Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:43:56 (3783166): wrapper (7.7.26015): starting
02:43:56 (3783166): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 02:43:56] Arguments: --nthreads 3
[2026-01-14 02:43:56] Threads: 3
[2026-01-14 02:43:56] Checking for CVMFS
[2026-01-14 02:43:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 02:43:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 02:43:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 02:43:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 02:43:57] 2.9.2.0 3760741 55 50120 155113 0 57 23283986 36864000 0 130560 0 60241 99.970 4221 27953 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 02:43:57] CVMFS is ok
[2026-01-14 02:43:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 02:43:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 02:43:57] Further information can be found at the LHC@home message board.
[2026-01-14 02:43:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 02:43:57] Checking for apptainer binary...
[2026-01-14 02:43:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 02:43:57] Running /usr/bin/apptainer --version
[2026-01-14 02:43:57] apptainer version 1.4.1-1.1
[2026-01-14 02:43:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 02:43:57] thA349
[2026-01-14 02:43:57] apptainer works
[2026-01-14 02:43:57] Set ATHENA_PROC_NUMBER=3
[2026-01-14 02:43:57] Set ATHENA_CORE_NUMBER=3
[2026-01-14 02:43:57] Starting ATLAS job with PandaID=6969263241
[2026-01-14 02:43:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 03:39:22]  *** The last 200 lines of the pilot log: ***
[2026-01-14 03:39:22] 2026-01-14 02:38:50,535 | INFO     | collected zombie processes
[2026-01-14 03:39:22] 2026-01-14 02:38:50,535 | INFO     | will attempt to kill all subprocesses of pid=3793334
[2026-01-14 03:39:22] 2026-01-14 02:38:50,577 | INFO     | process IDs to be killed: [3793334] (in reverse order)
[2026-01-14 03:39:22] 2026-01-14 02:38:50,600 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 03:39:22] 2026-01-14 02:38:50,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 03:39:22] 2026-01-14 02:38:50,602 | INFO     | did not find any defunct processes belonging to 3793334
[2026-01-14 03:39:22] 2026-01-14 02:38:50,603 | INFO     | did not find any defunct processes belonging to 3793334
[2026-01-14 03:39:22] 2026-01-14 02:38:50,603 | INFO     | ready for new job
[2026-01-14 03:39:22] 2026-01-14 02:38:50,603 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 03:39:22] 2026-01-14 02:38:50,604 | INFO     | ***************************************
[2026-01-14 03:39:22] 2026-01-14 02:38:50,604 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 03:39:22] 2026-01-14 02:38:50,604 | INFO     | ***************************************
[2026-01-14 03:39:22] 2026-01-14 02:38:50,604 | INFO     | 
[2026-01-14 03:39:22] 2026-01-14 02:38:50,604 | INFO     | architecture information:
[2026-01-14 03:39:22] 2026-01-14 02:38:50,604 | INFO     | executing command: cat /etc/os-release
[2026-01-14 03:39:22] 2026-01-14 02:38:50,612 | INFO     | cat /etc/os-release:
[2026-01-14 03:39:22] NAME="CentOS Linux"
[2026-01-14 03:39:22] VERSION="7 (Core)"
[2026-01-14 03:39:22] ID="centos"
[2026-01-14 03:39:22] ID_LIKE="rhel fedora"
[2026-01-14 03:39:22] VERSION_ID="7"
[2026-01-14 03:39:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 03:39:22] ANSI_COLOR="0;31"
[2026-01-14 03:39:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 03:39:22] HOME_URL="https://www.centos.org/"
[2026-01-14 03:39:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 03:39:22] 
[2026-01-14 03:39:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 03:39:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 03:39:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 03:39:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 03:39:22] 
[2026-01-14 03:39:22] 2026-01-14 02:38:50,612 | INFO     | ***************************************
[2026-01-14 03:39:22] 2026-01-14 02:38:51,116 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 03:39:22] 2026-01-14 02:38:51,128 | INFO     | sufficient remaining disk space (281072893952 B)
[2026-01-14 03:39:22] 2026-01-14 02:38:51,128 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 03:39:22] 2026-01-14 02:38:51,128 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 03:39:22] 2026-01-14 02:38:51,128 | INFO     | update_server=False
[2026-01-14 03:39:22] 2026-01-14 02:38:51,128 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 03:39:22] 2026-01-14 02:38:51,128 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 03:39:22] 2026-01-14 02:38:51,142 | INFO     | all data control threads have been joined
[2026-01-14 03:39:22] 2026-01-14 02:38:51,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 03:39:22] 2026-01-14 02:38:51,271 | INFO     | all job control threads have been joined
[2026-01-14 03:39:22] 2026-01-14 02:38:52,025 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 03:39:22] 2026-01-14 02:38:52,025 | INFO     | aborting loop
[2026-01-14 03:39:22] 2026-01-14 02:38:52,134 | INFO     | [job] retrieve thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:52,134 | INFO     | [job] queue monitor thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:52,147 | INFO     | [data] control thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:52,162 | INFO     | all payload control threads have been joined
[2026-01-14 03:39:22] 2026-01-14 02:38:52,277 | INFO     | [job] control thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:52,544 | INFO     | [data] copytool_in thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:52,832 | INFO     | [payload] failed_post thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:52,913 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:53,030 | INFO     | [job] job monitor thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:53,048 | INFO     | [job] validate thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:53,068 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:53,153 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:53,167 | INFO     | [payload] control thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:53,208 | INFO     | [data] copytool_out thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:53,541 | INFO     | [payload] validate_post thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:38:53,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 03:39:22] 2026-01-14 02:38:57,733 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:39:01,615 | INFO     | job.realtimelogging is not enabled
[2026-01-14 03:39:22] 2026-01-14 02:39:02,621 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 03:39:22] 2026-01-14 02:39:07,296 | INFO     | [monitor] cgroup control has ended
[2026-01-14 03:39:22] 2026-01-14 02:39:07,734 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455082796864)>', '<ExcThread(monitor, started 140454079227648)>']
[2026-01-14 03:39:22] 2026-01-14 02:39:12,744 | INFO     | all workflow threads have been joined
[2026-01-14 03:39:22] 2026-01-14 02:39:12,744 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 03:39:22] 2026-01-14 02:39:12,745 | INFO     | traces error code: 0
[2026-01-14 03:39:22] 2026-01-14 02:39:12,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 03:39:22] 2026-01-14 02:39:22,176 | INFO     | PID=3786893 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 03:39:22] 2026-01-14 02:39:22,177 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 03:39:22] 2026-01-14 02:39:22,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 03:39:22] 2026-01-14 02:39:22,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 03:39:22] 2026-01-14 02:39:22,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 03:39:22] 2026-01-14 02:39:22,177 | INFO     | [monitor] control thread has ended
[2026-01-14 03:39:22] 2026-01-14 02:39:22,222 [wrapper] ==== pilot stdout END ====
[2026-01-14 03:39:22] 2026-01-14 02:39:22,225 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 03:39:22] 2026-01-14 02:39:22,227 [wrapper] pilotpid: 3786893
[2026-01-14 03:39:22] 2026-01-14 02:39:22,229 [wrapper] Pilot exit status: 0
[2026-01-14 03:39:22] 2026-01-14 02:39:22,236 [wrapper] pandaids: 6969263241
[2026-01-14 03:39:22] 2026-01-14 02:39:22,252 [wrapper] cleanup supervisor_pilot 3802541 3786894
[2026-01-14 03:39:22] 2026-01-14 02:39:22,254 [wrapper] Test setup, not cleaning
[2026-01-14 03:39:22] 2026-01-14 02:39:22,256 [wrapper] apfmon messages muted
[2026-01-14 03:39:22] 2026-01-14 02:39:22,259 [wrapper] ==== wrapper stdout END ====
[2026-01-14 03:39:22] 2026-01-14 02:39:22,261 [wrapper] ==== wrapper stderr END ====
[2026-01-14 03:39:22]  *** Error codes and diagnostics ***
[2026-01-14 03:39:22]     "exeErrorCode": 0,
[2026-01-14 03:39:22]     "exeErrorDiag": "",
[2026-01-14 03:39:22]     "pilotErrorCode": 0,
[2026-01-14 03:39:22]     "pilotErrorDiag": "",
[2026-01-14 03:39:22]  *** Listing of results directory ***
[2026-01-14 03:39:22] total 737864
[2026-01-14 03:39:22] -rwx------ 1 boinc boinc     36322 Jan 13 22:59 runpilot2-wrapper.sh
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:05 pilot3.tar.gz
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:12 queuedata.json
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc       100 Jan 14 02:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 03:39:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 02:43 run_atlas
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc       105 Jan 14 02:43 job.xml
[2026-01-14 03:39:22] -rw-r--r-- 2 boinc boinc 597443760 Jan 14 02:43 EVNT.32794306._000150.pool.root.1
[2026-01-14 03:39:22] -rw-r--r-- 2 boinc boinc    592393 Jan 14 02:43 input.tar.gz
[2026-01-14 03:39:22] -rw-r--r-- 2 boinc boinc     15847 Jan 14 02:43 start_atlas.sh
[2026-01-14 03:39:22] drwxrwx--x 2 boinc boinc      4096 Jan 14 02:43 shared
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc         0 Jan 14 02:43 boinc_setup_complete
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc      6445 Jan 14 02:43 init_data.xml
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc         0 Jan 14 02:43 boinc_lockfile
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc      2504 Jan 14 02:43 pandaJob.out
[2026-01-14 03:39:22] -rw------- 1 boinc boinc    997226 Jan 14 02:44 agis_schedconf.cvmfs.json
[2026-01-14 03:39:22] -rw------- 1 boinc boinc   1516246 Jan 14 02:44 agis_ddmendpoints.agis.ALL.json
[2026-01-14 03:39:22] drwx------ 5 boinc boinc      4096 Jan 14 02:44 pilot3
[2026-01-14 03:39:22] -rw------- 1 boinc boinc 152759206 Jan 14 03:38 HITS.48215263._003741.pool.root.1
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc       529 Jan 14 03:38 boinc_task_state.xml
[2026-01-14 03:39:22] -rw------- 1 boinc boinc      1016 Jan 14 03:38 memory_monitor_summary.json
[2026-01-14 03:39:22] -rw------- 1 boinc boinc    232955 Jan 14 03:38 log.48215263._003741.job.log.tgz.1
[2026-01-14 03:39:22] -rw------- 1 boinc boinc      7744 Jan 14 03:38 heartbeat.json
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc      8192 Jan 14 03:39 boinc_mmap_file
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc        26 Jan 14 03:39 wrapper_checkpoint.txt
[2026-01-14 03:39:22] -rw------- 1 boinc boinc       747 Jan 14 03:39 pilotlog.txt
[2026-01-14 03:39:22] -rw------- 1 boinc boinc        95 Jan 14 03:39 pilot_heartbeat.json
[2026-01-14 03:39:22] -rw------- 1 boinc boinc    499785 Jan 14 03:39 log.48215263._003741.job.log.1
[2026-01-14 03:39:22] -rw------- 1 boinc boinc       357 Jan 14 03:39 output.list
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc       620 Jan 14 03:39 runtime_log
[2026-01-14 03:39:22] -rw------- 1 boinc boinc    747520 Jan 14 03:39 result.tar.gz
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc      8897 Jan 14 03:39 runtime_log.err
[2026-01-14 03:39:22] -rw------- 1 boinc boinc       656 Jan 14 03:39 MZUNDm8a1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdliKDmSznuAo.diag
[2026-01-14 03:39:22] -rw-r--r-- 1 boinc boinc     10371 Jan 14 03:39 stderr.txt
[2026-01-14 03:39:22] HITS file was successfully produced:
[2026-01-14 03:39:22] -rw------- 1 boinc boinc 152759206 Jan 14 03:38 shared/HITS.pool.root.1
[2026-01-14 03:39:22]  *** Contents of shared directory: ***
[2026-01-14 03:39:22] total 733960
[2026-01-14 03:39:22] -rw-r--r-- 2 boinc boinc 597443760 Jan 14 02:43 ATLAS.root_0
[2026-01-14 03:39:22] -rw-r--r-- 2 boinc boinc    592393 Jan 14 02:43 input.tar.gz
[2026-01-14 03:39:22] -rw-r--r-- 2 boinc boinc     15847 Jan 14 02:43 start_atlas.sh
[2026-01-14 03:39:22] -rw------- 1 boinc boinc 152759206 Jan 14 03:38 HITS.pool.root.1
[2026-01-14 03:39:22] -rw------- 1 boinc boinc    747520 Jan 14 03:39 result.tar.gz
03:39:23 (3783166): run_atlas exited; CPU time 9245.646278
03:39:23 (3783166): called boinc_finish(0)

</stderr_txt>
]]>

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