Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:37:27 (3999): wrapper (7.7.26015): starting
07:37:27 (3999): wrapper: running run_atlas (--nthreads 8)
[2026-01-14 07:37:27] Arguments: --nthreads 8
[2026-01-14 07:37:27] Threads: 8
[2026-01-14 07:37:27] Checking for CVMFS
[2026-01-14 07:37:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 07:37:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 07:37:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 07:37:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 07:37:27] 2.11.2.0 31778 10521 103088 155121 2 415 20474719 25165824 656 130560 0 4560027 99.802 1301356 1260 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-14 07:37:27] CVMFS is ok
[2026-01-14 07:37:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 07:37:27] Checking for apptainer binary...
[2026-01-14 07:37:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 07:37:27] Running /usr/bin/apptainer --version
[2026-01-14 07:37:27] apptainer version 1.3.2-1.el7
[2026-01-14 07:37:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 07:37:29] cg-vwn373.simple-grid.lan
[2026-01-14 07:37:29] apptainer works
[2026-01-14 07:37:29] Set ATHENA_PROC_NUMBER=8
[2026-01-14 07:37:29] Set ATHENA_CORE_NUMBER=8
[2026-01-14 07:37:29] Starting ATLAS job with PandaID=6969271899
[2026-01-14 07:37:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 09:13:04]  *** The last 200 lines of the pilot log: ***
[2026-01-14 09:13:04]  workdir=None
[2026-01-14 09:13:04] ]
[2026-01-14 09:13:04] 2026-01-14 08:11:59,755 | INFO     | transferring file log.48215263._006880.job.log.tgz.1 from /var/lib/boinc/slots/14/PanDA_Pilot-6969271899/log.48215263._006880.job.log.tgz.1 to /var/lib/boinc/slots
[2026-01-14 09:13:04] 2026-01-14 08:11:59,755 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/14/PanDA_Pilot-6969271899/log.48215263._006880.job.log.tgz.1 /var/lib/boinc/slots/14/log.48215263._006880.j
[2026-01-14 09:13:04] 2026-01-14 08:11:59,807 | INFO     | adding to output.list: log.48215263._006880.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/ba/log.48215263._006880.job.log.tg
[2026-01-14 09:13:04] 2026-01-14 08:11:59,807 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 09:13:04] 2026-01-14 08:11:59,808 | INFO     | summary of transferred files:
[2026-01-14 09:13:04] 2026-01-14 08:11:59,808 | INFO     |  -- lfn=log.48215263._006880.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 09:13:04] 2026-01-14 08:11:59,808 | INFO     | stage-out finished correctly
[2026-01-14 09:13:04] 2026-01-14 08:12:00,142 | INFO     | time since job start (5651s) is within the limit (349056.0s)
[2026-01-14 09:13:04] 2026-01-14 08:12:00,649 | INFO     | monitor loop #401: job 0:6969271899 is in state 'finished'
[2026-01-14 09:13:04] 2026-01-14 08:12:00,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 09:13:04] 2026-01-14 08:12:01,247 | INFO     | PID=7733 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-14 09:13:04] 2026-01-14 08:12:01,247 | INFO     | .. there are 4 such processes running
[2026-01-14 09:13:04] 2026-01-14 08:12:02,248 | INFO     | time since job start (5653s) is within the limit (349056.0s)
[2026-01-14 09:13:04] 2026-01-14 08:12:02,766 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 09:13:04] 2026-01-14 08:12:03,153 | INFO     | monitor loop #402: job 0:6969271899 is in state 'finished'
[2026-01-14 09:13:04] 2026-01-14 08:12:03,153 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 09:13:04] 2026-01-14 08:12:04,254 | INFO     | time since job start (5655s) is within the limit (349056.0s)
[2026-01-14 09:13:04] 2026-01-14 08:12:04,435 | INFO     | job 6969271899 has state=finished
[2026-01-14 09:13:04] 2026-01-14 08:12:04,435 | INFO     | preparing for final server update for job 6969271899 in state='finished'
[2026-01-14 09:13:04] 2026-01-14 08:12:04,436 | INFO     | this job has now completed (state=finished)
[2026-01-14 09:13:04] 2026-01-14 08:12:04,436 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 09:13:04] 2026-01-14 08:12:04,436 | INFO     | log transfer has been attempted: DONE
[2026-01-14 09:13:04] 2026-01-14 08:12:04,436 | INFO     | job 6969271899 has finished - writing final server update
[2026-01-14 09:13:04] 2026-01-14 08:12:04,437 | INFO     | total number of processed events: 400 (read)
[2026-01-14 09:13:04] 2026-01-14 08:12:04,438 | INFO     | executing command: lscpu
[2026-01-14 09:13:04] 2026-01-14 08:12:04,593 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 09:13:04] 2026-01-14 08:12:05,656 | INFO     | monitor loop #403: job 0:6969271899 is in state 'finished'
[2026-01-14 09:13:04] 2026-01-14 08:12:05,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 09:13:04] 2026-01-14 08:12:06,260 | INFO     | time since job start (5657s) is within the limit (349056.0s)
[2026-01-14 09:13:04] 2026-01-14 08:12:08,159 | INFO     | monitor loop #404: job 0:6969271899 is in state 'finished'
[2026-01-14 09:13:04] 2026-01-14 08:12:08,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 09:13:04] 2026-01-14 08:12:08,266 | INFO     | time since job start (5659s) is within the limit (349056.0s)
[2026-01-14 09:13:04] 2026-01-14 08:12:10,271 | INFO     | time since job start (5661s) is within the limit (349056.0s)
[2026-01-14 09:13:04] 2026-01-14 08:12:10,662 | INFO     | monitor loop #405: job 0:6969271899 is in state 'finished'
[2026-01-14 09:13:04] 2026-01-14 08:12:10,663 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 09:13:04] 2026-01-14 08:12:11,054 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 09:13:04] 2026-01-14 08:12:11,056 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-14 09:13:04] 2026-01-14 08:12:11,058 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6969271899/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 09:13:04] 2026-01-14 08:12:11,059 | INFO     | extracted standard info from prmon json
[2026-01-14 09:13:04] 2026-01-14 08:12:11,059 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 09:13:04] 2026-01-14 08:12:11,059 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 09:13:04] 2026-01-14 08:12:11,059 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 09:13:04] 2026-01-14 08:12:11,059 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 09:13:04] 2026-01-14 08:12:11,062 | INFO     | fitting pss+swap vs Time
[2026-01-14 09:13:04] 2026-01-14 08:12:11,062 | INFO     | sum of square deviations: 190403570.0
[2026-01-14 09:13:04] 2026-01-14 08:12:11,063 | INFO     | sum of deviations: -9451643779.999998
[2026-01-14 09:13:04] 2026-01-14 08:12:11,063 | INFO     | mean x: 1768375575.0
[2026-01-14 09:13:04] 2026-01-14 08:12:11,063 | INFO     | mean y: 2595472.094117647
[2026-01-14 09:13:04] 2026-01-14 08:12:11,063 | INFO     | intersect: 87784857139.5233
[2026-01-14 09:13:04] 2026-01-14 08:12:11,064 | INFO     | chi2: 0.09179723521258065
[2026-01-14 09:13:04] 2026-01-14 08:12:11,064 | INFO     | current memory leak: -49.64 B/s (using 85 data points, chi2=0.09)
[2026-01-14 09:13:04] 2026-01-14 08:12:11,064 | INFO     | could have reported an average CPU frequency of 1999 MHz (6 samples)
[2026-01-14 09:13:04] 2026-01-14 08:12:11,065 | INFO     | ..............................
[2026-01-14 09:13:04] 2026-01-14 08:12:11,065 | INFO     | . Timing measurements:
[2026-01-14 09:13:04] 2026-01-14 08:12:11,065 | INFO     | . get job = 0 s
[2026-01-14 09:13:04] 2026-01-14 08:12:11,065 | INFO     | . initial setup = 2 s
[2026-01-14 09:13:04] 2026-01-14 08:12:11,065 | INFO     | . payload setup = 10 s
[2026-01-14 09:13:04] 2026-01-14 08:12:11,065 | INFO     | . stage-in = 0 s
[2026-01-14 09:13:04] 2026-01-14 08:12:11,065 | INFO     | . payload execution = 5617 s
[2026-01-14 09:13:04] 2026-01-14 08:12:11,065 | INFO     | . stage-out = 0 s
[2026-01-14 09:13:04] 2026-01-14 08:12:11,065 | INFO     | . log creation = 0 s
[2026-01-14 09:13:04] 2026-01-14 08:12:11,066 | INFO     | ..............................
[2026-01-14 09:13:04] 2026-01-14 08:12:11,624 | INFO     | 
[2026-01-14 09:13:04] 2026-01-14 08:12:11,624 | INFO     | job summary report
[2026-01-14 09:13:04] 2026-01-14 08:12:11,624 | INFO     | --------------------------------------------------
[2026-01-14 09:13:04] 2026-01-14 08:12:11,624 | INFO     | PanDA job id: 6969271899
[2026-01-14 09:13:04] 2026-01-14 08:12:11,624 | INFO     | task id: 48215263
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | errors: (none)
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | pilot state: finished 
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | transexitcode: 0
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | exeerrorcode: 0
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | exeerrordiag: 
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | exitcode: 0
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | exitmsg: OK
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | cpuconsumptiontime: 37128 s
[2026-01-14 09:13:04] 2026-01-14 08:12:11,625 | INFO     | nevents: 400
[2026-01-14 09:13:04] 2026-01-14 08:12:11,626 | INFO     | neventsw: 0
[2026-01-14 09:13:04] 2026-01-14 08:12:11,626 | INFO     | pid: 14285
[2026-01-14 09:13:04] 2026-01-14 08:12:11,626 | INFO     | pgrp: 14285
[2026-01-14 09:13:04] 2026-01-14 08:12:11,626 | INFO     | corecount: 8
[2026-01-14 09:13:04] 2026-01-14 08:12:11,626 | INFO     | event service: False
[2026-01-14 09:13:04] 2026-01-14 08:12:11,626 | INFO     | sizes: {0: 2283774, 1: 2283973, 8: 2284235, 11: 2284263, 5631: 2310750, 5632: 2319750, 5635: 2319934, 5644: 2320128}
[2026-01-14 09:13:04] 2026-01-14 08:12:11,626 | INFO     | --------------------------------------------------
[2026-01-14 09:13:04] 2026-01-14 08:12:11,626 | INFO     | 
[2026-01-14 09:13:04] 2026-01-14 08:12:11,627 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2026-01-14 09:13:04] 2026-01-14 08:12:11,665 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,665 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,665 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,665 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,666 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,666 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,667 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 09:13:04] 2026-01-14 08:12:11,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,667 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 09:13:04] 2026-01-14 08:12:11,667 | INFO     | job 6969271899 has completed (purged errors)
[2026-01-14 09:13:04] 2026-01-14 08:12:11,668 | INFO     | overall cleanup function is called
[2026-01-14 09:13:04] 2026-01-14 08:12:12,675 | INFO     | --- collectZombieJob: --- 10, [14285]
[2026-01-14 09:13:04] 2026-01-14 08:12:12,676 | INFO     | zombie collector waiting for pid 14285
[2026-01-14 09:13:04] 2026-01-14 08:12:12,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 09:13:04] 2026-01-14 08:12:12,676 | INFO     | collected zombie processes
[2026-01-14 09:13:04] 2026-01-14 08:12:12,676 | INFO     | will attempt to kill all subprocesses of pid=14285
[2026-01-14 09:13:04] 2026-01-14 08:12:12,753 | INFO     | process IDs to be killed: [14285] (in reverse order)
[2026-01-14 09:13:04] 2026-01-14 08:12:12,812 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 09:13:04] 2026-01-14 08:12:12,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 09:13:04] 2026-01-14 08:12:12,815 | INFO     | did not find any defunct processes belonging to 14285
[2026-01-14 09:13:04] 2026-01-14 08:12:12,817 | INFO     | did not find any defunct processes belonging to 14285
[2026-01-14 09:13:04] 2026-01-14 08:12:12,817 | INFO     | ready for new job
[2026-01-14 09:13:04] 2026-01-14 08:12:12,817 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 09:13:04] 2026-01-14 08:12:12,819 | INFO     | ***************************************
[2026-01-14 09:13:04] 2026-01-14 08:12:12,819 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 09:13:04] 2026-01-14 08:12:12,819 | INFO     | ***************************************
[2026-01-14 09:13:04] 2026-01-14 08:12:12,819 | INFO     | 
[2026-01-14 09:13:04] 2026-01-14 08:12:12,820 | INFO     | pilot is running in a VM
[2026-01-14 09:13:04] 2026-01-14 08:12:12,820 | INFO     | architecture information:
[2026-01-14 09:13:04] 2026-01-14 08:12:12,821 | INFO     | executing command: cat /etc/os-release
[2026-01-14 09:13:04] 2026-01-14 08:12:12,838 | INFO     | cat /etc/os-release:
[2026-01-14 09:13:04] NAME="CentOS Linux"
[2026-01-14 09:13:04] VERSION="7 (Core)"
[2026-01-14 09:13:04] ID="centos"
[2026-01-14 09:13:04] ID_LIKE="rhel fedora"
[2026-01-14 09:13:04] VERSION_ID="7"
[2026-01-14 09:13:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 09:13:04] ANSI_COLOR="0;31"
[2026-01-14 09:13:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 09:13:04] HOME_URL="https://www.centos.org/"
[2026-01-14 09:13:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 09:13:04] 
[2026-01-14 09:13:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 09:13:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 09:13:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 09:13:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 09:13:04] 
[2026-01-14 09:13:04] 2026-01-14 08:12:12,839 | INFO     | ***************************************
[2026-01-14 09:13:04] 2026-01-14 08:12:13,342 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2026-01-14 09:13:04] 2026-01-14 08:12:13,363 | INFO     | sufficient remaining disk space (494164508672 B)
[2026-01-14 09:13:04] 2026-01-14 08:12:13,363 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 09:13:04] 2026-01-14 08:12:13,363 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 09:13:04] 2026-01-14 08:12:13,364 | INFO     | update_server=False
[2026-01-14 09:13:04] 2026-01-14 08:12:13,364 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 09:13:04] 2026-01-14 08:12:13,364 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 09:13:04] 2026-01-14 08:12:13,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 09:13:04] 2026-01-14 08:12:14,019 | INFO     | all data control threads have been joined
[2026-01-14 09:13:04] 2026-01-14 08:12:14,121 | INFO     | all payload control threads have been joined
[2026-01-14 09:13:04] 2026-01-14 08:12:14,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 09:13:04] 2026-01-14 08:12:14,167 | INFO     | aborting loop
[2026-01-14 09:13:04] 2026-01-14 08:12:14,277 | INFO     | all job control threads have been joined
[2026-01-14 09:13:04] 2026-01-14 08:12:14,365 | INFO     | [job] retrieve thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:14,435 | INFO     | [payload] failed_post thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:14,792 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:14,796 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,024 | INFO     | [data] control thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,116 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,127 | INFO     | [payload] control thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,173 | INFO     | [job] job monitor thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,283 | INFO     | [job] control thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,300 | INFO     | [job] validate thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,370 | INFO     | [data] copytool_out thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,480 | INFO     | [data] copytool_in thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,618 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:15,850 | INFO     | [payload] validate_post thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:16,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 09:13:04] 2026-01-14 08:12:17,198 | INFO     | [job] queue monitor thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:17,400 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 09:13:04] 2026-01-14 08:12:43,389 | INFO     | PID=7733 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-14 09:13:04] 2026-01-14 08:12:43,389 | INFO     | .. there are 4 such processes running
[2026-01-14 09:13:04] 2026-01-14 08:12:43,390 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 09:13:04] 2026-01-14 08:12:43,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 09:13:04] 2026-01-14 08:12:43,390 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 09:13:04] 2026-01-14 08:12:58,496 | INFO     | [monitor] cgroup control has ended
[2026-01-14 09:13:04] 2026-01-14 08:12:58,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140680318732096)>', '<ExcThread(monitor, started 140679858591488)>']
[2026-01-14 09:13:04] 2026-01-14 08:12:59,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 09:13:04] 2026-01-14 08:12:59,474 | INFO     | [monitor] control thread has ended
[2026-01-14 09:13:04] 2026-01-14 08:13:03,964 | INFO     | all workflow threads have been joined
[2026-01-14 09:13:04] 2026-01-14 08:13:03,964 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 09:13:04] 2026-01-14 08:13:03,964 | INFO     | traces error code: 0
[2026-01-14 09:13:04] 2026-01-14 08:13:03,965 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 09:13:04] 2026-01-14 08:13:04,124 [wrapper] ==== pilot stdout END ====
[2026-01-14 09:13:04] 2026-01-14 08:13:04,130 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 09:13:04] 2026-01-14 08:13:04,133 [wrapper] pilotpid: 7733
[2026-01-14 09:13:04] 2026-01-14 08:13:04,138 [wrapper] Pilot exit status: 0
[2026-01-14 09:13:04] 2026-01-14 08:13:04,166 [wrapper] pandaids: 6969271899
[2026-01-14 09:13:04] 2026-01-14 08:13:04,207 [wrapper] cleanup supervisor_pilot 18540 7734
[2026-01-14 09:13:04] 2026-01-14 08:13:04,219 [wrapper] Test setup, not cleaning
[2026-01-14 09:13:04] 2026-01-14 08:13:04,234 [wrapper] apfmon messages muted
[2026-01-14 09:13:04] 2026-01-14 08:13:04,239 [wrapper] ==== wrapper stdout END ====
[2026-01-14 09:13:04] 2026-01-14 08:13:04,244 [wrapper] ==== wrapper stderr END ====
[2026-01-14 09:13:04]  *** Error codes and diagnostics ***
[2026-01-14 09:13:04]     "exeErrorCode": 0,
[2026-01-14 09:13:04]     "exeErrorDiag": "",
[2026-01-14 09:13:04]     "pilotErrorCode": 0,
[2026-01-14 09:13:04]     "pilotErrorDiag": "",
[2026-01-14 09:13:04]  *** Listing of results directory ***
[2026-01-14 09:13:04] total 743188
[2026-01-14 09:13:04] -rwx------. 1 boinc boinc     36322 Jan 13 23:02 runpilot2-wrapper.sh
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc    579449 Jan 13 23:12 pilot3.tar.gz
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc      5112 Jan 13 23:16 queuedata.json
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc       100 Jan 14 07:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 09:13:04] -rwxr-xr-x. 1 boinc boinc      7986 Jan 14 07:37 run_atlas
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc       105 Jan 14 07:37 job.xml
[2026-01-14 09:13:04] -rw-r--r--. 2 boinc boinc 600452695 Jan 14 07:37 EVNT.32794306._000276.pool.root.1
[2026-01-14 09:13:04] -rw-r--r--. 2 boinc boinc     15847 Jan 14 07:37 start_atlas.sh
[2026-01-14 09:13:04] drwxrwx--x. 2 boinc boinc        68 Jan 14 07:37 shared
[2026-01-14 09:13:04] -rw-r--r--. 2 boinc boinc    592393 Jan 14 07:37 input.tar.gz
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc      6392 Jan 14 07:37 init_data.xml
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc         0 Jan 14 07:37 boinc_lockfile
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc      2504 Jan 14 07:37 pandaJob.out
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc    997218 Jan 14 07:37 agis_schedconf.cvmfs.json
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc   1516246 Jan 14 07:37 agis_ddmendpoints.agis.ALL.json
[2026-01-14 09:13:04] drwx------. 5 boinc boinc      4096 Jan 14 07:37 pilot3
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc 154392703 Jan 14 09:11 HITS.48215263._006880.pool.root.1
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc       530 Jan 14 09:11 boinc_task_state.xml
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc      1020 Jan 14 09:11 memory_monitor_summary.json
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc    330113 Jan 14 09:11 log.48215263._006880.job.log.tgz.1
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc      7778 Jan 14 09:12 heartbeat.json
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc        95 Jan 14 09:12 pilot_heartbeat.json
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc      8192 Jan 14 09:13 boinc_mmap_file
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc        27 Jan 14 09:13 wrapper_checkpoint.txt
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc      4884 Jan 14 09:13 pilotlog.txt
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc    805921 Jan 14 09:13 log.48215263._006880.job.log.1
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc       357 Jan 14 09:13 output.list
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc       620 Jan 14 09:13 runtime_log
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc   1157120 Jan 14 09:13 result.tar.gz
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc      8832 Jan 14 09:13 runtime_log.err
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc       652 Jan 14 09:13 EoSLDm9d1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmB0iKDmwHUFSm.diag
[2026-01-14 09:13:04] -rw-r--r--. 1 boinc boinc     22063 Jan 14 09:13 stderr.txt
[2026-01-14 09:13:04] HITS file was successfully produced:
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc 154392703 Jan 14 09:11 shared/HITS.pool.root.1
[2026-01-14 09:13:04]  *** Contents of shared directory: ***
[2026-01-14 09:13:04] total 738884
[2026-01-14 09:13:04] -rw-r--r--. 2 boinc boinc 600452695 Jan 14 07:37 ATLAS.root_0
[2026-01-14 09:13:04] -rw-r--r--. 2 boinc boinc     15847 Jan 14 07:37 start_atlas.sh
[2026-01-14 09:13:04] -rw-r--r--. 2 boinc boinc    592393 Jan 14 07:37 input.tar.gz
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc 154392703 Jan 14 09:11 HITS.pool.root.1
[2026-01-14 09:13:04] -rw-------. 1 boinc boinc   1157120 Jan 14 09:13 result.tar.gz
09:13:05 (3999): run_atlas exited; CPU time 37174.309619
09:13:05 (3999): called boinc_finish(0)

</stderr_txt>
]]>

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