Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:05:57 (3256970): wrapper (7.7.26015): starting
03:05:57 (3256970): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 03:05:57] Arguments: --nthreads 3
[2026-01-14 03:05:57] Threads: 3
[2026-01-14 03:05:57] Checking for CVMFS
[2026-01-14 03:05:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 03:05:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 03:05:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 03:05:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 03:05:57] 2.9.2.0 3190851 168 56656 155113 3 57 21183155 36864000 0 130560 0 180750 99.987 9653 8807 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 03:05:57] CVMFS is ok
[2026-01-14 03:05:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 03:05:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 03:05:57] Further information can be found at the LHC@home message board.
[2026-01-14 03:05:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 03:05:57] Checking for apptainer binary...
[2026-01-14 03:05:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 03:05:57] Running /usr/bin/apptainer --version
[2026-01-14 03:05:57] apptainer version 1.4.1-1.1
[2026-01-14 03:05:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 03:05:57] madmaxA273
[2026-01-14 03:05:57] apptainer works
[2026-01-14 03:05:57] Set ATHENA_PROC_NUMBER=3
[2026-01-14 03:05:57] Set ATHENA_CORE_NUMBER=3
[2026-01-14 03:05:57] Starting ATLAS job with PandaID=6969261370
[2026-01-14 03:05:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 04:01:13]  *** The last 200 lines of the pilot log: ***
[2026-01-14 04:01:13] 2026-01-14 03:00:39,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 04:01:13] 2026-01-14 03:00:39,895 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 04:01:13] 2026-01-14 03:00:39,895 | INFO     | job 6969261370 has completed (purged errors)
[2026-01-14 04:01:13] 2026-01-14 03:00:39,895 | INFO     | overall cleanup function is called
[2026-01-14 04:01:13] 2026-01-14 03:00:40,901 | INFO     | --- collectZombieJob: --- 10, [3267142]
[2026-01-14 04:01:13] 2026-01-14 03:00:40,902 | INFO     | zombie collector waiting for pid 3267142
[2026-01-14 04:01:13] 2026-01-14 03:00:40,902 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 04:01:13] 2026-01-14 03:00:40,902 | INFO     | collected zombie processes
[2026-01-14 04:01:13] 2026-01-14 03:00:40,902 | INFO     | will attempt to kill all subprocesses of pid=3267142
[2026-01-14 04:01:13] 2026-01-14 03:00:40,945 | INFO     | process IDs to be killed: [3267142] (in reverse order)
[2026-01-14 04:01:13] 2026-01-14 03:00:40,968 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 04:01:13] 2026-01-14 03:00:40,969 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 04:01:13] 2026-01-14 03:00:40,970 | INFO     | did not find any defunct processes belonging to 3267142
[2026-01-14 04:01:13] 2026-01-14 03:00:40,971 | INFO     | did not find any defunct processes belonging to 3267142
[2026-01-14 04:01:13] 2026-01-14 03:00:40,971 | INFO     | ready for new job
[2026-01-14 04:01:13] 2026-01-14 03:00:40,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 04:01:13] 2026-01-14 03:00:40,972 | INFO     | ***************************************
[2026-01-14 04:01:13] 2026-01-14 03:00:40,972 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 04:01:13] 2026-01-14 03:00:40,972 | INFO     | ***************************************
[2026-01-14 04:01:13] 2026-01-14 03:00:40,972 | INFO     | 
[2026-01-14 04:01:13] 2026-01-14 03:00:40,972 | INFO     | architecture information:
[2026-01-14 04:01:13] 2026-01-14 03:00:40,972 | INFO     | executing command: cat /etc/os-release
[2026-01-14 04:01:13] 2026-01-14 03:00:40,980 | INFO     | cat /etc/os-release:
[2026-01-14 04:01:13] NAME="CentOS Linux"
[2026-01-14 04:01:13] VERSION="7 (Core)"
[2026-01-14 04:01:13] ID="centos"
[2026-01-14 04:01:13] ID_LIKE="rhel fedora"
[2026-01-14 04:01:13] VERSION_ID="7"
[2026-01-14 04:01:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 04:01:13] ANSI_COLOR="0;31"
[2026-01-14 04:01:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 04:01:13] HOME_URL="https://www.centos.org/"
[2026-01-14 04:01:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 04:01:13] 
[2026-01-14 04:01:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 04:01:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 04:01:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 04:01:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 04:01:13] 
[2026-01-14 04:01:13] 2026-01-14 03:00:40,980 | INFO     | ***************************************
[2026-01-14 04:01:13] 2026-01-14 03:00:41,483 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 04:01:13] 2026-01-14 03:00:41,495 | INFO     | sufficient remaining disk space (338683756544 B)
[2026-01-14 04:01:13] 2026-01-14 03:00:41,495 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 04:01:13] 2026-01-14 03:00:41,495 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 04:01:13] 2026-01-14 03:00:41,495 | INFO     | update_server=False
[2026-01-14 04:01:13] 2026-01-14 03:00:41,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 04:01:13] 2026-01-14 03:00:41,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 04:01:13] 2026-01-14 03:00:41,495 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:01:13] 2026-01-14 03:00:42,179 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:01:13] 2026-01-14 03:00:42,179 | INFO     | aborting loop
[2026-01-14 04:01:13] 2026-01-14 03:00:42,300 | INFO     | all data control threads have been joined
[2026-01-14 04:01:13] 2026-01-14 03:00:42,499 | INFO     | [job] queue monitor thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:42,500 | INFO     | [job] retrieve thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:42,611 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:42,650 | INFO     | all job control threads have been joined
[2026-01-14 04:01:13] 2026-01-14 03:00:42,693 | INFO     | [job] validate thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:42,705 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:42,960 | INFO     | all payload control threads have been joined
[2026-01-14 04:01:13] 2026-01-14 03:00:43,044 | INFO     | [payload] validate_post thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:43,183 | INFO     | [job] job monitor thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:43,306 | INFO     | [data] control thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:43,306 | INFO     | [payload] failed_post thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:43,501 | INFO     | [data] copytool_out thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:43,507 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:43,538 | INFO     | [data] copytool_in thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:43,656 | INFO     | [job] control thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:43,966 | INFO     | [payload] control thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:44,560 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 04:01:13] 2026-01-14 03:00:48,566 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:00:52,253 | INFO     | job.realtimelogging is not enabled
[2026-01-14 04:01:13] 2026-01-14 03:00:53,259 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 04:01:13] 2026-01-14 03:01:06,710 | INFO     | [monitor] cgroup control has ended
[2026-01-14 04:01:13] 2026-01-14 03:01:08,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140412831373120)>', '<ExcThread(monitor, started 140412186511104)>']
[2026-01-14 04:01:13] 2026-01-14 03:01:12,355 | INFO     | PID=3260696 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 04:01:13] 2026-01-14 03:01:12,356 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 04:01:13] 2026-01-14 03:01:12,356 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 04:01:13] 2026-01-14 03:01:12,356 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 04:01:13] 2026-01-14 03:01:12,356 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 04:01:13] 2026-01-14 03:01:12,356 | INFO     | [monitor] control thread has ended
[2026-01-14 04:01:13] 2026-01-14 03:01:13,846 | INFO     | all workflow threads have been joined
[2026-01-14 04:01:13] 2026-01-14 03:01:13,847 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 04:01:13] 2026-01-14 03:01:13,847 | INFO     | traces error code: 0
[2026-01-14 04:01:13] 2026-01-14 03:01:13,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 04:01:13] 2026-01-14 03:01:13,898 [wrapper] ==== pilot stdout END ====
[2026-01-14 04:01:13] 2026-01-14 03:01:13,900 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 04:01:13] 2026-01-14 03:01:13,902 [wrapper] pilotpid: 3260696
[2026-01-14 04:01:13] 2026-01-14 03:01:13,904 [wrapper] Pilot exit status: 0
[2026-01-14 04:01:13] 2026-01-14 03:01:13,911 [wrapper] pandaids: 6969261370
[2026-01-14 04:01:13] 2026-01-14 03:01:13,927 [wrapper] cleanup supervisor_pilot 3276285 3260697
[2026-01-14 04:01:13] 2026-01-14 03:01:13,929 [wrapper] Test setup, not cleaning
[2026-01-14 04:01:13] 2026-01-14 03:01:13,932 [wrapper] apfmon messages muted
[2026-01-14 04:01:13] 2026-01-14 03:01:13,934 [wrapper] ==== wrapper stdout END ====
[2026-01-14 04:01:13] 2026-01-14 03:01:13,936 [wrapper] ==== wrapper stderr END ====
[2026-01-14 04:01:13]  *** Error codes and diagnostics ***
[2026-01-14 04:01:13]     "exeErrorCode": 0,
[2026-01-14 04:01:13]     "exeErrorDiag": "",
[2026-01-14 04:01:13]     "pilotErrorCode": 0,
[2026-01-14 04:01:13]     "pilotErrorDiag": "",
[2026-01-14 04:01:13]  *** Listing of results directory ***
[2026-01-14 04:01:13] total 736792
[2026-01-14 04:01:13] -rwx------ 1 boinc boinc     36322 Jan 13 22:58 runpilot2-wrapper.sh
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc    579449 Jan 13 23:05 pilot3.tar.gz
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:07 queuedata.json
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc       100 Jan 14 03:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 04:01:13] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 03:05 run_atlas
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc       105 Jan 14 03:05 job.xml
[2026-01-14 04:01:13] -rw-r--r-- 2 boinc boinc 600268663 Jan 14 03:05 EVNT.32794306._000106.pool.root.1
[2026-01-14 04:01:13] drwxrwx--x 2 boinc boinc      4096 Jan 14 03:05 shared
[2026-01-14 04:01:13] -rw-r--r-- 2 boinc boinc    592388 Jan 14 03:05 input.tar.gz
[2026-01-14 04:01:13] -rw-r--r-- 2 boinc boinc     15847 Jan 14 03:05 start_atlas.sh
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc         0 Jan 14 03:05 boinc_setup_complete
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc      6443 Jan 14 03:05 init_data.xml
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc         0 Jan 14 03:05 boinc_lockfile
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc      2505 Jan 14 03:05 pandaJob.out
[2026-01-14 04:01:13] -rw------- 1 boinc boinc    997226 Jan 14 03:06 agis_schedconf.cvmfs.json
[2026-01-14 04:01:13] -rw------- 1 boinc boinc   1516246 Jan 14 03:06 agis_ddmendpoints.agis.ALL.json
[2026-01-14 04:01:13] drwx------ 5 boinc boinc      4096 Jan 14 03:06 pilot3
[2026-01-14 04:01:13] -rw------- 1 boinc boinc 148837789 Jan 14 04:00 HITS.48215263._002639.pool.root.1
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc       529 Jan 14 04:00 boinc_task_state.xml
[2026-01-14 04:01:13] -rw------- 1 boinc boinc        95 Jan 14 04:00 pilot_heartbeat.json
[2026-01-14 04:01:13] -rw------- 1 boinc boinc      1024 Jan 14 04:00 memory_monitor_summary.json
[2026-01-14 04:01:13] -rw------- 1 boinc boinc    231218 Jan 14 04:00 log.48215263._002639.job.log.tgz.1
[2026-01-14 04:01:13] -rw------- 1 boinc boinc      7764 Jan 14 04:00 heartbeat.json
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc      8192 Jan 14 04:00 boinc_mmap_file
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc        26 Jan 14 04:00 wrapper_checkpoint.txt
[2026-01-14 04:01:13] -rw------- 1 boinc boinc      4824 Jan 14 04:01 pilotlog.txt
[2026-01-14 04:01:13] -rw------- 1 boinc boinc    499391 Jan 14 04:01 log.48215263._002639.job.log.1
[2026-01-14 04:01:13] -rw------- 1 boinc boinc       357 Jan 14 04:01 output.list
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc       620 Jan 14 04:01 runtime_log
[2026-01-14 04:01:13] -rw------- 1 boinc boinc    747520 Jan 14 04:01 result.tar.gz
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc      8917 Jan 14 04:01 runtime_log.err
[2026-01-14 04:01:13] -rw------- 1 boinc boinc       661 Jan 14 04:01 oV8LDmga1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1fiKDmBSmL4m.diag
[2026-01-14 04:01:13] -rw-r--r-- 1 boinc boinc     11110 Jan 14 04:01 stderr.txt
[2026-01-14 04:01:13] HITS file was successfully produced:
[2026-01-14 04:01:13] -rw------- 1 boinc boinc 148837789 Jan 14 04:00 shared/HITS.pool.root.1
[2026-01-14 04:01:13]  *** Contents of shared directory: ***
[2026-01-14 04:01:13] total 732888
[2026-01-14 04:01:13] -rw-r--r-- 2 boinc boinc 600268663 Jan 14 03:05 ATLAS.root_0
[2026-01-14 04:01:13] -rw-r--r-- 2 boinc boinc    592388 Jan 14 03:05 input.tar.gz
[2026-01-14 04:01:13] -rw-r--r-- 2 boinc boinc     15847 Jan 14 03:05 start_atlas.sh
[2026-01-14 04:01:13] -rw------- 1 boinc boinc 148837789 Jan 14 04:00 HITS.pool.root.1
[2026-01-14 04:01:13] -rw------- 1 boinc boinc    747520 Jan 14 04:01 result.tar.gz
04:01:15 (3256970): run_atlas exited; CPU time 9113.110703
04:01:15 (3256970): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN