Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:09:30 (3775535): wrapper (7.7.26015): starting
04:09:30 (3775535): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 04:09:30] Arguments: --nthreads 3
[2026-01-14 04:09:30] Threads: 3
[2026-01-14 04:09:30] Checking for CVMFS
[2026-01-14 04:09:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 04:09:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 04:09:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 04:09:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 04:09:31] 2.9.2.0 3663145 282 60940 155115 2 56 33132261 36864001 0 130560 0 301292 99.992 11006 23517 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 04:09:31] CVMFS is ok
[2026-01-14 04:09:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 04:09:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 04:09:31] Further information can be found at the LHC@home message board.
[2026-01-14 04:09:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 04:09:31] Checking for apptainer binary...
[2026-01-14 04:09:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 04:09:31] Running /usr/bin/apptainer --version
[2026-01-14 04:09:31] apptainer version 1.4.1-1.1
[2026-01-14 04:09:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 04:09:31] legendA257
[2026-01-14 04:09:31] apptainer works
[2026-01-14 04:09:31] Set ATHENA_PROC_NUMBER=3
[2026-01-14 04:09:31] Set ATHENA_CORE_NUMBER=3
[2026-01-14 04:09:31] Starting ATLAS job with PandaID=6969263104
[2026-01-14 04:09:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 05:06:46]  *** The last 200 lines of the pilot log: ***
[2026-01-14 05:06:47]  mtime=0
[2026-01-14 05:06:47]  protocol_id=None
[2026-01-14 05:06:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-14 05:06:47]  replicas=None
[2026-01-14 05:06:47]  scope=mc23_13p6TeV
[2026-01-14 05:06:47]  status=None
[2026-01-14 05:06:47]  status_code=0
[2026-01-14 05:06:47]  storage_token=
[2026-01-14 05:06:47]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6969263104/log.48215263._003688.job.log.tgz.1
[2026-01-14 05:06:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/86/log.48215263._003688.job.log.tgz.1
[2026-01-14 05:06:47]  workdir=None
[2026-01-14 05:06:47] ]
[2026-01-14 05:06:47] 2026-01-14 04:05:36,727 | INFO     | transferring file log.48215263._003688.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6969263104/log.48215263._003688.job.log.tgz.1 to /local/data/boinc/
[2026-01-14 05:06:47] 2026-01-14 04:05:36,727 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6969263104/log.48215263._003688.job.log.tgz.1 /local/data/boinc/slots/0/log.48215263._0036
[2026-01-14 05:06:47] 2026-01-14 04:05:36,739 | INFO     | adding to output.list: log.48215263._003688.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/86/log.48215263._003688.job.log.tg
[2026-01-14 05:06:47] 2026-01-14 04:05:36,739 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 05:06:47] 2026-01-14 04:05:36,739 | INFO     | summary of transferred files:
[2026-01-14 05:06:47] 2026-01-14 04:05:36,739 | INFO     |  -- lfn=log.48215263._003688.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 05:06:47] 2026-01-14 04:05:36,740 | INFO     | stage-out finished correctly
[2026-01-14 05:06:47] 2026-01-14 04:05:36,850 | INFO     | PID=3779251 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 05:06:47] 2026-01-14 04:05:37,850 | INFO     | time since job start (3361s) is within the limit (349056.0s)
[2026-01-14 05:06:47] 2026-01-14 04:05:38,051 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 05:06:47] 2026-01-14 04:05:39,432 | INFO     | job 6969263104 has state=finished
[2026-01-14 05:06:47] 2026-01-14 04:05:39,432 | INFO     | preparing for final server update for job 6969263104 in state='finished'
[2026-01-14 05:06:47] 2026-01-14 04:05:39,432 | INFO     | this job has now completed (state=finished)
[2026-01-14 05:06:47] 2026-01-14 04:05:39,432 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 05:06:47] 2026-01-14 04:05:39,433 | INFO     | log transfer has been attempted: DONE
[2026-01-14 05:06:47] 2026-01-14 04:05:39,433 | INFO     | job 6969263104 has finished - writing final server update
[2026-01-14 05:06:47] 2026-01-14 04:05:39,433 | INFO     | total number of processed events: 400 (read)
[2026-01-14 05:06:47] 2026-01-14 04:05:39,433 | INFO     | executing command: lscpu
[2026-01-14 05:06:47] 2026-01-14 04:05:39,449 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 05:06:47] 2026-01-14 04:05:39,855 | INFO     | time since job start (3363s) is within the limit (349056.0s)
[2026-01-14 05:06:47] 2026-01-14 04:05:39,986 | WARNING  | process 3785700 can no longer be monitored (due to stat problems) - aborting
[2026-01-14 05:06:47] 2026-01-14 04:05:39,986 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6969263104/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 05:06:47] 2026-01-14 04:05:40,023 | INFO     | number of running child processes to parent process 3785700: 1
[2026-01-14 05:06:47] 2026-01-14 04:05:40,024 | INFO     | maximum number of monitored processes: 6
[2026-01-14 05:06:47] 2026-01-14 04:05:41,861 | INFO     | time since job start (3365s) is within the limit (349056.0s)
[2026-01-14 05:06:47] 2026-01-14 04:05:42,526 | INFO     | monitor loop #260: job 0:6969263104 is in state 'finished'
[2026-01-14 05:06:47] 2026-01-14 04:05:42,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 05:06:47] 2026-01-14 04:05:43,603 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 05:06:47] 2026-01-14 04:05:43,604 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3584.125583333334
[2026-01-14 05:06:47] 2026-01-14 04:05:43,605 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6969263104/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 05:06:47] 2026-01-14 04:05:43,605 | INFO     | extracted standard info from prmon json
[2026-01-14 05:06:47] 2026-01-14 04:05:43,605 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 05:06:47] 2026-01-14 04:05:43,606 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 05:06:47] 2026-01-14 04:05:43,606 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 05:06:47] 2026-01-14 04:05:43,606 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 05:06:47] 2026-01-14 04:05:43,606 | INFO     | fitting pss+swap vs Time
[2026-01-14 05:06:47] 2026-01-14 04:05:43,606 | INFO     | sum of square deviations: 34277852.0
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | sum of deviations: 288938639.0
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | mean x: 1768361934.5
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | mean y: 2379222.25
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | intersect: -14903691631.134779
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | chi2: 0.012876276905622616
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | current memory leak: 8.43 B/s (using 48 data points, chi2=0.01)
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | could have reported an average CPU frequency of 3726 MHz (5 samples)
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | ..............................
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | . Timing measurements:
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | . get job = 0 s
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | . initial setup = 1 s
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | . payload setup = 2 s
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | . stage-in = 0 s
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | . payload execution = 3339 s
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | . stage-out = 0 s
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | . log creation = 0 s
[2026-01-14 05:06:47] 2026-01-14 04:05:43,607 | INFO     | ..............................
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | 
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | job summary report
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | --------------------------------------------------
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | PanDA job id: 6969263104
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | task id: 48215263
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | errors: (none)
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | pilot state: finished 
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | transexitcode: 0
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | exeerrorcode: 0
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | exeerrordiag: 
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | exitcode: 0
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | exitmsg: OK
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | cpuconsumptiontime: 9467 s
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | nevents: 400
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | neventsw: 0
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | pid: 3785700
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | pgrp: 3785700
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | corecount: 3
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | event service: False
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | sizes: {0: 2283116, 1: 2283975, 3: 2284237, 11: 2284265, 3345: 2309967, 3346: 2318971, 3348: 2319155, 3353: 2319381}
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | --------------------------------------------------
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | 
[2026-01-14 05:06:47] 2026-01-14 04:05:43,637 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-14 05:06:47] 2026-01-14 04:05:43,649 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,649 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,649 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,649 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | job 6969263104 has completed (purged errors)
[2026-01-14 05:06:47] 2026-01-14 04:05:43,650 | INFO     | overall cleanup function is called
[2026-01-14 05:06:47] 2026-01-14 04:05:44,656 | INFO     | --- collectZombieJob: --- 10, [3785700]
[2026-01-14 05:06:47] 2026-01-14 04:05:44,657 | INFO     | zombie collector waiting for pid 3785700
[2026-01-14 05:06:47] 2026-01-14 04:05:44,657 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 05:06:47] 2026-01-14 04:05:44,657 | INFO     | collected zombie processes
[2026-01-14 05:06:47] 2026-01-14 04:05:44,657 | INFO     | will attempt to kill all subprocesses of pid=3785700
[2026-01-14 05:06:47] 2026-01-14 04:05:44,698 | INFO     | process IDs to be killed: [3785700] (in reverse order)
[2026-01-14 05:06:47] 2026-01-14 04:05:44,721 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 05:06:47] 2026-01-14 04:05:44,722 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 05:06:47] 2026-01-14 04:05:44,723 | INFO     | did not find any defunct processes belonging to 3785700
[2026-01-14 05:06:47] 2026-01-14 04:05:44,724 | INFO     | did not find any defunct processes belonging to 3785700
[2026-01-14 05:06:47] 2026-01-14 04:05:44,724 | INFO     | ready for new job
[2026-01-14 05:06:47] 2026-01-14 04:05:44,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 05:06:47] 2026-01-14 04:05:44,725 | INFO     | ***************************************
[2026-01-14 05:06:47] 2026-01-14 04:05:44,725 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 05:06:47] 2026-01-14 04:05:44,725 | INFO     | ***************************************
[2026-01-14 05:06:47] 2026-01-14 04:05:44,725 | INFO     | 
[2026-01-14 05:06:47] 2026-01-14 04:05:44,725 | INFO     | architecture information:
[2026-01-14 05:06:47] 2026-01-14 04:05:44,725 | INFO     | executing command: cat /etc/os-release
[2026-01-14 05:06:47] 2026-01-14 04:05:44,733 | INFO     | cat /etc/os-release:
[2026-01-14 05:06:47] NAME="CentOS Linux"
[2026-01-14 05:06:47] VERSION="7 (Core)"
[2026-01-14 05:06:47] ID="centos"
[2026-01-14 05:06:47] ID_LIKE="rhel fedora"
[2026-01-14 05:06:47] VERSION_ID="7"
[2026-01-14 05:06:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 05:06:47] ANSI_COLOR="0;31"
[2026-01-14 05:06:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 05:06:47] HOME_URL="https://www.centos.org/"
[2026-01-14 05:06:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 05:06:47] 
[2026-01-14 05:06:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 05:06:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 05:06:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 05:06:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 05:06:47] 
[2026-01-14 05:06:47] 2026-01-14 04:05:44,734 | INFO     | ***************************************
[2026-01-14 05:06:47] 2026-01-14 04:05:45,237 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 05:06:47] 2026-01-14 04:05:45,250 | INFO     | sufficient remaining disk space (326436388864 B)
[2026-01-14 05:06:47] 2026-01-14 04:05:45,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 05:06:47] 2026-01-14 04:05:45,250 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 05:06:47] 2026-01-14 04:05:45,250 | INFO     | update_server=False
[2026-01-14 05:06:47] 2026-01-14 04:05:45,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 05:06:47] 2026-01-14 04:05:45,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 05:06:47] 2026-01-14 04:05:45,250 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 05:06:47] 2026-01-14 04:05:45,483 | INFO     | all job control threads have been joined
[2026-01-14 05:06:47] 2026-01-14 04:05:45,777 | INFO     | all data control threads have been joined
[2026-01-14 05:06:47] 2026-01-14 04:05:46,035 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 05:06:47] 2026-01-14 04:05:46,035 | INFO     | aborting loop
[2026-01-14 05:06:47] 2026-01-14 04:05:46,256 | INFO     | [job] queue monitor thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:46,256 | INFO     | [job] retrieve thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:46,262 | INFO     | all payload control threads have been joined
[2026-01-14 05:06:47] 2026-01-14 04:05:46,489 | INFO     | [job] control thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:46,783 | INFO     | [data] control thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:46,800 | INFO     | [job] validate thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:46,858 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:46,914 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:46,968 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:47,041 | INFO     | [job] job monitor thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:47,095 | INFO     | [payload] failed_post thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:47,175 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:47,257 | INFO     | [data] copytool_out thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:47,268 | INFO     | [payload] control thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:47,699 | INFO     | [payload] validate_post thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:47,723 | INFO     | [data] copytool_in thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:05:48,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 05:06:47] 2026-01-14 04:05:52,596 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 05:06:47] 2026-01-14 04:06:14,974 | INFO     | PID=3779251 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 05:06:47] 2026-01-14 04:06:14,975 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 05:06:47] 2026-01-14 04:06:14,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 05:06:47] 2026-01-14 04:06:14,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 05:06:47] 2026-01-14 04:06:40,557 | INFO     | [monitor] cgroup control has ended
[2026-01-14 05:06:47] 2026-01-14 04:06:41,845 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140571400972096)>', '<ExcThread(monitor, started 140570789934848)>']
[2026-01-14 05:06:47] 2026-01-14 04:06:42,111 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 05:06:47] 2026-01-14 04:06:42,111 | INFO     | [monitor] control thread has ended
[2026-01-14 05:06:47] 2026-01-14 04:06:46,871 | INFO     | all workflow threads have been joined
[2026-01-14 05:06:47] 2026-01-14 04:06:46,872 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 05:06:47] 2026-01-14 04:06:46,873 | INFO     | traces error code: 0
[2026-01-14 05:06:47] 2026-01-14 04:06:46,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 05:06:47] 2026-01-14 04:06:46,924 [wrapper] ==== pilot stdout END ====
[2026-01-14 05:06:47] 2026-01-14 04:06:46,926 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 05:06:47] 2026-01-14 04:06:46,928 [wrapper] pilotpid: 3779251
[2026-01-14 05:06:47] 2026-01-14 04:06:46,930 [wrapper] Pilot exit status: 0
[2026-01-14 05:06:47] 2026-01-14 04:06:46,938 [wrapper] pandaids: 6969263104
[2026-01-14 05:06:47] 2026-01-14 04:06:46,954 [wrapper] cleanup supervisor_pilot 3795001 3779252
[2026-01-14 05:06:47] 2026-01-14 04:06:46,956 [wrapper] Test setup, not cleaning
[2026-01-14 05:06:47] 2026-01-14 04:06:46,959 [wrapper] apfmon messages muted
[2026-01-14 05:06:47] 2026-01-14 04:06:46,961 [wrapper] ==== wrapper stdout END ====
[2026-01-14 05:06:47] 2026-01-14 04:06:46,963 [wrapper] ==== wrapper stderr END ====
[2026-01-14 05:06:47]  *** Error codes and diagnostics ***
[2026-01-14 05:06:47]     "exeErrorCode": 0,
[2026-01-14 05:06:47]     "exeErrorDiag": "",
[2026-01-14 05:06:47]     "pilotErrorCode": 0,
[2026-01-14 05:06:47]     "pilotErrorDiag": "",
[2026-01-14 05:06:47]  *** Listing of results directory ***
[2026-01-14 05:06:47] total 739972
[2026-01-14 05:06:47] -rwx------ 1 boinc boinc     36322 Jan 13 22:59 runpilot2-wrapper.sh
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:12 pilot3.tar.gz
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:16 queuedata.json
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc       100 Jan 14 04:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 05:06:47] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 04:09 run_atlas
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc       105 Jan 14 04:09 job.xml
[2026-01-14 05:06:47] -rw-r--r-- 2 boinc boinc 596235684 Jan 14 04:09 EVNT.32794306._000148.pool.root.1
[2026-01-14 05:06:47] -rw-r--r-- 2 boinc boinc    592391 Jan 14 04:09 input.tar.gz
[2026-01-14 05:06:47] -rw-r--r-- 2 boinc boinc     15847 Jan 14 04:09 start_atlas.sh
[2026-01-14 05:06:47] drwxrwx--x 2 boinc boinc      4096 Jan 14 04:09 shared
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc         0 Jan 14 04:09 boinc_setup_complete
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc      6442 Jan 14 04:09 init_data.xml
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc         0 Jan 14 04:09 boinc_lockfile
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc      2504 Jan 14 04:09 pandaJob.out
[2026-01-14 05:06:47] -rw------- 1 boinc boinc    997226 Jan 14 04:09 agis_schedconf.cvmfs.json
[2026-01-14 05:06:47] -rw------- 1 boinc boinc   1516246 Jan 14 04:09 agis_ddmendpoints.agis.ALL.json
[2026-01-14 05:06:47] drwx------ 5 boinc boinc      4096 Jan 14 04:09 pilot3
[2026-01-14 05:06:47] -rw------- 1 boinc boinc 156092532 Jan 14 05:05 HITS.48215263._003688.pool.root.1
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc       529 Jan 14 05:05 boinc_task_state.xml
[2026-01-14 05:06:47] -rw------- 1 boinc boinc      1021 Jan 14 05:05 memory_monitor_summary.json
[2026-01-14 05:06:47] -rw------- 1 boinc boinc    231958 Jan 14 05:05 log.48215263._003688.job.log.tgz.1
[2026-01-14 05:06:47] -rw------- 1 boinc boinc      7756 Jan 14 05:05 heartbeat.json
[2026-01-14 05:06:47] -rw------- 1 boinc boinc        95 Jan 14 05:06 pilot_heartbeat.json
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc      8192 Jan 14 05:06 boinc_mmap_file
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc        26 Jan 14 05:06 wrapper_checkpoint.txt
[2026-01-14 05:06:47] -rw------- 1 boinc boinc      4752 Jan 14 05:06 pilotlog.txt
[2026-01-14 05:06:47] -rw------- 1 boinc boinc    510392 Jan 14 05:06 log.48215263._003688.job.log.1
[2026-01-14 05:06:47] -rw------- 1 boinc boinc       357 Jan 14 05:06 output.list
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc       620 Jan 14 05:06 runtime_log
[2026-01-14 05:06:47] -rw------- 1 boinc boinc    757760 Jan 14 05:06 result.tar.gz
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc      8917 Jan 14 05:06 runtime_log.err
[2026-01-14 05:06:47] -rw------- 1 boinc boinc       660 Jan 14 05:06 ZjGODm1a1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxxoKDmxdB6lm.diag
[2026-01-14 05:06:47] -rw-r--r-- 1 boinc boinc     21884 Jan 14 05:06 stderr.txt
[2026-01-14 05:06:47] HITS file was successfully produced:
[2026-01-14 05:06:47] -rw------- 1 boinc boinc 156092532 Jan 14 05:05 shared/HITS.pool.root.1
[2026-01-14 05:06:47]  *** Contents of shared directory: ***
[2026-01-14 05:06:47] total 736044
[2026-01-14 05:06:47] -rw-r--r-- 2 boinc boinc 596235684 Jan 14 04:09 ATLAS.root_0
[2026-01-14 05:06:47] -rw-r--r-- 2 boinc boinc    592391 Jan 14 04:09 input.tar.gz
[2026-01-14 05:06:47] -rw-r--r-- 2 boinc boinc     15847 Jan 14 04:09 start_atlas.sh
[2026-01-14 05:06:47] -rw------- 1 boinc boinc 156092532 Jan 14 05:05 HITS.pool.root.1
[2026-01-14 05:06:47] -rw------- 1 boinc boinc    757760 Jan 14 05:06 result.tar.gz
05:06:48 (3775535): run_atlas exited; CPU time 9479.071268
05:06:48 (3775535): called boinc_finish(0)

</stderr_txt>
]]>

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