Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:02:32 (4088884): wrapper (7.7.26015): starting
20:02:32 (4088884): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 20:02:32] Arguments: --nthreads 8
[2026-01-13 20:02:32] Threads: 8
[2026-01-13 20:02:32] Checking for CVMFS
[2026-01-13 20:02:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 20:02:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 20:02:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 20:02:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 20:02:32] 2.13.3.0 6454 28708 253452 155112 2 314 28891418 40960000 11970 16776704 0 34077389 99.842 31185613 34216 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 20:02:32] CVMFS is ok
[2026-01-13 20:02:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 20:02:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 20:02:32] Further information can be found at the LHC@home message board.
[2026-01-13 20:02:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 20:02:32] Checking for apptainer binary...
[2026-01-13 20:02:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 20:02:32] Running /usr/bin/apptainer --version
[2026-01-13 20:02:32] apptainer version 1.4.5-2.el9
[2026-01-13 20:02:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 20:02:33] c-206-40.aglt2.org
[2026-01-13 20:02:33] apptainer works
[2026-01-13 20:02:33] Set ATHENA_PROC_NUMBER=8
[2026-01-13 20:02:33] Set ATHENA_CORE_NUMBER=8
[2026-01-13 20:02:33] Starting ATLAS job with PandaID=6969263232
[2026-01-13 20:02:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 21:11:20]  *** The last 200 lines of the pilot log: ***
[2026-01-13 21:11:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-13 21:11:20]  replicas=None
[2026-01-13 21:11:20]  scope=mc23_13p6TeV
[2026-01-13 21:11:20]  status=None
[2026-01-13 21:11:20]  status_code=0
[2026-01-13 21:11:20]  storage_token=
[2026-01-13 21:11:20]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6969263232/log.48215263._003732.job.log.tgz.1
[2026-01-13 21:11:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/83/log.48215263._003732.job.log.tgz.1
[2026-01-13 21:11:20]  workdir=None
[2026-01-13 21:11:20] ]
[2026-01-13 21:11:20] 2026-01-14 02:10:42,406 | INFO     | transferring file log.48215263._003732.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6969263232/log.48215263._003732.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-13 21:11:20] 2026-01-14 02:10:42,406 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6969263232/log.48215263._003732.job.log.tgz.1 /tmp/boinchome/slots/3/log.48215263._003732.job
[2026-01-13 21:11:20] 2026-01-14 02:10:42,426 | INFO     | adding to output.list: log.48215263._003732.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/83/log.48215263._003732.job.log.tg
[2026-01-13 21:11:20] 2026-01-14 02:10:42,427 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 21:11:20] 2026-01-14 02:10:42,427 | INFO     | summary of transferred files:
[2026-01-13 21:11:20] 2026-01-14 02:10:42,427 | INFO     |  -- lfn=log.48215263._003732.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 21:11:20] 2026-01-14 02:10:42,427 | INFO     | stage-out finished correctly
[2026-01-13 21:11:20] 2026-01-14 02:10:43,427 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 21:11:20] 2026-01-14 02:10:43,524 | INFO     | job 6969263232 has state=finished
[2026-01-13 21:11:20] 2026-01-14 02:10:43,524 | INFO     | preparing for final server update for job 6969263232 in state='finished'
[2026-01-13 21:11:20] 2026-01-14 02:10:43,525 | INFO     | this job has now completed (state=finished)
[2026-01-13 21:11:20] 2026-01-14 02:10:43,525 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 21:11:20] 2026-01-14 02:10:43,525 | INFO     | log transfer has been attempted: DONE
[2026-01-13 21:11:20] 2026-01-14 02:10:43,525 | INFO     | job 6969263232 has finished - writing final server update
[2026-01-13 21:11:20] 2026-01-14 02:10:43,525 | INFO     | total number of processed events: 400 (read)
[2026-01-13 21:11:20] 2026-01-14 02:10:43,539 | INFO     | executing command: lscpu
[2026-01-13 21:11:20] 2026-01-14 02:10:43,727 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 21:11:20] 2026-01-14 02:10:43,740 | WARNING  | process 4101056 can no longer be monitored (due to stat problems) - aborting
[2026-01-13 21:11:20] 2026-01-14 02:10:43,741 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6969263232/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 21:11:20] 2026-01-14 02:10:43,946 | INFO     | time since job start (4075s) is within the limit (349056.0s)
[2026-01-13 21:11:20] 2026-01-14 02:10:44,093 | INFO     | number of running child processes to parent process 4101056: 1
[2026-01-13 21:11:20] 2026-01-14 02:10:44,094 | INFO     | maximum number of monitored processes: 6
[2026-01-13 21:11:20] 2026-01-14 02:10:45,319 | INFO     | PID=4093097 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-13 21:11:20] 2026-01-14 02:10:45,319 | INFO     | .. there are 11 such processes running
[2026-01-13 21:11:20] 2026-01-14 02:10:46,320 | INFO     | time since job start (4078s) is within the limit (349056.0s)
[2026-01-13 21:11:20] 2026-01-14 02:10:46,598 | INFO     | monitor loop #284: job 0:6969263232 is in state 'finished'
[2026-01-13 21:11:20] 2026-01-14 02:10:46,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 21:11:20] 2026-01-14 02:10:48,037 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 21:11:20] 2026-01-14 02:10:48,045 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3288.9944375000005
[2026-01-13 21:11:20] 2026-01-14 02:10:48,053 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6969263232/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 21:11:20] 2026-01-14 02:10:48,054 | INFO     | extracted standard info from prmon json
[2026-01-13 21:11:20] 2026-01-14 02:10:48,054 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 21:11:20] 2026-01-14 02:10:48,054 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 21:11:20] 2026-01-14 02:10:48,054 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 21:11:20] 2026-01-14 02:10:48,054 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 21:11:20] 2026-01-14 02:10:48,055 | INFO     | fitting pss+swap vs Time
[2026-01-13 21:11:20] 2026-01-14 02:10:48,056 | INFO     | sum of square deviations: 66975612.9833333
[2026-01-13 21:11:20] 2026-01-14 02:10:48,056 | INFO     | sum of deviations: -1803975549.583333
[2026-01-13 21:11:20] 2026-01-14 02:10:48,056 | INFO     | mean x: 1768354705.3166666
[2026-01-13 21:11:20] 2026-01-14 02:10:48,056 | INFO     | mean y: 2582716.0833333335
[2026-01-13 21:11:20] 2026-01-14 02:10:48,056 | INFO     | intersect: 47632884392.840614
[2026-01-13 21:11:20] 2026-01-14 02:10:48,056 | INFO     | chi2: 0.026481905980280093
[2026-01-13 21:11:20] 2026-01-14 02:10:48,056 | INFO     | current memory leak: -26.93 B/s (using 60 data points, chi2=0.03)
[2026-01-13 21:11:20] 2026-01-14 02:10:48,056 | INFO     | could have reported an average CPU frequency of 3290 MHz (6 samples)
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | ..............................
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | . Timing measurements:
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | . get job = 0 s
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | . initial setup = 2 s
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | . payload setup = 8 s
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | . stage-in = 0 s
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | . payload execution = 4044 s
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | . stage-out = 0 s
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | . log creation = 0 s
[2026-01-13 21:11:20] 2026-01-14 02:10:48,057 | INFO     | ..............................
[2026-01-13 21:11:20] 2026-01-14 02:10:48,125 | INFO     | 
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | job summary report
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | --------------------------------------------------
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | PanDA job id: 6969263232
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | task id: 48215263
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | errors: (none)
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | pilot state: finished 
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | transexitcode: 0
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | exeerrorcode: 0
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | exeerrordiag: 
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | exitcode: 0
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | exitmsg: OK
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | cpuconsumptiontime: 21746 s
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | nevents: 400
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | neventsw: 0
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | pid: 4101056
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | pgrp: 4101056
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | corecount: 8
[2026-01-13 21:11:20] 2026-01-14 02:10:48,126 | INFO     | event service: False
[2026-01-13 21:11:20] 2026-01-14 02:10:48,127 | INFO     | sizes: {0: 2283944, 1: 2283972, 6: 2284234, 11: 2284262, 4057: 2310155, 4058: 2319153, 4059: 2319337, 4064: 2319531}
[2026-01-13 21:11:20] 2026-01-14 02:10:48,127 | INFO     | --------------------------------------------------
[2026-01-13 21:11:20] 2026-01-14 02:10:48,127 | INFO     | 
[2026-01-13 21:11:20] 2026-01-14 02:10:48,127 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-13 21:11:20] 2026-01-14 02:10:48,170 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,172 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 21:11:20] 2026-01-14 02:10:48,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,172 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 21:11:20] 2026-01-14 02:10:48,172 | INFO     | job 6969263232 has completed (purged errors)
[2026-01-13 21:11:20] 2026-01-14 02:10:48,172 | INFO     | overall cleanup function is called
[2026-01-13 21:11:20] 2026-01-14 02:10:49,180 | INFO     | --- collectZombieJob: --- 10, [4101056]
[2026-01-13 21:11:20] 2026-01-14 02:10:49,181 | INFO     | zombie collector waiting for pid 4101056
[2026-01-13 21:11:20] 2026-01-14 02:10:49,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 21:11:20] 2026-01-14 02:10:49,181 | INFO     | collected zombie processes
[2026-01-13 21:11:20] 2026-01-14 02:10:49,181 | INFO     | will attempt to kill all subprocesses of pid=4101056
[2026-01-13 21:11:20] 2026-01-14 02:10:49,797 | INFO     | process IDs to be killed: [4101056] (in reverse order)
[2026-01-13 21:11:20] 2026-01-14 02:10:49,920 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 21:11:20] 2026-01-14 02:10:49,920 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 21:11:20] 2026-01-14 02:10:49,931 | INFO     | did not find any defunct processes belonging to 4101056
[2026-01-13 21:11:20] 2026-01-14 02:10:49,943 | INFO     | did not find any defunct processes belonging to 4101056
[2026-01-13 21:11:20] 2026-01-14 02:10:49,944 | INFO     | ready for new job
[2026-01-13 21:11:20] 2026-01-14 02:10:49,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 21:11:20] 2026-01-14 02:10:49,946 | INFO     | ***************************************
[2026-01-13 21:11:20] 2026-01-14 02:10:49,946 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 21:11:20] 2026-01-14 02:10:49,946 | INFO     | ***************************************
[2026-01-13 21:11:20] 2026-01-14 02:10:49,946 | INFO     | 
[2026-01-13 21:11:20] 2026-01-14 02:10:49,973 | INFO     | architecture information:
[2026-01-13 21:11:20] 2026-01-14 02:10:49,974 | INFO     | executing command: cat /etc/os-release
[2026-01-13 21:11:20] 2026-01-14 02:10:49,995 | INFO     | cat /etc/os-release:
[2026-01-13 21:11:20] NAME="CentOS Linux"
[2026-01-13 21:11:20] VERSION="7 (Core)"
[2026-01-13 21:11:20] ID="centos"
[2026-01-13 21:11:20] ID_LIKE="rhel fedora"
[2026-01-13 21:11:20] VERSION_ID="7"
[2026-01-13 21:11:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 21:11:20] ANSI_COLOR="0;31"
[2026-01-13 21:11:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 21:11:20] HOME_URL="https://www.centos.org/"
[2026-01-13 21:11:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 21:11:20] 
[2026-01-13 21:11:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 21:11:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 21:11:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 21:11:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 21:11:20] 
[2026-01-13 21:11:20] 2026-01-14 02:10:49,995 | INFO     | ***************************************
[2026-01-13 21:11:20] 2026-01-14 02:10:50,500 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-13 21:11:20] 2026-01-14 02:10:50,554 | INFO     | sufficient remaining disk space (83273711616 B)
[2026-01-13 21:11:20] 2026-01-14 02:10:50,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 21:11:20] 2026-01-14 02:10:50,554 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 21:11:20] 2026-01-14 02:10:50,554 | INFO     | update_server=False
[2026-01-13 21:11:20] 2026-01-14 02:10:50,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 21:11:20] 2026-01-14 02:10:50,555 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 21:11:20] 2026-01-14 02:10:50,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 21:11:20] 2026-01-14 02:10:50,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 21:11:20] 2026-01-14 02:10:50,557 | INFO     | aborting loop
[2026-01-13 21:11:20] 2026-01-14 02:10:50,728 | INFO     | all data control threads have been joined
[2026-01-13 21:11:20] 2026-01-14 02:10:50,944 | INFO     | all payload control threads have been joined
[2026-01-13 21:11:20] 2026-01-14 02:10:51,561 | INFO     | [job] retrieve thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:51,567 | INFO     | [job] job monitor thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:51,644 | INFO     | [payload] failed_post thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:51,701 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:51,727 | INFO     | [data] copytool_in thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:51,735 | INFO     | [data] control thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:51,951 | INFO     | [payload] control thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:52,158 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:52,195 | INFO     | all job control threads have been joined
[2026-01-13 21:11:20] 2026-01-14 02:10:52,323 | INFO     | [payload] validate_post thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:52,561 | INFO     | [data] copytool_out thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:52,611 | INFO     | [job] validate thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:52,796 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:53,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 21:11:20] 2026-01-14 02:10:53,200 | INFO     | [job] control thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:54,147 | INFO     | [job] queue monitor thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:54,563 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:10:54,918 | INFO     | [monitor] cgroup control has ended
[2026-01-13 21:11:20] 2026-01-14 02:11:01,319 | INFO     | job.realtimelogging is not enabled
[2026-01-13 21:11:20] 2026-01-14 02:11:02,325 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 21:11:20] 2026-01-14 02:11:03,459 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139820620859200)>', '<ExcThread(monitor, started 139820277937920)>']
[2026-01-13 21:11:20] 2026-01-14 02:11:08,485 | INFO     | all workflow threads have been joined
[2026-01-13 21:11:20] 2026-01-14 02:11:08,486 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 21:11:20] 2026-01-14 02:11:08,486 | INFO     | traces error code: 0
[2026-01-13 21:11:20] 2026-01-14 02:11:08,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 21:11:20] 2026-01-14 02:11:19,711 | INFO     | PID=4093097 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 21:11:20] 2026-01-14 02:11:19,712 | INFO     | .. there are 11 such processes running
[2026-01-13 21:11:20] 2026-01-14 02:11:19,712 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 21:11:20] 2026-01-14 02:11:19,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 21:11:20] 2026-01-14 02:11:19,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 21:11:20] 2026-01-14 02:11:19,713 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 21:11:20] 2026-01-14 02:11:19,713 | INFO     | [monitor] control thread has ended
[2026-01-13 21:11:20] 2026-01-14 02:11:19,840 [wrapper] ==== pilot stdout END ====
[2026-01-13 21:11:20] 2026-01-14 02:11:19,842 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 21:11:20] 2026-01-14 02:11:19,852 [wrapper] pilotpid: 4093097
[2026-01-13 21:11:20] 2026-01-14 02:11:19,855 [wrapper] Pilot exit status: 0
[2026-01-13 21:11:20] 2026-01-14 02:11:19,868 [wrapper] pandaids: 6969263232
[2026-01-13 21:11:20] 2026-01-14 02:11:19,940 [wrapper] cleanup supervisor_pilot   65349 4093098
[2026-01-13 21:11:20] 2026-01-14 02:11:19,944 [wrapper] Test setup, not cleaning
[2026-01-13 21:11:20] 2026-01-14 02:11:19,948 [wrapper] apfmon messages muted
[2026-01-13 21:11:20] 2026-01-14 02:11:19,951 [wrapper] ==== wrapper stdout END ====
[2026-01-13 21:11:20] 2026-01-14 02:11:19,953 [wrapper] ==== wrapper stderr END ====
[2026-01-13 21:11:20]  *** Error codes and diagnostics ***
[2026-01-13 21:11:20]     "exeErrorCode": 0,
[2026-01-13 21:11:20]     "exeErrorDiag": "",
[2026-01-13 21:11:20]     "pilotErrorCode": 0,
[2026-01-13 21:11:20]     "pilotErrorDiag": "",
[2026-01-13 21:11:20]  *** Listing of results directory ***
[2026-01-13 21:11:20] total 737744
[2026-01-13 21:11:20] -rwx------. 1 boincer umatlas     36322 Jan 13 16:59 runpilot2-wrapper.sh
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas    579449 Jan 13 17:05 pilot3.tar.gz
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 17:12 queuedata.json
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas       100 Jan 13 20:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 21:11:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 13 20:02 run_atlas
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas       105 Jan 13 20:02 job.xml
[2026-01-13 21:11:20] -rw-r--r--. 2 boincer umatlas 597443760 Jan 13 20:02 EVNT.32794306._000150.pool.root.1
[2026-01-13 21:11:20] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 20:02 start_atlas.sh
[2026-01-13 21:11:20] drwxrwx--x. 2 boincer umatlas      4096 Jan 13 20:02 shared
[2026-01-13 21:11:20] -rw-r--r--. 2 boincer umatlas    592392 Jan 13 20:02 input.tar.gz
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas         0 Jan 13 20:02 boinc_lockfile
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas      2504 Jan 13 20:02 pandaJob.out
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas        57 Jan 13 20:02 setup.sh.local
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas    997218 Jan 13 20:02 agis_schedconf.cvmfs.json
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas   1516246 Jan 13 20:02 agis_ddmendpoints.agis.ALL.json
[2026-01-13 21:11:20] drwx------. 5 boincer umatlas      4096 Jan 13 20:02 pilot3
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas      6907 Jan 13 21:03 init_data.xml
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas 152272916 Jan 13 21:10 HITS.48215263._003732.pool.root.1
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas       530 Jan 13 21:10 boinc_task_state.xml
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas      1033 Jan 13 21:10 memory_monitor_summary.json
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas    309317 Jan 13 21:10 log.48215263._003732.job.log.tgz.1
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas      7767 Jan 13 21:10 heartbeat.json
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas      8192 Jan 13 21:11 boinc_mmap_file
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas        27 Jan 13 21:11 wrapper_checkpoint.txt
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas        95 Jan 13 21:11 pilot_heartbeat.json
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas       823 Jan 13 21:11 pilotlog.txt
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas    597533 Jan 13 21:11 log.48215263._003732.job.log.1
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas       357 Jan 13 21:11 output.list
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas       620 Jan 13 21:11 runtime_log
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas    921600 Jan 13 21:11 result.tar.gz
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas       652 Jan 13 21:11 weaMDm8a1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMliKDmr9wIgm.diag
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas      9342 Jan 13 21:11 runtime_log.err
[2026-01-13 21:11:20] -rw-r--r--. 1 boincer umatlas     22028 Jan 13 21:11 stderr.txt
[2026-01-13 21:11:20] HITS file was successfully produced:
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas 152272916 Jan 13 21:10 shared/HITS.pool.root.1
[2026-01-13 21:11:20]  *** Contents of shared directory: ***
[2026-01-13 21:11:20] total 733656
[2026-01-13 21:11:20] -rw-r--r--. 2 boincer umatlas 597443760 Jan 13 20:02 ATLAS.root_0
[2026-01-13 21:11:20] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 20:02 start_atlas.sh
[2026-01-13 21:11:20] -rw-r--r--. 2 boincer umatlas    592392 Jan 13 20:02 input.tar.gz
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas 152272916 Jan 13 21:10 HITS.pool.root.1
[2026-01-13 21:11:20] -rw-------. 1 boincer umatlas    921600 Jan 13 21:11 result.tar.gz
21:11:21 (4088884): run_atlas exited; CPU time 21783.791001
21:11:21 (4088884): called boinc_finish(0)

</stderr_txt>
]]>

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