Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:49:49 (2026): wrapper (7.7.26015): starting
19:49:49 (2026): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 19:49:49] Arguments: --nthreads 8
[2026-01-13 19:49:49] Threads: 8
[2026-01-13 19:49:49] Checking for CVMFS
[2026-01-13 19:49:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 19:49:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 19:49:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 19:49:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 19:49:49] 2.11.2.0 2856 214580 81280 155112 0 57 11899892 20275200 1 130560 0 70216721 99.912 10506647 34188 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 19:49:49] CVMFS is ok
[2026-01-13 19:49:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 19:49:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 19:49:49] Further information can be found at the LHC@home message board.
[2026-01-13 19:49:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 19:49:49] Checking for apptainer binary...
[2026-01-13 19:49:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 19:49:49] Running /usr/bin/apptainer --version
[2026-01-13 19:49:49] apptainer version 1.3.2-1.el7
[2026-01-13 19:49:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 19:49:51] c-115-6.aglt2.org
[2026-01-13 19:49:51] apptainer works
[2026-01-13 19:49:51] Set ATHENA_PROC_NUMBER=8
[2026-01-13 19:49:51] Set ATHENA_CORE_NUMBER=8
[2026-01-13 19:49:51] Starting ATLAS job with PandaID=6969266852
[2026-01-13 19:49:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 21:04:21]  *** The last 200 lines of the pilot log: ***
[2026-01-13 21:04:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-13 21:04:21]  replicas=None
[2026-01-13 21:04:21]  scope=mc23_13p6TeV
[2026-01-13 21:04:21]  status=None
[2026-01-13 21:04:21]  status_code=0
[2026-01-13 21:04:21]  storage_token=
[2026-01-13 21:04:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969266852/log.48215263._005286.job.log.tgz.1
[2026-01-13 21:04:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/a0/log.48215263._005286.job.log.tgz.1
[2026-01-13 21:04:21]  workdir=None
[2026-01-13 21:04:21] ]
[2026-01-13 21:04:21] 2026-01-14 02:03:21,553 | INFO     | transferring file log.48215263._005286.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969266852/log.48215263._005286.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-13 21:04:21] 2026-01-14 02:03:21,553 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969266852/log.48215263._005286.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._005286.job
[2026-01-13 21:04:21] 2026-01-14 02:03:21,579 | INFO     | adding to output.list: log.48215263._005286.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/a0/log.48215263._005286.job.log.tg
[2026-01-13 21:04:21] 2026-01-14 02:03:21,580 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 21:04:21] 2026-01-14 02:03:21,581 | INFO     | summary of transferred files:
[2026-01-13 21:04:21] 2026-01-14 02:03:21,581 | INFO     |  -- lfn=log.48215263._005286.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 21:04:21] 2026-01-14 02:03:21,581 | INFO     | stage-out finished correctly
[2026-01-13 21:04:21] 2026-01-14 02:03:21,587 | INFO     | time since job start (4393s) is within the limit (349056.0s)
[2026-01-13 21:04:21] 2026-01-14 02:03:22,984 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 21:04:21] 2026-01-14 02:03:23,062 | INFO     | job 6969266852 has state=finished
[2026-01-13 21:04:21] 2026-01-14 02:03:23,063 | INFO     | preparing for final server update for job 6969266852 in state='finished'
[2026-01-13 21:04:21] 2026-01-14 02:03:23,064 | INFO     | this job has now completed (state=finished)
[2026-01-13 21:04:21] 2026-01-14 02:03:23,064 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 21:04:21] 2026-01-14 02:03:23,064 | INFO     | log transfer has been attempted: DONE
[2026-01-13 21:04:21] 2026-01-14 02:03:23,064 | INFO     | job 6969266852 has finished - writing final server update
[2026-01-13 21:04:21] 2026-01-14 02:03:23,065 | INFO     | total number of processed events: 400 (read)
[2026-01-13 21:04:21] 2026-01-14 02:03:23,066 | INFO     | executing command: lscpu
[2026-01-13 21:04:21] 2026-01-14 02:03:23,093 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 21:04:21] 2026-01-14 02:03:23,598 | INFO     | time since job start (4395s) is within the limit (349056.0s)
[2026-01-13 21:04:21] 2026-01-14 02:03:25,604 | INFO     | time since job start (4397s) is within the limit (349056.0s)
[2026-01-13 21:04:21] 2026-01-14 02:03:26,853 | WARNING  | process 13488 can no longer be monitored (due to stat problems) - aborting
[2026-01-13 21:04:21] 2026-01-14 02:03:26,853 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969266852/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 21:04:21] 2026-01-14 02:03:26,949 | INFO     | number of running child processes to parent process 13488: 1
[2026-01-13 21:04:21] 2026-01-14 02:03:26,949 | INFO     | maximum number of monitored processes: 6
[2026-01-13 21:04:21] 2026-01-14 02:03:27,606 | INFO     | time since job start (4399s) is within the limit (349056.0s)
[2026-01-13 21:04:21] 2026-01-14 02:03:29,452 | INFO     | monitor loop #327: job 0:6969266852 is in state 'finished'
[2026-01-13 21:04:21] 2026-01-14 02:03:29,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 21:04:21] 2026-01-14 02:03:29,611 | INFO     | time since job start (4401s) is within the limit (349056.0s)
[2026-01-13 21:04:21] 2026-01-14 02:03:30,135 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-13 21:04:21] 2026-01-14 02:03:30,138 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1845.625
[2026-01-13 21:04:21] 2026-01-14 02:03:30,150 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969266852/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 21:04:21] 2026-01-14 02:03:30,151 | INFO     | extracted standard info from prmon json
[2026-01-13 21:04:21] 2026-01-14 02:03:30,151 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 21:04:21] 2026-01-14 02:03:30,151 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 21:04:21] 2026-01-14 02:03:30,152 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 21:04:21] 2026-01-14 02:03:30,152 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 21:04:21] 2026-01-14 02:03:30,154 | INFO     | fitting pss+swap vs Time
[2026-01-13 21:04:21] 2026-01-14 02:03:30,154 | INFO     | sum of square deviations: 85136480.0
[2026-01-13 21:04:21] 2026-01-14 02:03:30,155 | INFO     | sum of deviations: -6612543960.000001
[2026-01-13 21:04:21] 2026-01-14 02:03:30,155 | INFO     | mean x: 1768354096.0
[2026-01-13 21:04:21] 2026-01-14 02:03:30,155 | INFO     | mean y: 2634977.6461538463
[2026-01-13 21:04:21] 2026-01-14 02:03:30,155 | INFO     | intersect: 137350563816.68275
[2026-01-13 21:04:21] 2026-01-14 02:03:30,156 | INFO     | chi2: 0.0756498435093406
[2026-01-13 21:04:21] 2026-01-14 02:03:30,156 | INFO     | current memory leak: -77.67 B/s (using 65 data points, chi2=0.08)
[2026-01-13 21:04:21] 2026-01-14 02:03:30,156 | INFO     | could have reported an average CPU frequency of 2036 MHz (6 samples)
[2026-01-13 21:04:21] 2026-01-14 02:03:30,157 | INFO     | ..............................
[2026-01-13 21:04:21] 2026-01-14 02:03:30,157 | INFO     | . Timing measurements:
[2026-01-13 21:04:21] 2026-01-14 02:03:30,157 | INFO     | . get job = 0 s
[2026-01-13 21:04:21] 2026-01-14 02:03:30,157 | INFO     | . initial setup = 2 s
[2026-01-13 21:04:21] 2026-01-14 02:03:30,157 | INFO     | . payload setup = 8 s
[2026-01-13 21:04:21] 2026-01-14 02:03:30,157 | INFO     | . stage-in = 0 s
[2026-01-13 21:04:21] 2026-01-14 02:03:30,158 | INFO     | . payload execution = 4363 s
[2026-01-13 21:04:21] 2026-01-14 02:03:30,158 | INFO     | . stage-out = 0 s
[2026-01-13 21:04:21] 2026-01-14 02:03:30,158 | INFO     | . log creation = 0 s
[2026-01-13 21:04:21] 2026-01-14 02:03:30,158 | INFO     | ..............................
[2026-01-13 21:04:21] 2026-01-14 02:03:30,729 | INFO     | 
[2026-01-13 21:04:21] 2026-01-14 02:03:30,730 | INFO     | job summary report
[2026-01-13 21:04:21] 2026-01-14 02:03:30,730 | INFO     | --------------------------------------------------
[2026-01-13 21:04:21] 2026-01-14 02:03:30,730 | INFO     | PanDA job id: 6969266852
[2026-01-13 21:04:21] 2026-01-14 02:03:30,730 | INFO     | task id: 48215263
[2026-01-13 21:04:21] 2026-01-14 02:03:30,730 | INFO     | errors: (none)
[2026-01-13 21:04:21] 2026-01-14 02:03:30,730 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 21:04:21] 2026-01-14 02:03:30,731 | INFO     | pilot state: finished 
[2026-01-13 21:04:21] 2026-01-14 02:03:30,731 | INFO     | transexitcode: 0
[2026-01-13 21:04:21] 2026-01-14 02:03:30,731 | INFO     | exeerrorcode: 0
[2026-01-13 21:04:21] 2026-01-14 02:03:30,731 | INFO     | exeerrordiag: 
[2026-01-13 21:04:21] 2026-01-14 02:03:30,731 | INFO     | exitcode: 0
[2026-01-13 21:04:21] 2026-01-14 02:03:30,731 | INFO     | exitmsg: OK
[2026-01-13 21:04:21] 2026-01-14 02:03:30,732 | INFO     | cpuconsumptiontime: 31136 s
[2026-01-13 21:04:21] 2026-01-14 02:03:30,732 | INFO     | nevents: 400
[2026-01-13 21:04:21] 2026-01-14 02:03:30,732 | INFO     | neventsw: 0
[2026-01-13 21:04:21] 2026-01-14 02:03:30,732 | INFO     | pid: 13488
[2026-01-13 21:04:21] 2026-01-14 02:03:30,732 | INFO     | pgrp: 13488
[2026-01-13 21:04:21] 2026-01-14 02:03:30,732 | INFO     | corecount: 8
[2026-01-13 21:04:21] 2026-01-14 02:03:30,733 | INFO     | event service: False
[2026-01-13 21:04:21] 2026-01-14 02:03:30,733 | INFO     | sizes: {0: 2283945, 6: 2284207, 11: 2284235, 4375: 2310306, 4377: 2319304, 4378: 2319360, 4385: 2319682}
[2026-01-13 21:04:21] 2026-01-14 02:03:30,733 | INFO     | --------------------------------------------------
[2026-01-13 21:04:21] 2026-01-14 02:03:30,733 | INFO     | 
[2026-01-13 21:04:21] 2026-01-14 02:03:30,733 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-13 21:04:21] 2026-01-14 02:03:30,761 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,762 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,762 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,762 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,762 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,762 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,763 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,763 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,764 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,764 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,765 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 21:04:21] 2026-01-14 02:03:30,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,765 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 21:04:21] 2026-01-14 02:03:30,765 | INFO     | job 6969266852 has completed (purged errors)
[2026-01-13 21:04:21] 2026-01-14 02:03:30,766 | INFO     | overall cleanup function is called
[2026-01-13 21:04:21] 2026-01-14 02:03:31,773 | INFO     | --- collectZombieJob: --- 10, [13488]
[2026-01-13 21:04:21] 2026-01-14 02:03:31,774 | INFO     | zombie collector waiting for pid 13488
[2026-01-13 21:04:21] 2026-01-14 02:03:31,774 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 21:04:21] 2026-01-14 02:03:31,774 | INFO     | collected zombie processes
[2026-01-13 21:04:21] 2026-01-14 02:03:31,774 | INFO     | will attempt to kill all subprocesses of pid=13488
[2026-01-13 21:04:21] 2026-01-14 02:03:31,858 | INFO     | process IDs to be killed: [13488] (in reverse order)
[2026-01-13 21:04:21] 2026-01-14 02:03:31,914 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 21:04:21] 2026-01-14 02:03:31,914 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 21:04:21] 2026-01-14 02:03:31,918 | INFO     | did not find any defunct processes belonging to 13488
[2026-01-13 21:04:21] 2026-01-14 02:03:31,922 | INFO     | did not find any defunct processes belonging to 13488
[2026-01-13 21:04:21] 2026-01-14 02:03:31,922 | INFO     | ready for new job
[2026-01-13 21:04:21] 2026-01-14 02:03:31,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 21:04:21] 2026-01-14 02:03:31,923 | INFO     | ***************************************
[2026-01-13 21:04:21] 2026-01-14 02:03:31,923 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 21:04:21] 2026-01-14 02:03:31,924 | INFO     | ***************************************
[2026-01-13 21:04:21] 2026-01-14 02:03:31,924 | INFO     | 
[2026-01-13 21:04:21] 2026-01-14 02:03:31,924 | INFO     | architecture information:
[2026-01-13 21:04:21] 2026-01-14 02:03:31,925 | INFO     | executing command: cat /etc/os-release
[2026-01-13 21:04:21] 2026-01-14 02:03:31,942 | INFO     | cat /etc/os-release:
[2026-01-13 21:04:21] NAME="CentOS Linux"
[2026-01-13 21:04:21] VERSION="7 (Core)"
[2026-01-13 21:04:21] ID="centos"
[2026-01-13 21:04:21] ID_LIKE="rhel fedora"
[2026-01-13 21:04:21] VERSION_ID="7"
[2026-01-13 21:04:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 21:04:21] ANSI_COLOR="0;31"
[2026-01-13 21:04:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 21:04:21] HOME_URL="https://www.centos.org/"
[2026-01-13 21:04:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 21:04:21] 
[2026-01-13 21:04:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 21:04:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 21:04:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 21:04:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 21:04:21] 
[2026-01-13 21:04:21] 2026-01-14 02:03:31,942 | INFO     | ***************************************
[2026-01-13 21:04:21] 2026-01-14 02:03:32,446 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-13 21:04:21] 2026-01-14 02:03:32,465 | INFO     | sufficient remaining disk space (17870880768 B)
[2026-01-13 21:04:21] 2026-01-14 02:03:32,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 21:04:21] 2026-01-14 02:03:32,466 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 21:04:21] 2026-01-14 02:03:32,466 | INFO     | update_server=False
[2026-01-13 21:04:21] 2026-01-14 02:03:32,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 21:04:21] 2026-01-14 02:03:32,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 21:04:21] 2026-01-14 02:03:32,961 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 21:04:21] 2026-01-14 02:03:32,961 | INFO     | aborting loop
[2026-01-13 21:04:21] 2026-01-14 02:03:33,106 | INFO     | all payload control threads have been joined
[2026-01-13 21:04:21] 2026-01-14 02:03:33,157 | INFO     | all data control threads have been joined
[2026-01-13 21:04:21] 2026-01-14 02:03:33,409 | INFO     | all job control threads have been joined
[2026-01-13 21:04:21] 2026-01-14 02:03:33,472 | INFO     | [job] retrieve thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:33,478 | INFO     | [data] copytool_in thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:33,571 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 21:04:21] 2026-01-14 02:03:33,592 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:33,821 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:33,962 | INFO     | [job] job monitor thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:34,073 | INFO     | [payload] validate_post thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:34,112 | INFO     | [payload] control thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:34,164 | INFO     | [data] control thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:34,390 | INFO     | [payload] failed_post thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:34,415 | INFO     | [job] control thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:34,472 | INFO     | [data] copytool_out thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:34,690 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:34,946 | INFO     | [job] validate thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:35,253 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 21:04:21] 2026-01-14 02:03:36,255 | INFO     | [job] queue monitor thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:37,577 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:03:42,740 | INFO     | job.realtimelogging is not enabled
[2026-01-13 21:04:21] 2026-01-14 02:03:43,745 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 21:04:21] 2026-01-14 02:04:02,834 | INFO     | PID=6249 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-13 21:04:21] 2026-01-14 02:04:02,834 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 21:04:21] 2026-01-14 02:04:02,834 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 21:04:21] 2026-01-14 02:04:02,835 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 21:04:21] 2026-01-14 02:04:14,650 | INFO     | [monitor] cgroup control has ended
[2026-01-13 21:04:21] 2026-01-14 02:04:15,657 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140210085054272)>', '<ExcThread(monitor, started 140209626781440)>']
[2026-01-13 21:04:21] 2026-01-14 02:04:15,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 21:04:21] 2026-01-14 02:04:15,892 | INFO     | [monitor] control thread has ended
[2026-01-13 21:04:21] 2026-01-14 02:04:20,684 | INFO     | all workflow threads have been joined
[2026-01-13 21:04:21] 2026-01-14 02:04:20,684 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 21:04:21] 2026-01-14 02:04:20,685 | INFO     | traces error code: 0
[2026-01-13 21:04:21] 2026-01-14 02:04:20,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 21:04:21] 2026-01-14 02:04:20,794 [wrapper] ==== pilot stdout END ====
[2026-01-13 21:04:21] 2026-01-14 02:04:20,799 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 21:04:21] 2026-01-14 02:04:20,804 [wrapper] pilotpid: 6249
[2026-01-13 21:04:21] 2026-01-14 02:04:20,808 [wrapper] Pilot exit status: 0
[2026-01-13 21:04:21] 2026-01-14 02:04:20,827 [wrapper] pandaids: 6969266852
[2026-01-13 21:04:21] 2026-01-14 02:04:20,877 [wrapper] cleanup supervisor_pilot 10738 6250
[2026-01-13 21:04:21] 2026-01-14 02:04:20,881 [wrapper] Test setup, not cleaning
[2026-01-13 21:04:21] 2026-01-14 02:04:20,886 [wrapper] apfmon messages muted
[2026-01-13 21:04:21] 2026-01-14 02:04:20,890 [wrapper] ==== wrapper stdout END ====
[2026-01-13 21:04:21] 2026-01-14 02:04:20,895 [wrapper] ==== wrapper stderr END ====
[2026-01-13 21:04:21]  *** Error codes and diagnostics ***
[2026-01-13 21:04:21]     "exeErrorCode": 0,
[2026-01-13 21:04:21]     "exeErrorDiag": "",
[2026-01-13 21:04:21]     "pilotErrorCode": 0,
[2026-01-13 21:04:21]     "pilotErrorDiag": "",
[2026-01-13 21:04:21]  *** Listing of results directory ***
[2026-01-13 21:04:21] total 730476
[2026-01-13 21:04:21] -rwx------ 1 boincer umatlas     36322 Jan 13 16:58 runpilot2-wrapper.sh
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas      5112 Jan 13 17:12 queuedata.json
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas    579449 Jan 13 17:12 pilot3.tar.gz
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas       100 Jan 13 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 21:04:21] -rwxr-xr-x 1 boincer umatlas      7986 Jan 13 19:49 run_atlas
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas       105 Jan 13 19:49 job.xml
[2026-01-13 21:04:21] -rw-r--r-- 2 boincer umatlas 594245740 Jan 13 19:49 EVNT.32794306._000212.pool.root.1
[2026-01-13 21:04:21] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 19:49 start_atlas.sh
[2026-01-13 21:04:21] drwxrwx--x 2 boincer umatlas      4096 Jan 13 19:49 shared
[2026-01-13 21:04:21] -rw-r--r-- 2 boincer umatlas    592393 Jan 13 19:49 input.tar.gz
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas         0 Jan 13 19:49 boinc_lockfile
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas      2505 Jan 13 19:49 pandaJob.out
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas        57 Jan 13 19:49 setup.sh.local
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas    997218 Jan 13 19:50 agis_schedconf.cvmfs.json
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas   1516246 Jan 13 19:50 agis_ddmendpoints.agis.ALL.json
[2026-01-13 21:04:21] drwx------ 5 boincer umatlas      4096 Jan 13 19:50 pilot3
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas      5908 Jan 13 21:01 init_data.xml
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas 147909841 Jan 13 21:02 HITS.48215263._005286.pool.root.1
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas        95 Jan 13 21:03 pilot_heartbeat.json
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas       530 Jan 13 21:03 boinc_task_state.xml
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas      1042 Jan 13 21:03 memory_monitor_summary.json
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas    320482 Jan 13 21:03 log.48215263._005286.job.log.tgz.1
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas      7837 Jan 13 21:03 heartbeat.json
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas      8192 Jan 13 21:03 boinc_mmap_file
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas        27 Jan 13 21:03 wrapper_checkpoint.txt
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas      4817 Jan 13 21:04 pilotlog.txt
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas    639338 Jan 13 21:04 log.48215263._005286.job.log.1
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas       357 Jan 13 21:04 output.list
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas       620 Jan 13 21:04 runtime_log
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas    983040 Jan 13 21:04 result.tar.gz
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas      9337 Jan 13 21:04 runtime_log.err
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas       657 Jan 13 21:04 RIRKDmma1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKsoKDmA27gQo.diag
[2026-01-13 21:04:21] -rw-r--r-- 1 boincer umatlas     21887 Jan 13 21:04 stderr.txt
[2026-01-13 21:04:21] HITS file was successfully produced:
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas 147909841 Jan 13 21:02 shared/HITS.pool.root.1
[2026-01-13 21:04:21]  *** Contents of shared directory: ***
[2026-01-13 21:04:21] total 726328
[2026-01-13 21:04:21] -rw-r--r-- 2 boincer umatlas 594245740 Jan 13 19:49 ATLAS.root_0
[2026-01-13 21:04:21] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 19:49 start_atlas.sh
[2026-01-13 21:04:21] -rw-r--r-- 2 boincer umatlas    592393 Jan 13 19:49 input.tar.gz
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas 147909841 Jan 13 21:02 HITS.pool.root.1
[2026-01-13 21:04:21] -rw------- 1 boincer umatlas    983040 Jan 13 21:04 result.tar.gz
21:04:22 (2026): run_atlas exited; CPU time 31111.600616
21:04:22 (2026): called boinc_finish(0)

</stderr_txt>
]]>

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