Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:13:23 (4141412): wrapper (7.7.26015): starting
02:13:23 (4141412): wrapper: running run_atlas (--nthreads 2)
[2026-01-14 02:13:23] Arguments: --nthreads 2
[2026-01-14 02:13:23] Threads: 2
[2026-01-14 02:13:23] Checking for CVMFS
[2026-01-14 02:13:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 02:13:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 02:13:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 02:13:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 02:13:24] 2.9.2.0 4141607 0 30032 155113 3 1 19715308 36864000 0 130560 0 0 0.000 1335 26700 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 02:13:24] CVMFS is ok
[2026-01-14 02:13:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 02:13:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 02:13:24] Further information can be found at the LHC@home message board.
[2026-01-14 02:13:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 02:13:24] Checking for apptainer binary...
[2026-01-14 02:13:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 02:13:24] Running /usr/bin/apptainer --version
[2026-01-14 02:13:24] apptainer version 1.4.1-1.1
[2026-01-14 02:13:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 02:13:24] thA337
[2026-01-14 02:13:24] apptainer works
[2026-01-14 02:13:24] Set ATHENA_PROC_NUMBER=2
[2026-01-14 02:13:24] Set ATHENA_CORE_NUMBER=2
[2026-01-14 02:13:24] Starting ATLAS job with PandaID=6969268665
[2026-01-14 02:13:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 03:34:50]  *** The last 200 lines of the pilot log: ***
[2026-01-14 03:34:50] 2026-01-14 02:34:15,357 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 03:34:50] 2026-01-14 02:34:15,357 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 03:34:50] 2026-01-14 02:34:15,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 03:34:50] 2026-01-14 02:34:15,357 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 03:34:50] 2026-01-14 02:34:15,357 | INFO     | job 6969268665 has completed (purged errors)
[2026-01-14 03:34:50] 2026-01-14 02:34:15,357 | INFO     | overall cleanup function is called
[2026-01-14 03:34:50] 2026-01-14 02:34:16,364 | INFO     | --- collectZombieJob: --- 10, [4152091]
[2026-01-14 03:34:50] 2026-01-14 02:34:16,364 | INFO     | zombie collector waiting for pid 4152091
[2026-01-14 03:34:50] 2026-01-14 02:34:16,364 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 03:34:50] 2026-01-14 02:34:16,364 | INFO     | collected zombie processes
[2026-01-14 03:34:50] 2026-01-14 02:34:16,365 | INFO     | will attempt to kill all subprocesses of pid=4152091
[2026-01-14 03:34:50] 2026-01-14 02:34:16,397 | INFO     | process IDs to be killed: [4152091] (in reverse order)
[2026-01-14 03:34:50] 2026-01-14 02:34:16,418 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 03:34:50] 2026-01-14 02:34:16,418 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 03:34:50] 2026-01-14 02:34:16,419 | INFO     | did not find any defunct processes belonging to 4152091
[2026-01-14 03:34:50] 2026-01-14 02:34:16,420 | INFO     | did not find any defunct processes belonging to 4152091
[2026-01-14 03:34:50] 2026-01-14 02:34:16,420 | INFO     | ready for new job
[2026-01-14 03:34:50] 2026-01-14 02:34:16,420 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 03:34:50] 2026-01-14 02:34:16,420 | INFO     | ***************************************
[2026-01-14 03:34:50] 2026-01-14 02:34:16,420 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 03:34:50] 2026-01-14 02:34:16,420 | INFO     | ***************************************
[2026-01-14 03:34:50] 2026-01-14 02:34:16,420 | INFO     | 
[2026-01-14 03:34:50] 2026-01-14 02:34:16,420 | INFO     | architecture information:
[2026-01-14 03:34:50] 2026-01-14 02:34:16,421 | INFO     | executing command: cat /etc/os-release
[2026-01-14 03:34:50] 2026-01-14 02:34:16,428 | INFO     | cat /etc/os-release:
[2026-01-14 03:34:50] NAME="CentOS Linux"
[2026-01-14 03:34:50] VERSION="7 (Core)"
[2026-01-14 03:34:50] ID="centos"
[2026-01-14 03:34:50] ID_LIKE="rhel fedora"
[2026-01-14 03:34:50] VERSION_ID="7"
[2026-01-14 03:34:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 03:34:50] ANSI_COLOR="0;31"
[2026-01-14 03:34:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 03:34:50] HOME_URL="https://www.centos.org/"
[2026-01-14 03:34:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 03:34:50] 
[2026-01-14 03:34:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 03:34:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 03:34:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 03:34:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 03:34:50] 
[2026-01-14 03:34:50] 2026-01-14 02:34:16,428 | INFO     | ***************************************
[2026-01-14 03:34:50] 2026-01-14 02:34:16,931 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 03:34:50] 2026-01-14 02:34:16,942 | INFO     | sufficient remaining disk space (491392073728 B)
[2026-01-14 03:34:50] 2026-01-14 02:34:16,943 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 03:34:50] 2026-01-14 02:34:16,943 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 03:34:50] 2026-01-14 02:34:16,943 | INFO     | update_server=False
[2026-01-14 03:34:50] 2026-01-14 02:34:16,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 03:34:50] 2026-01-14 02:34:16,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 03:34:50] 2026-01-14 02:34:17,037 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 03:34:50] 2026-01-14 02:34:17,038 | INFO     | aborting loop
[2026-01-14 03:34:50] 2026-01-14 02:34:17,209 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 03:34:50] 2026-01-14 02:34:17,356 | INFO     | all job control threads have been joined
[2026-01-14 03:34:50] 2026-01-14 02:34:17,479 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 03:34:50] 2026-01-14 02:34:17,490 | INFO     | all data control threads have been joined
[2026-01-14 03:34:50] 2026-01-14 02:34:17,687 | INFO     | all payload control threads have been joined
[2026-01-14 03:34:50] 2026-01-14 02:34:17,949 | INFO     | [job] retrieve thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:17,949 | INFO     | [job] queue monitor thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:18,024 | INFO     | [payload] failed_post thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:18,043 | INFO     | [job] job monitor thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:18,114 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:18,362 | INFO     | [job] control thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:18,490 | INFO     | [job] validate thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:18,496 | INFO     | [data] control thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:18,591 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:18,592 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:18,693 | INFO     | [payload] control thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:19,056 | INFO     | [payload] validate_post thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:19,215 | INFO     | [data] copytool_out thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:19,289 | INFO     | [data] copytool_in thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:21,487 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:27,523 | INFO     | job.realtimelogging is not enabled
[2026-01-14 03:34:50] 2026-01-14 02:34:28,529 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 03:34:50] 2026-01-14 02:34:43,603 | INFO     | [monitor] cgroup control has ended
[2026-01-14 03:34:50] 2026-01-14 02:34:45,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139963180664640)>', '<ExcThread(monitor, started 139962229970688)>']
[2026-01-14 03:34:50] 2026-01-14 02:34:47,908 | INFO     | PID=4145667 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 03:34:50] 2026-01-14 02:34:47,909 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 03:34:50] 2026-01-14 02:34:47,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 03:34:50] 2026-01-14 02:34:47,909 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 03:34:50] 2026-01-14 02:34:47,909 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 03:34:50] 2026-01-14 02:34:47,909 | INFO     | [monitor] control thread has ended
[2026-01-14 03:34:50] 2026-01-14 02:34:50,139 | INFO     | all workflow threads have been joined
[2026-01-14 03:34:50] 2026-01-14 02:34:50,139 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 03:34:50] 2026-01-14 02:34:50,139 | INFO     | traces error code: 0
[2026-01-14 03:34:50] 2026-01-14 02:34:50,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 03:34:50] 2026-01-14 02:34:50,181 [wrapper] ==== pilot stdout END ====
[2026-01-14 03:34:50] 2026-01-14 02:34:50,184 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 03:34:50] 2026-01-14 02:34:50,186 [wrapper] pilotpid: 4145667
[2026-01-14 03:34:50] 2026-01-14 02:34:50,188 [wrapper] Pilot exit status: 0
[2026-01-14 03:34:50] 2026-01-14 02:34:50,193 [wrapper] pandaids: 6969268665
[2026-01-14 03:34:50] 2026-01-14 02:34:50,206 [wrapper] cleanup supervisor_pilot 4163583 4145668
[2026-01-14 03:34:50] 2026-01-14 02:34:50,208 [wrapper] Test setup, not cleaning
[2026-01-14 03:34:50] 2026-01-14 02:34:50,210 [wrapper] apfmon messages muted
[2026-01-14 03:34:50] 2026-01-14 02:34:50,212 [wrapper] ==== wrapper stdout END ====
[2026-01-14 03:34:50] 2026-01-14 02:34:50,214 [wrapper] ==== wrapper stderr END ====
[2026-01-14 03:34:50]  *** Error codes and diagnostics ***
[2026-01-14 03:34:50]     "exeErrorCode": 0,
[2026-01-14 03:34:50]     "exeErrorDiag": "",
[2026-01-14 03:34:50]     "pilotErrorCode": 0,
[2026-01-14 03:34:50]     "pilotErrorDiag": "",
[2026-01-14 03:34:50]  *** Listing of results directory ***
[2026-01-14 03:34:50] total 732468
[2026-01-14 03:34:50] -rwx------ 1 boinc boinc     36322 Jan 13 22:59 runpilot2-wrapper.sh
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:12 pilot3.tar.gz
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:20 queuedata.json
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc       100 Jan 14 02:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 03:34:50] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 02:13 run_atlas
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc       105 Jan 14 02:13 job.xml
[2026-01-14 03:34:50] -rw-r--r-- 2 boinc boinc 591782329 Jan 14 02:13 EVNT.32794306._000239.pool.root.1
[2026-01-14 03:34:50] -rw-r--r-- 2 boinc boinc    592391 Jan 14 02:13 input.tar.gz
[2026-01-14 03:34:50] -rw-r--r-- 2 boinc boinc     15847 Jan 14 02:13 start_atlas.sh
[2026-01-14 03:34:50] drwxrwx--x 2 boinc boinc      4096 Jan 14 02:13 shared
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc         0 Jan 14 02:13 boinc_setup_complete
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc      6206 Jan 14 02:13 init_data.xml
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc         0 Jan 14 02:13 boinc_lockfile
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc      2505 Jan 14 02:13 pandaJob.out
[2026-01-14 03:34:50] -rw------- 1 boinc boinc    997226 Jan 14 02:13 agis_schedconf.cvmfs.json
[2026-01-14 03:34:50] -rw------- 1 boinc boinc   1516246 Jan 14 02:13 agis_ddmendpoints.agis.ALL.json
[2026-01-14 03:34:50] drwx------ 5 boinc boinc      4096 Jan 14 02:13 pilot3
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc       529 Jan 14 03:33 boinc_task_state.xml
[2026-01-14 03:34:50] -rw------- 1 boinc boinc 152436975 Jan 14 03:33 HITS.48215263._005973.pool.root.1
[2026-01-14 03:34:50] -rw------- 1 boinc boinc        95 Jan 14 03:33 pilot_heartbeat.json
[2026-01-14 03:34:50] -rw------- 1 boinc boinc      1010 Jan 14 03:34 memory_monitor_summary.json
[2026-01-14 03:34:50] -rw------- 1 boinc boinc    246140 Jan 14 03:34 log.48215263._005973.job.log.tgz.1
[2026-01-14 03:34:50] -rw------- 1 boinc boinc      7739 Jan 14 03:34 heartbeat.json
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc      8192 Jan 14 03:34 boinc_mmap_file
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc        26 Jan 14 03:34 wrapper_checkpoint.txt
[2026-01-14 03:34:50] -rw------- 1 boinc boinc      4824 Jan 14 03:34 pilotlog.txt
[2026-01-14 03:34:50] -rw------- 1 boinc boinc    712181 Jan 14 03:34 log.48215263._005973.job.log.1
[2026-01-14 03:34:50] -rw------- 1 boinc boinc       357 Jan 14 03:34 output.list
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc       620 Jan 14 03:34 runtime_log
[2026-01-14 03:34:50] -rw------- 1 boinc boinc    972800 Jan 14 03:34 result.tar.gz
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc      8897 Jan 14 03:34 runtime_log.err
[2026-01-14 03:34:50] -rw------- 1 boinc boinc       656 Jan 14 03:34 KbHLDm9a1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdyoKDmZTHbpm.diag
[2026-01-14 03:34:50] -rw-r--r-- 1 boinc boinc     11295 Jan 14 03:34 stderr.txt
[2026-01-14 03:34:50] HITS file was successfully produced:
[2026-01-14 03:34:50] -rw------- 1 boinc boinc 152436975 Jan 14 03:33 shared/HITS.pool.root.1
[2026-01-14 03:34:50]  *** Contents of shared directory: ***
[2026-01-14 03:34:50] total 728340
[2026-01-14 03:34:50] -rw-r--r-- 2 boinc boinc 591782329 Jan 14 02:13 ATLAS.root_0
[2026-01-14 03:34:50] -rw-r--r-- 2 boinc boinc    592391 Jan 14 02:13 input.tar.gz
[2026-01-14 03:34:50] -rw-r--r-- 2 boinc boinc     15847 Jan 14 02:13 start_atlas.sh
[2026-01-14 03:34:50] -rw------- 1 boinc boinc 152436975 Jan 14 03:33 HITS.pool.root.1
[2026-01-14 03:34:50] -rw------- 1 boinc boinc    972800 Jan 14 03:34 result.tar.gz
03:34:51 (4141412): run_atlas exited; CPU time 9291.970053
03:34:51 (4141412): called boinc_finish(0)

</stderr_txt>
]]>

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