._006654.job.log.1
[2026-01-19 01:04:52] -rw------- 1 boinc boinc       357 19. Jan 01:04 output.list
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc       620 19. Jan 01:04 runtime_log
[2026-01-19 01:04:52] -rw------- 1 boinc boinc   1054720 19. Jan 01:04 result.tar.gz
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc      9259 19. Jan 01:04 runtime_log.err
[2026-01-19 01:04:52] -rw------- 1 boinc boinc       639 19. Jan 01:04 L6MMDm8d1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1EpKDmjWJGen.diag
[2026-01-19 01:04:52] -rw-r--r-- 1 boinc boinc     21312 19. Jan 01:04 stderr.txt
[2026-01-19 01:04:52] HITS file was successfully produced:
[2026-01-19 01:04:52] -rw------- 1 boinc boinc 146261048 19. Jan 01:03 shared/HITS.pool.root.1
[2026-01-19 01:04:52]  *** Contents of shared directory: ***
[2026-01-19 01:04:52] insgesamt 727976
[2026-01-19 01:04:52] -rw-r--r-- 2 boinc boinc 597506558 18. Jan 23:35 ATLAS.root_0
[2026-01-19 01:04:52] -rw-r--r-- 2 boinc boinc    592399 18. Jan 23:35 input.tar.gz
[2026-01-19 01:04:52] -rw-r--r-- 2 boinc boinc     15847 18. Jan 23:35 start_atlas.sh
[2026-01-19 01:04:52] -rw------- 1 boinc boinc 146261048 19. Jan 01:03 HITS.pool.root.1
[2026-01-19 01:04:52] -rw------- 1 boinc boinc   1054720 19. Jan 01:04 result.tar.gz
01:04:54 (390757): run_atlas exited; CPU time 15551.976602
01:04:54 (390757): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN